BAC Information

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BAC

Clone NameB6Ng01-098M17
Chromosome14 (Build37)
Map Location 104,334,693 - 104,463,768
singlet/doubletdoublet
Overlap genenone
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098M17.bB6Ng01-098M17.g
ACCDH908776DH908777
length1,1591,107
definitionDH908776|Mus musculus domesticus DNA, BAC clone: B6Ng01-098M17, 5' end.DH908777|Mus musculus domesticus DNA, BAC clone: B6Ng01-098M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,462,605 - 104,463,768)(104,334,693 - 104,335,812)
sequence
gaattctttttcacccatgtctccattaagatgggaaaggcaaacagaag
aaagggagaagatacttctagtacacagtaccctgcttagtgtctactga
agccttccccggagatggctcagtagataacatttgtcatacaagccaga
cttagcaagacaacatctccaactttcatcacatttcaaaacacccacag
ttttctaagtctggatactgccagatgccacctacccgtgtgtagaagaa
aagagaaagagatagctgattttcaccccactgcgcatgtagtatgacta
tgtttacaaaataattggatctaatctagtaatgttggtgatgcatgcaa
cttatcacctgcctctttcacagatttgtttggggatacataatcaagac
atcctttatacttatcattaccagaaaatcagtctattacacttaaatgg
atgaattacactatactttcacaaagcaattcctaaaattgacagcattt
aaaaaaaaaacacaaaaatgaacctaagggcttgggtccttttaggctgt
ctatcctgcagacacattcctcccagtggcatctgtttttgaaggtgatt
agttactaactagcagagcctttatgttttcatgtaatgccctttctcag
cttagcatccggcttcccttcactggtaccagttttcatactagaaaatt
ttccttgtttctccctcattttaataatttgtgtggctaaactcaattat
tatctgtagcatcagaatttccagaaatatagtcaatttgaattttaata
tattttaatgtcactgttctttaactgtaagatttaatatgattccctgt
attcaacagcctgttactattattatttcagccacaaaatggcagcattc
ccttccacacagccttttcattttatcatgatgaaatactttttttcaca
tttaattattaatacattttaagcatgaggagattctgtttcatacacat
gattttataatacttattctcggtgaaaatattcttcatgatactgaaaa
catataagcgccacagtaattatgtagtcgttctaatgtagaacactgtt
agagggtattatgctaggaaatttatggaagggtgccattattttctgga
taggaaata
gaattcaagaagggaaaatggctcaaggttgtggaaattgaaatgacatg
caggaatactactgagcatgctcggttttcctcataaagttttgacagaa
aataaatgagaagacattatgaaagtgtattagtatcagggtttgccctt
aagggtgtttgcttacaggtgttagctgctaagattattaactgaataga
atagctgtttttttcagccccagtggcgagtcattgccttccacagagca
gcccatgagtaacgaatcaaaatgtgcaacatgacagaccctccctttta
gttgaacaaattgtagttacagcatttggtttgaattttgtttgattcag
atattcattggtgcagatactgatttttttctgtagctagtaatgcagtg
aagagccatagagaggagacaagaagtacacaaggcctggtaaggatgca
agcactgcttctgaaaatgtaagcagtaatgaaggcagagaaaggggggc
tgctattaaaatacgtttttaagtttccatctcctttcaagcagttattg
ttgtgtgtatctccataggtttgtgtgcttggacagctaggcaggtgata
acgcacaaagattgacattgcaatcttgcacaagatgagcgatggcggct
aacttgtgtctaatgacttccaagtcattctgtccatgaaagtcacaaaa
tcagacaaggtttggaagtggaagaaactttactaattgcataatcatta
ttaattttgtcattaatattaatatttatttcaattccaccttaccaaat
atctcatttcatttaatatgtgagaaataatgagtcttcaagatgaaata
atattaaagtaattgaagttagtggctaaacggagactgtgaggacatga
cactaattcctcctctgcttcctttcttttttctttctcttctttttttt
tcttttttttttttttttagatttgtaccaggtaagtatgcatactttat
tctttatttcctgaattttaaacacaaaattcttgggagtttagattgtt
gccttagtgaataatttttgtatataacccatacatcatacaatatctca
gttagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104462605_104463768
seq2: B6Ng01-098M17.b_46_1204 (reverse)

