BAC Information

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BAC

Clone NameB6Ng01-098F18
Chromosome14 (Build37)
Map Location 11,400,713 - 11,566,112
singlet/doubletdoublet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098F18.bB6Ng01-098F18.g
ACCDH908476DH908477
length1,1361,138
definitionDH908476|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F18, 5' end.DH908477|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,564,963 - 11,566,112)(11,400,713 - 11,401,849)
sequence
gaattctatcgtttagagagcaaactcttatgacgaatttaagtgcaccc
tgactatctctgatcctcctcaccctccctcaccctctctggtcctcgct
gccacctactcacccaaacttgcctccttcccccacccttactgtctctt
tctccttgaccccacttctctcctcttttccatttttcccttgccccctc
cactcatctttcctcctttcttttatttgaaaaaaaaaaaaaactttaag
gtacaaacagatacaaaaatgaaaccagaagcatccagatttccatcatt
gggcagatttgctttcatagttttgctttttttttctctttcccctttct
tttcaaaatgcttattgatggacctagagtccctataatttcctgtcttt
tctttcactctctattcttcctgacatgttcacttcctgctccaaatcct
gtcaatctgggtgtgtcccaattcattctttgtatttccccatatacaca
cacacacacacagatatatatatatctgtgtgtgtgtatccccaggaata
tatgttggtgtgcttcaagttatttttgttgtttaataactatttatgat
gtgaaatgtgtactgatttgtatatataaaaccaactaattctttttaag
actgttgcatactatatatgaaacaaattttacttacccatttccttttg
ggagtgaatttttagatcattgcaaagttttgttatagtaaccagtgtta
tgatactcttcttagcatgtacctccttgtatgcatgtttatcaagctct
gcgcatctgccagggtgaatcactatgcatgggaatatgtaatactgcgt
ttgataaatacaataaaagctctcactagaataatgtttcaattcatgat
tctgccaggagtaattggaatatgacattattttcctcacatcttgggca
acattgaattttgccaggcttttcatgttaactacttgggatggaaggaa
atgaatcttattactttaatttccatttcttgctgactgctgagtggacc
tctaagttcatatccattgaagtttcctattgacaactcataactctgtg
tggcttcctctgtctttctgaataaggaggttctta
gaattctctaaaggtaaagaagtgagagaaaatggtaaaatggaagacag
tttgaaggcccactcacagaccacccaaaccgggtcttcctggatgaggt
cacaccaaacagaccacacagacttgcttcctgagtgcagtatgctgaat
ttctctttgatggggcccatttgaaggcttagtcagtaattaaggggttc
acagaagaagaaatttgtggaaacagtatgaggattattggtaaaatggc
agtttactattgcctatgagtttgactatgtacacacacacacacacaca
cacacacacacacacacatatatatatatatatacttatgaaaaatctat
ttctgtaaactttttcttaataaataattgaagaagtacacaaaatatac
aaagttggttcttgctgtattgtttccaaaaacacagagggaagcaaatt
ataagtccattaaataaaacaatttcaccaaactacatttcatccatata
aaacaatatcactgaaatgtaaaaattgtggcttaaatctcatagacatg
gcacagtgctgtagaaaataataaaacattattgggcatgccaatctgta
gtctgtgagggagagaaaggaacaaagaaagaaggaacctgttactgaca
aagtagggatttttagggacacattctaagccttctgctgtgttgaacgt
tttgttttaacttgccaaaaaaggttgagtggttttgttaataatctgaa
aaatatagaacaatttctatttgtgtgcttttgaaaggatgggagggagt
cacaatggggtacttcccacacaaaagcacaagctctagttccatcatgg
ctgtgtgtgtagaaacacaagctgagatatgttgtcagtaagggagtcag
atacgctgaaatcaatcatctgtccacccctatctttatgacctctaggc
cataaaatcataatgatgtctttctctgacagcaaagaatattctttcta
cactttacaatatgtctagaaaactttgggaactctatcttctaccttgg
gttaatgatgcttggatagtcccactgttccaaatggactcataaaccta
tcattcagctagtcatgttcctccttaggggtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_11564963_11566112
seq2: B6Ng01-098F18.b_44_1179 (reverse)

seq1  TAAGAAACCTCCTAAATCAAGAAAAAGACAGAGAGAAGCACAACAGAGTA  50
      |||| |||||||| | ||   | |||||||||| |||||   ||||||| 
seq2  TAAG-AACCTCCTTATTC---AGAAAGACAGAG-GAAGCCACACAGAGTT  45

seq1  ATGGGAGTTGTTCAAATAAGAAACTACAATGGATCATGAACTTAAGAAGT  100
      ||  |||||||   |||| |||||| |||||||| |||||||| ||| ||
seq2  AT--GAGTTGT--CAATAGGAAACTTCAATGGAT-ATGAACTT-AGAGGT  89

