BAC Information

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BAC

Clone NameB6Ng01-098M16
Chromosome18 (Build37)14 (Build37)
Map Location 29,189,858 - 29,190,29290,076,172 - 90,077,321
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098M16.bB6Ng01-098M16.g
ACCDH908774DH908775
length7321,140
definitionDH908774|Mus musculus domesticus DNA, BAC clone: B6Ng01-098M16, 5' end.DH908775|Mus musculus domesticus DNA, BAC clone: B6Ng01-098M16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,189,858 - 29,190,292)(90,076,172 - 90,077,321)
sequence
gaattctcattcaaggactcccaaatggctaaaatctttaacatctttat
ccacgagggaaatacaaatcaaaattacactgagatttcattttacacct
atcagaatggctaagttcaataatatgaatgacagctcatggtggcaaag
ttgtggaacaaggggaacattcctccatttctggtgggaggggaaattca
tacagatacaatggaaatcaatatggaagttcctcagagaattgggaatt
aatctccatcaaggtctagttataccactattaggcatatacccaacaga
cacaatatacttcccaaaggaaccttgttcaactatgattatagcagctt
tcttcaaactaacaaattctatttaaacttcaatctcactttagaacccc
aatgacgagcatagaaattctttgagtgttttatatgtatatgtatgtat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatgtgtgtgtgtgtgtgtgtggagagagagagagagagagagag
agagagagagagagagagggggtgagggagagtgatacatacggagactg
tctgagggatgtagtgtgtgtgtgaggggtatatatgtgtgtgcgagcta
gatagagagagagagagatagatatatatctgcctctctccacacacata
cacacactgagtgtgtgtgtgtgtgtgtgcgc
gaattccatgaaccccctggccatgtgtcctctgtaatattttagttcag
ttaatatattgcaaaacttatgtttaaggaggtttcaatatttactaata
caattcagtgttccaagaatataatatctagtttattctgaattcttcag
aatatactgtttatataaaagtctgaattttttctattttcccataacat
cacattagtatcaaagtcaattgtttactattactaaaggtcagtgagtt
ctattactatgtggtagttgaggtctacaattatttgcttactctttaat
aactaaactttcagatagtttaagtattaatatataaatactaagtttga
aaaaattcgtacatttatttattcaaaataaaaatcgggaaaatttcata
atgtacatatttatttatatgtaggatacaaatgtaatcttcataaagat
ggtatttttcttcttgatttgggttttgtattgagtttgaggaatggtct
tggactgccccttaacttactgagtactgtaattgtctaggcagttagtc
ccaggagccactggtctttgaatcttcagactgggatgacacggttaacc
ttgatacttggatttttttttcacatgggaatatgtttagggatcaaact
atgtgttcattcttgtatgacaaccactttaccaatagtgttctcctaac
caatgaatcttcttttagtgaaataatcaaaagcctctaaaagatactga
aaagagacttgggtaatctagactgagaatttcaattaaacaattctaca
gaatggatatttggaaaataaaaagcacttagaattagatcaagttggta
ttttctattcctctaacttccctttgttattaaagaggagacataaatat
ttttatgaaatcatttaatgttttaaaaggtgataaatattttacaaata
caaataaaccatagaaaattattatgcatattattataaactacagcata
tttagtatgtctctgccttcgatattacactttgaatataaaagaatcag
ctagcttagagagttacatgatttagtagaattaaatatatattattcat
tttggtccaggctctacctgtctctcttggaggtcctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29189858_29190292
seq2: B6Ng01-098M16.b_484_784

seq1  TATATGTATGTATGTGTATATATATATATATATATATATATATATATATA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TACATATACATATACATATTTATATGTAGGTATATATATATGTGCACATA  100
                                                      ||
seq2  ------------------------------------------------TA  2

seq1  TACATATATGTATGTATATATATACACCTACATATATATATATATATATA  150
      ||  ||||||||||||||||||||    || |||||||||||||||||||
seq2  TATGTATATGTATGTATATATATA----TATATATATATATATATATATA  48

seq1  TATACGCATGTATGTGTATATATATGTACGTGTATATATATGTGTGTGTA  200
      ||||   || ||| | ||||||||| || |||| | | | |||||||| |
seq2  TATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGGA  98

seq1  TATATATATATATATATATATATATATATATATATA-TGTGTGTGTGTGT  249
       | | | | | | | | | | | | | | | | | |  | | ||| | | 
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGTGAGGGA  148

seq1  GTGTG-TACAAATAGAAATTTATTCAACTATTAAGAAAAAGTAAAATTTC  298
      | ||| |||| |  || | |   | |   ||         |||   | | 
seq2  GAGTGATACATACGGAGACTGTCTGAGGGAT---------GTAGTGTGTG  189

seq1  AGGAAATTGGATA---GTGTTGGGAAGTAAAATATTAAACTCAGAAAAAA  345
       |  |   | |||   ||||  |  ||  | |||        ||| | | 
seq2  TGTGAGGGGTATATATGTGTGTGCGAGCTAGATA-------GAGAGAGAG  232

seq1  AGCAAATGCATTTATACGTGGATCACGTGTATATATAAGCACAGACACAG  395
      || | ||  || ||||  ||  ||       | |  |  |||| ||||| 
seq2  AG-AGATAGATATATATCTGCCTC-------TCTCCACACACATACACA-  273

seq1  GTGTGTATGTATATGTGTCTGTGTGTGTGTGTGTGTGCGC  435
                     ||  |||||||||||||||||||||
seq2  ------------CACTGAGTGTGTGTGTGTGTGTGTGCGC  301

