BAC Information

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BAC

Clone NameB6Ng01-098N15
Chromosome5 (Build37)14 (Build37)
Map Location 135,140,475 - 135,140,55772,855,269 - 72,855,511
singlet/doubletsingletsinglet
Overlap geneLimk1
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081
Downstream geneEln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098N15.bB6Ng01-098N15.g
ACCDH908815DH908816
length90243
definitionDH908815|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N15, 5' end.DH908816|Mus musculus domesticus DNA, BAC clone: B6Ng01-098N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,140,475 - 135,140,557)(72,855,269 - 72,855,511)
sequence
tgcactaaatccatctggccctggttatttttgtgtttttgtttgtttgt
ttgtttggttggttggttggttggttggttggtttgattt
cctgtagatccaggttgatgactttgtattttgggccaagacccttaggg
aagaggtataagtagagtgtggggcctgcagatgaagagaaggccagcag
tagaatgggaaagcagagaggaatctggccagggcaagaaggctgaaggc
tgggcgcatccccataggatcctggtgcataggggttggaatgaatgagt
gaatgaagataggtagattgtgagagaataaggatgtgggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135140475_135140557
seq2: B6Ng01-098N15.b_83_144 (reverse)

seq1  AAATCAAACCAAACCAAACCAAACCAAACCAACCACCAAACCAACCACCA  50
                ||| ||||||||  | ||||||||| | |||||||||   
seq2  ----------AAATCAAACCAA--CCAACCAACCAACCAACCAACCA---  35

seq1  CTATCACCACCAAACAAACAAAC--AAACACAAAA  83
              | |||||||||||||  ||||||||||
seq2  --------AACAAACAAACAAACAAAAACACAAAA  62

seq1: chr14_72855269_72855511
seq2: B6Ng01-098N15.g_75_317

seq1  CCTGTAGATCCAGGTTGATGACTTTGTATTTTGGGCCAAGACCCTTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGATCCAGGTTGATGACTTTGTATTTTGGGCCAAGACCCTTAGGG  50

seq1  AAGAGGTATAAGTAGAGTGTGGGGCCTGCAGATGAAGAGAAGGCCAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTATAAGTAGAGTGTGGGGCCTGCAGATGAAGAGAAGGCCAGCAG  100

seq1  TAGAATGGGAAAGCAGAGAGGAATCTGGCCAGGGCAAGAAGGCTGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGGAAAGCAGAGAGGAATCTGGCCAGGGCAAGAAGGCTGAAGGC  150

seq1  TGGGCGCATCCCCATAGGATCCTGGTGCATAGGGGTTGGAATGAATGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGCATCCCCATAGGATCCTGGTGCATAGGGGTTGGAATGAATGAGT  200

seq1  GAATGAAGATAGGTAGATTGTGAGAGAATAAGGATGTGGGTGT  243
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGATAGGTAGATTGTGAGAGAATAAGGATGTGGGTGT  243