seq1  TCACTCAGCAGTCAGCAAGAAAATGGAAATTAAAGTAATAAGATTTCATT  150
       |||||||||||||||||| ||||||||||||||||||||||| |||| |
seq2  CCACTCAGCAGTCAGCAAG-AAATGGAAATTAAAGTAATAAGA-TTCA-T  136

seq1  TTCCTTCCATCCCAAGTAGTTAACATGAAAAGGCCTGGCAAAATTCAATG  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCCTTCCATCCCAAGTAGTTAACATGAAAA-GCCTGGCAAAATTCAATG  185

seq1  TTGCCCAAGATGTGAGGAAAATAATGTCATATTCCAATTACTCCTGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAGATGTGAGGAAAATAATGTCATATTCCAATTACTCCTGGCAG  235

seq1  AATCATGAATTGAAACATTATTCTAGTGAGAGCTTTTATTGTATTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAATTGAAACATTATTCTAGTGAGAGCTTTTATTGTATTTATCA  285

seq1  AACGCAGTATTACATATT-CCATGCATAGTGATTCACCCTGGCAGATGCG  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACGCAGTATTACATATTCCCATGCATAGTGATTCACCCTGGCAGATGCG  335

seq1  CAGAGCTTGATAAACATGCATACAAGGAGGTACATGCTAAGAAGAGTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTGATAAACATGCATACAAGGAGGTACATGCTAAGAAGAGTATC  385

seq1  ATAACACTGGTTACTATAACAAAACTTTGCAATGATCTAAAAATTCACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTGGTTACTATAACAAAACTTTGCAATGATCTAAAAATTCACTC  435

seq1  CCAAAAGGAAATGGGTAAGTAAAATTTGTTTCATATATAGTATGCAACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGAAATGGGTAAGTAAAATTTGTTTCATATATAGTATGCAACAG  485

seq1  TCTTAAAAAGAATTAGTTGGTTTTATATATACAAATCAGTACACATTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAAGAATTAGTTGGTTTTATATATACAAATCAGTACACATTTCA  535

seq1  CATCATAAATAGTTATTAAACAACAAAAATAACTTGAAGCACACCAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAAATAGTTATTAAACAACAAAAATAACTTGAAGCACACCAACAT  585

seq1  ATATTCCTGGGGATACACACACACAGATATATATATATCTGTGTGTGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTGGGGATACACACACACAGATATATATATATCTGTGTGTGTGT  635

seq1  GTGTGTATATGGGGAAATACAAAGAATGAATTGGGACACACCCAGATTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATATGGGGAAATACAAAGAATGAATTGGGACACACCCAGATTGA  685

seq1  CAGGATTTGGAGCAGGAAGTGAACATGTCAGGAAGAATAGAGAGTGAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTGGAGCAGGAAGTGAACATGTCAGGAAGAATAGAGAGTGAAAG  735

seq1  AAAAGACAGGAAATTATAGGGACTCTAGGTCCATCAATAAGCATTTTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGGAAATTATAGGGACTCTAGGTCCATCAATAAGCATTTTGAA  785

seq1  AAGAAAGGGGAAAGAGAAAAAAAAAGCAAAACTATGAAAGCAAATCTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGGAAAGAGAAAAAAAAAGCAAAACTATGAAAGCAAATCTGCC  835

seq1  CAATGATGGAAATCTGGATGCTTCTGGTTTCATTTTTGTATCTGTTTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGGAAATCTGGATGCTTCTGGTTTCATTTTTGTATCTGTTTGTA  885

seq1  CCTTAAAGTTTTTTTTTTTTTTCAAATAAAAGAAAGGAGGAAAGATGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGTTTTTTTTTTTTTTCAAATAAAAGAAAGGAGGAAAGATGAGT  935

seq1  GGAGGGGGCAAGGGAAAAATGGAAAAGAGGAGAGAAGTGGGGTCAAGGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGCAAGGGAAAAATGGAAAAGAGGAGAGAAGTGGGGTCAAGGAG  985

seq1  AAAGAGACAGTAAGGGTGGGGGAAGGAGGCAAGTTTGGGTGAGTAGGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACAGTAAGGGTGGGGGAAGGAGGCAAGTTTGGGTGAGTAGGTGG  1035

seq1  CAGCGAGGACCAGAGAGGGTGAGGGAGGGTGAGGAGGATCAGAGATAGTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAGGACCAGAGAGGGTGAGGGAGGGTGAGGAGGATCAGAGATAGTC  1085

seq1  AGGGTGCACTTAAATTCGTCATAAGAGTTTGCTCTCTAAACGATAGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCACTTAAATTCGTCATAAGAGTTTGCTCTCTAAACGATAGAATT  1135

seq1  C  1150
      |
seq2  C  1136

seq1: chr14_11400713_11401849
seq2: B6Ng01-098F18.g_66_1203

seq1  GAATTCTCTAAAGGTAAAGAAGTGAGAGAAAATGGTAAAATGGAAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAGGTAAAGAAGTGAGAGAAAATGGTAAAATGGAAGACAG  50