seq1  TATTTCCCTACTCCAGAAAATTATTGTCACCCTTTCCATAATTTTCTTTA  50
      ||||| |||| ||||||||| || || ||||| |||||||| ||||  ||
seq2  TATTT-CCTA-TCCAGAAAA-TAATGGCACCC-TTCCATAAATTTC-CTA  45

seq1  GCATAATACCCTCTAAACAGTGTTCTACAATTAGAACGACTACATAATTT  100
      |||||||||||||| ||||||||||||| |||||||||||||||||| ||
seq2  GCATAATACCCTCT-AACAGTGTTCTAC-ATTAGAACGACTACATAA-TT  92

seq1  ACTGT-GCGCTATAATGTTTTCAGTATTCAATGAAGAATATTTTCA-CGA  148
      ||||| |||||   |||||||||||||   |||||||||||||||| |||
seq2  ACTGTGGCGCTTATATGTTTTCAGTAT--CATGAAGAATATTTTCACCGA  140

seq1  GAATACAGTTATTATAAAATCATGTGGTATGAAACAGAATCTCCTCATGC  198
      ||||| || |||||||||||||||| ||||||||||||||||||||||||
seq2  GAATA-AG-TATTATAAAATCATGT-GTATGAAACAGAATCTCCTCATGC  187

seq1  TTAAATTGTATTAATAATTAATTGTG-AGAAAAGTATTTCATCATGAT-A  246
      ||||| ||||||||||||||| |||| | ||||||||||||||||||| |
seq2  TTAAAATGTATTAATAATTAAATGTGAAAAAAAGTATTTCATCATGATAA  237

seq1  AATG-AAAGGCTGTGTGGAA-GGAATGCTGCCATTTTGTGGCTGAAATAA  294
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATGAAAAGGCTGTGTGGAAGGGAATGCTGCCATTTTGTGGCTGAAATAA  287

seq1  T-ATAGTAACAGGCTGTTGAATACAGGGAATCATATTAAATCTTACAGTT  343
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAACAGGCTGTTGAATACAGGGAATCATATTAAATCTTACAGTT  337

seq1  AAAGAACAGTGACATTAAAATATATTAAAATTCAAATTGACTATATTTCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGTGACATTAAAATATATTAAAATTCAAATTGACTATATTTCT  387

seq1  GGAAATTCTGATGCTACAGATAATAATTGAGTTTAGCCACAC-AATTATT  442
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAAATTCTGATGCTACAGATAATAATTGAGTTTAGCCACACAAATTATT  437

seq1  AAAATGAGGGAGAAACAAGGAAAATTTTCTAGTATGAAAACTGGTACCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGGAGAAACAAGGAAAATTTTCTAGTATGAAAACTGGTACCAG  487

seq1  TGAAGGGAAGCCGGATGCTAAGCTGAGAAAGGGCATTACATGAAAACATA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAGCCGGATGCTAAGCTGAGAAAGGGCATTACATGAAAACATA  537

seq1  AAGGCTCTGCTAGTTAGTAACTAATCACCTTCAAAAACAGATGCCACTGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTGCTAGTTAGTAACTAATCACCTTCAAAAACAGATGCCACTGG  587

seq1  GAGGAATGTGTCTGCAGGATAGACAGCCTAAAAGGACCCAAGCCCTTAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGTGTCTGCAGGATAGACAGCCTAAAAGGACCCAAGCCCTTAGG  637