seq1: chr14_90076172_90077321
seq2: B6Ng01-098M16.g_69_1208

seq1  GAATTCCATGAACCCCCTGGCCATGTGTCCTCTGTAATATTTTAGTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAACCCCCTGGCCATGTGTCCTCTGTAATATTTTAGTTCAG  50

seq1  TTAATATATTGCAAAACTTATGTTTAAGGAGGTTTCAATATTTACTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATTGCAAAACTTATGTTTAAGGAGGTTTCAATATTTACTAATA  100

seq1  CAATTCAGTGTTCCAAGAATATAATATCTAGTTTATTCTGAATTCTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGTGTTCCAAGAATATAATATCTAGTTTATTCTGAATTCTTCAG  150

seq1  AATATACTGTTTATATAAAAGTCTGAATTTTTTCTATTTTCCCATAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTGTTTATATAAAAGTCTGAATTTTTTCTATTTTCCCATAACAT  200

seq1  CACATTAGTATCAAAGTCAATTGTTTACTATTACTAAAGGTCAGTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAGTATCAAAGTCAATTGTTTACTATTACTAAAGGTCAGTGAGTT  250

seq1  CTATTACTATGTGGTAGTTGAGGTCTACAATTATTTGCTTACTCTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTATGTGGTAGTTGAGGTCTACAATTATTTGCTTACTCTTTAAT  300

seq1  AACTAAACTTTCAGATAGTTTAAGTATTAATATATAAATACTAAGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACTTTCAGATAGTTTAAGTATTAATATATAAATACTAAGTTTGA  350

seq1  AAAAATTCGTACATTTATTTATTCAAAATAAAAATCGGGAAAATTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCGTACATTTATTTATTCAAAATAAAAATCGGGAAAATTTCATA  400

seq1  ATGTACATATTTATTTATATGTAGGATACAAATGTAATCTTCATAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATATTTATTTATATGTAGGATACAAATGTAATCTTCATAAAGAT  450

seq1  GGTATTTTTCTTCTTGATTTGGGTTTTGTATTGAGTTTGAGGAATGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTTCTTCTTGATTTGGGTTTTGTATTGAGTTTGAGGAATGGTCT  500

seq1  TGGACTGCCCCTTAACTTACTGAGTACTGTAATTGTCTAGGCAGTTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCCCCTTAACTTACTGAGTACTGTAATTGTCTAGGCAGTTAGTC  550

seq1  CCAGGAGCCACTGGTCTTTGAATCTTCAGACTGGGATGACACGGTTAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCCACTGGTCTTTGAATCTTCAGACTGGGATGACACGGTTAACC  600

seq1  TTGATACTTGGATTTTTTTTTCACATGGGAATATGTTTAGGGATCAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTTGGATTTTTTTTTCACATGGGAATATGTTTAGGGATCAAACT  650

seq1  ATGTGTTCATTCTTGTATGACAACCACTTTACCAATAGTGTTCTCCTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCATTCTTGTATGACAACCACTTTACCAATAGTGTTCTCCTAAC  700

seq1  CAATGAATCTTCTTTTAGTGAAATAATCAAAAGCCTCTAAAAGATACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAATCTTCTTTTAGTGAAATAATCAAAAGCCTCTAAAAGATACTGA  750

seq1  AAAGAGACTTGGGTAATCTAGACTGAGAATTTCAATTAAACAATTCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGACTTGGGTAATCTAGACTGAGAATTTCAATTAAACAATTCTACA  800

seq1  GAATGGATATTTGGAAAATAAAAAGCACTTAGAATTAGATCAAGTTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATATTTGGAAAATAAAAAGCACTTAGAATTAGATCAAGTTGGTA  850

seq1  TTTTCTATTCCTCTAACTTCCCTTTGTTATTAAAGAGGAGACATAAATA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTTCTATTCCTCTAACTTCCCTTTGTTATTAAAGAGGAGACATAAATAT  900

seq1  TTTTATGAAATCATTTAATGTTTTAAAAGGTGATAAATATTTTACAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAAATCATTTAATGTTTTAAAAGGTGATAAATATTTTACAAATA  950

seq1  CAAATAAACCATAGAAAAATTAATTATGCATATTATTATAAAACTTAACA  999
      ||||||||||||||||||  | ||||||||||||||||| |||||  |||
seq2  CAAATAAACCATAGAAAA--TTATTATGCATATTATTAT-AAACT--ACA  995

seq1  GCATATTTAGTATGTCTCTGCCTTCGATATTTACAACTTTGAATATAAAA  1049
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  GCATATTTAGTATGTCTCTGCCTTCGATA-TTAC-ACTTTGAATATAAAA  1043

seq1  AGAAATCAGCTAGCTTAGAGAGTAAACCAATAGATTTAGTAGAA-TAAAT  1098
         |||||||||||||||||||| |  ||   |||||||||||| |||||
seq2  --GAATCAGCTAGCTTAGAGAGTTA--CA--TGATTTAGTAGAATTAAAT  1087

seq1  ATATATTAATCATTTTGGTCCACAGCTCTACCTGTC-CTCCTGGAGGT-C  1146
      |||||||| |||||||||||||  |||||||||||| ||| ||||||| |
seq2  ATATATTATTCATTTTGGTCCA-GGCTCTACCTGTCTCTCTTGGAGGTCC  1136

seq1  TGTA  1150
      ||||
seq2  TGTA  1140