seq1  TTTGAAGGCCCACTCACAGACCACCCAAACCGGGTCTTCCTGGATGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGCCCACTCACAGACCACCCAAACCGGGTCTTCCTGGATGAGGT  100

seq1  CACACCAAACAGACCACACAGACTTGCTTCCTGAGTGCAGTATGCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAAACAGACCACACAGACTTGCTTCCTGAGTGCAGTATGCTGAAT  150

seq1  TTCTCTTTGATGGGGCCCATTTGAAGGCTTAGTCAGTAATTAAGGGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGATGGGGCCCATTTGAAGGCTTAGTCAGTAATTAAGGGGTTC  200

seq1  ACAGAAGAAGAAATTTGTGGAAACAGTATGAGGATTATTGGTAAAATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAAGAAATTTGTGGAAACAGTATGAGGATTATTGGTAAAATGGC  250

seq1  AGTTTACTATTGCCTATGAGTTTGACTATGTACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTATTGCCTATGAGTTTGACTATGTACACACACACACACACACA  300

seq1  CACACACACACACACACATATATATATATATATACTTATGAAAAATCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATATATATATATATATACTTATGAAAAATCTAT  350

seq1  TTCTGTAAACTTTTTCTTAATAAATAATTGAAGAAGTACACAAAATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAACTTTTTCTTAATAAATAATTGAAGAAGTACACAAAATATAC  400

seq1  AAAGTTGGTTCTTGCTGTATTGTTTCCAAAAACACAGAGGGAAGCAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGTTCTTGCTGTATTGTTTCCAAAAACACAGAGGGAAGCAAATT  450

seq1  ATAAGTCCATTAAATAAAACAATTTCACCAAACTACATTTCATCCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCATTAAATAAAACAATTTCACCAAACTACATTTCATCCATATA  500

seq1  AAACAATATCACTGAAATGTAAAAATTGTGGCTTAAATCTCATAGACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATATCACTGAAATGTAAAAATTGTGGCTTAAATCTCATAGACATG  550

seq1  GCACAGTGCTGTAGAAAATAATAAAACATTATTGGGCATGCCAATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGCTGTAGAAAATAATAAAACATTATTGGGCATGCCAATCTGTA  600

seq1  GTCTGTGAGGGAGAGAAAGGAACAAAGAAAGAAGGAACCTGTTACTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGAGGGAGAGAAAGGAACAAAGAAAGAAGGAACCTGTTACTGACA  650

seq1  AAGTAGGGATTTTTAGGGACACATTCTAAGCCTTCTGCTGTGTTGAACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGGATTTTTAGGGACACATTCTAAGCCTTCTGCTGTGTTGAACGT  700

seq1  TTTGTTTTAACTTGCCAAAAAAGGTTGAGTGG-TTTGTTAATAATCTGAA  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGTTTTAACTTGCCAAAAAAGGTTGAGTGGTTTTGTTAATAATCTGAA  750

seq1  AAATATAGAACAATTTCTATTTGTGTGCTTTTGAAAGGATGGGAGGGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGAACAATTTCTATTTGTGTGCTTTTGAAAGGATGGGAGGGAGT  800

seq1  CACAATGGGGTACTTCCCACACAAAAGCACAAGCTCTAGTTCCATCATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGGGGTACTTCCCACACAAAAGCACAAGCTCTAGTTCCATCATGG  850

seq1  CTGTGTGTGTAGAAACACAAGCTGAGATATGTTGTCAAGTAGGGGAGTCA  899
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  CTGTGTGTGTAGAAACACAAGCTGAGATATGTTGTC-AGTAAGGGAGTCA  899

seq1  GATACGCTGAAATCAATCATCTGTCCA-CCCTATCTTTATGACCTCTAGG  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATACGCTGAAATCAATCATCTGTCCACCCCTATCTTTATGACCTCTAGG  949

seq1  CCATAAAATCATAATGATGTCTTTCTCTGACAGCAAAGAATATTCTTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATCATAATGATGTCTTTCTCTGACAGCAAAGAATATTCTTTCT  999

seq1  ACACTTAACAATATGTCTAGAAAACTTT-GGAACTCTATCTTCTACCTTT  1047
      |||||| ||||||||||||||||||||| |||||||||||||||||| ||
seq2  ACACTTTACAATATGTCTAGAAAACTTTGGGAACTCTATCTTCTACC-TT  1048

seq1  GGTTTATTGATGCTTGGATAGTCCCACTG-TCCAAATGGACCCATAAAAC  1096
      || ||| |||||||||||||||||||||| ||||||||||| |||||| |
seq2  GGGTTAATGATGCTTGGATAGTCCCACTGTTCCAAATGGACTCATAAACC  1098

seq1  TATCATTCAGCTAGTTCATGTTCGCCCTGTGGGGTGTGTGT  1137
      |||||||||||||| ||||||||  |||  |||||||||||
seq2  TATCATTCAGCTAG-TCATGTTCCTCCTTAGGGGTGTGTGT  1138