seq1  TTCATTTTTGTGTTTTTTTTTTAAATGCTGTCAATTTTAGGAATTGCTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTGTGTTTTTTTTTTAAATGCTGTCAATTTTAGGAATTGCTTT  687

seq1  GTGAAAGTATAGTGTAATTCATCCATTTAAGTGTAATAGACTGATTTTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTATAGTGTAATTCATCCATTTAAGTGTAATAGACTGATTTTCT  737

seq1  GGTAATGATAAGTATAAAGGATGTCTTGATTATGTATCCCCAAACAAATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGATAAGTATAAAGGATGTCTTGATTATGTATCCCCAAACAAATC  787

seq1  TGTGAAAGAGGCAGGTGATAAGTTGCATGCATCACCAACATTACTAGATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAGGCAGGTGATAAGTTGCATGCATCACCAACATTACTAGATT  837

seq1  AGATCCAATTATTTTGTAAACATAGTCATACTACATGCGCAGTGGGGTGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAATTATTTTGTAAACATAGTCATACTACATGCGCAGTGGGGTGA  887

seq1  AAATCAGCTATCTCTTTCTCTTTTCTTCTACACACGGGTAGGTGGCATCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCTATCTCTTTCTCTTTTCTTCTACACACGGGTAGGTGGCATCT  937

seq1  GGCAGTATCCAGACTTAGAAAACTGTGGGTGTTTTGAAATGTGATGAAAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTATCCAGACTTAGAAAACTGTGGGTGTTTTGAAATGTGATGAAAG  987

seq1  TTGGAGATGTTGTCTTGCTAAGTCTGGCTTGTATGACAAATGTTATCTAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGTTGTCTTGCTAAGTCTGGCTTGTATGACAAATGTTATCTAC  1037

seq1  TGAGCCATCTCCGGGGAAGGCTTCAGTAGACACTAAGCAGGGTACTGTGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCCGGGGAAGGCTTCAGTAGACACTAAGCAGGGTACTGTGT  1087

seq1  ACTAGAAGTATCTTCTCCCTTTCTTCTGTTTGCCTTTCCCATCTTAATGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGTATCTTCTCCCTTTCTTCTGTTTGCCTTTCCCATCTTAATGG  1137

seq1  AGACATGGGTGAAAAAGAATTC  1164
      ||||||||||||||||||||||
seq2  AGACATGGGTGAAAAAGAATTC  1159

seq1: chr14_104334693_104335812
seq2: B6Ng01-098M17.g_67_1173

seq1  GAATTCAAGAAGGGAAAATGGCTCAAGGTTGTGGAAATTGAAATGACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGGGAAAATGGCTCAAGGTTGTGGAAATTGAAATGACATG  50

seq1  CAGGAATACTACTGAGCATGCTCGGTTTTCCTCATAAAGTTTTGACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATACTACTGAGCATGCTCGGTTTTCCTCATAAAGTTTTGACAGAA  100

seq1  AATAAATGAGAAGACATTATGAAAGTGTATTAGTATCAGGGTTTGCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGAGAAGACATTATGAAAGTGTATTAGTATCAGGGTTTGCCCTT  150

seq1  AAGGGTGTTTGCTTACAGGTGTTAGCTGCTAAGATTATTAACTGAATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGTTTGCTTACAGGTGTTAGCTGCTAAGATTATTAACTGAATAGA  200

seq1  ATAGCTGTTTTTTTCAGCCCCAGTGGCGAGTCATTGCCTTCCACAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTTTTTTTCAGCCCCAGTGGCGAGTCATTGCCTTCCACAGAGCA  250

seq1  GCCCATGAGTAACGAATCAAAATGTGCAACATGACAGACCCTCCCTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGAGTAACGAATCAAAATGTGCAACATGACAGACCCTCCCTTTTA  300

seq1  GTTGAACAAATTGTAGTTACAGCATTTGGTTTGAATTTTGTTTGATTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACAAATTGTAGTTACAGCATTTGGTTTGAATTTTGTTTGATTCAG  350

seq1  ATATTCATTGGTGCAGATACTGATTTTTTTCTGTAGCTAGTAATGCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTGGTGCAGATACTGATTTTTTTCTGTAGCTAGTAATGCAGTG  400

seq1  AAGAGCCATAGAGAGGAGACAAGAAGTACACAAGGCCTGGTAAGGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCATAGAGAGGAGACAAGAAGTACACAAGGCCTGGTAAGGATGCA  450

seq1  AGCACTGCTTCTGAAAATGTAAGCAGTAATGAAGGCAGAGAAAGGGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCTTCTGAAAATGTAAGCAGTAATGAAGGCAGAGAAAGGGGGGC  500

seq1  TGCTATTAAAATACGTTTTTAAGTTTCCATCTCCTTTCAAGCAGTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAAAATACGTTTTTAAGTTTCCATCTCCTTTCAAGCAGTTATTG  550

seq1  TTGTGTGTATCTCCATAGGTTTGTGTGCTTGGACAGCTAGGCAGGTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTATCTCCATAGGTTTGTGTGCTTGGACAGCTAGGCAGGTGATA  600

seq1  ACGCACAAAGATTGACATTGCAATCTTGCACAAGATGAGCGATGGCGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACAAAGATTGACATTGCAATCTTGCACAAGATGAGCGATGGCGGCT  650

seq1  AACTTGTGTCTAATGACTTCCAAGTCATTCTGTCCATGAAAGTCACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGTCTAATGACTTCCAAGTCATTCTGTCCATGAAAGTCACAAAA  700

seq1  TCAGACAAGGTTTGGAAGTGGAAGAAACTTTACTAATTGCATAATCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAGGTTTGGAAGTGGAAGAAACTTTACTAATTGCATAATCATTA  750

seq1  TTAATTTTGTCATTAATATTAATATTTATTTCAATTCCACCTTACCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTGTCATTAATATTAATATTTATTTCAATTCCACCTTACCAAAT  800

seq1  ATCTCATTTCATTTAATATGTGAGAAATAATGAGTCTTCAAGATGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTCATTTAATATGTGAGAAATAATGAGTCTTCAAGATGAAATA  850

seq1  ATATTAAAGTTAATTGAAGTTAGTGGCTAAACGGAGACTGTGAGGACATG  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAG-TAATTGAAGTTAGTGGCTAAACGGAGACTGTGAGGACATG  899

seq1  ACACTAATTCCTCCTCTGCTTCCTTTCTTTTTTTCTTTCTTCTTCTTTTT  950
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  ACACTAATTCCTCCTCTGCTTCCTTTC-TTTTTTCTTTC-TCTTCTTTTT  947

seq1  TTTTTCTTTTTTTTTTTTTTTTTAGATTTGTTACCAGGTAAGTATGCATA  1000
      ||||   ||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTT--CTTTTTTTTTTTTTTTTAGATTTG-TACCAGGTAAGTATGCATA  994

seq1  CTTTATTCTTTATTTACTTGAATTTTAAACACAAAATATCTTGGAGTTTT  1050
      ||||||||||||||| | ||||||||||||||||||| ||||||   |||
seq2  CTTTATTCTTTATTT-CCTGAATTTTAAACACAAAAT-TCTTGGGAGTTT  1042

seq1  AGAATTGTTTGCATTAGTGATTAATTTATTGTATTATAACCAATACATCA  1100
      || |||| |||| ||||||| |||||| ||||| ||||||| ||||||| 
seq2  AG-ATTG-TTGCCTTAGTGAATAATTT-TTGTA-TATAACCCATACATC-  1087

seq1  ATACAATATTCTAGTTAGCA  1120
      |||||||||   ||||||||
seq2  ATACAATATCTCAGTTAGCA  1107