BAC Information

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BAC

Clone NameB6Ng01-099E04
Chromosome14 (Build37)
Map Location 71,931,107 - 72,053,471
singlet/doubletdoublet
Overlap geneLOC100043136
Upstream geneLgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC668477, LOC668482, LOC675957, Fndc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E04.bB6Ng01-099E04.g
ACCDH909104DH909105
length1,1461,055
definitionDH909104|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E04, 5' end.DH909105|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,052,308 - 72,053,471)(71,931,107 - 71,932,170)
sequence
gaattcccacaagaggaccaggcagagagataaaatcatgacaacatgcc
acattgccctacaatttctggacctttacttctagatagttagccacttg
ggactatatccttggctttgctgaggccatgtctgaaattgtctataacc
acagaagaatatgggatttcatgtatgggttagactctcagattctaggc
tggaagttcagccttctcatttggatcagatgaaactacaccctaaactg
ctctctttacagaccaggattcttgttcccccatcttgatcttgccccct
aaatctccaagaaccaattgtgttcccatcttcggctctctttaggctct
catctcctatctcccctttaggcacttttcattgaaaatccattaccacc
tccctatttgtaaagttgtagcagatcttaaatccaaccaacattccccc
aaccatctttgtctctctttctccttggccttagatcaatctgttgcctc
ccagatcacccatacttgacctgctaaaatgcttccctgcgatttattta
tttatttgtggaaaatgaggttccaattacaacatatccatacaatggaa
tgtctatttagcaatttaaaataatggggtagaagcaaacttaatgaggt
ggaaaagtgttcacaacaatgcattttggggagaggggtgacaaaattgt
gtgttggcaaggctctcatttttatgaaaaatgttcattttttaatagga
aaagatatgtgtaatcaaagcaaacactgttgagaccatgtgtacctata
tgttcacagtggtcatctagcttctgggcagtgaggtaattgcaaatgag
acattcttgtttgtgcttttagtgattttgaatttgatttacaatgagga
aacattacttttgtaacaaggaaaaaacaatcatgaacattttttatttt
ttaccttgagctatcagccaaatgtcttttgcacacctctggccatactc
ctgctgtggctttctgtgtttatcacgtggcatatgccgttgttatcctc
agcaaatgagccactgaatagactcaattgtgtgagcgaactatgctctt
ggtggtcagaaaaattaaataaatgatcaccaggatagagaaagaa
gaattcagctcagcagaaggtcctttagacactacaggccaagacaagaa
gggtatttgtatctgcaagggtttgtgtgcttaggataatgagagatggg
caggctaagagtcagagaaaggaatgcatataaacacacagctatctcca
agtgtggtcagctgctgctgacagtctccaaacattggggttgtgttcgt
aggaaaacagctgttctgggaatctctacctgcagcagtgttggtagcag
cactaggtaatcatactgccagaattccaatgtgttctatttattgatgt
tcaatggattcactgctattgtctcaaagcaaactttaaaaaaattaaag
tagaagattggtaatcattgcacagggtgccccgtgcctcctgtgcctta
actgtgtttcccagctcaactttctccatctgcactctccctgaatcttc
tagtctgagaactgccctagatcacctacttggttttcactccccttgat
tgatctcacttagccatactctcaggtctagggtcctggctttgagtcct
tggattccagtgcatgcccagcctttccgtagaaagcttagttatgcata
gcccacaatagccattttaacccttcatcagggtagaggtggaaatgcac
actaagattttcttgcatttgtgcctttggtttgatttgtccaataatgc
ttccccttttcatcctgggtttgtccccgcttacaatagcgctctgttca
tatcagtggaattttcttcacaagccttcgtcttgtcgttccaaatattc
cattttgaaacaacccccctcccctggtgccaccacatctgggcagaact
cattgcctacagcctcttgtcagatgttttaggcagaggcccctctgtgg
cccaggttcttcactgtagcctgtagtccttacagccccgagctggagtg
tggggagaagtcatcagttcacgtctgtggggttgctcctccttcttgag
aaactcaagtgtagtctgcctttctgcatgcagcaaggctttcaggctat
ttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_72052308_72053471
seq2: B6Ng01-099E04.b_46_1191 (reverse)

seq1  TTCTTTTCCTCTATCTGGGTTGATCATTTTTATTTTTATTTTTCTGGACC  50
      ||||||  |||||||  || |||||||||    ||| |||||||| ||||
seq2  TTCTTT--CTCTATCCTGG-TGATCATTT---ATTTAATTTTTCT-GACC  43

seq1  ACCAAGAGCCATAGTCTGCTCACACAAATTGAGTCTTATTTCAGTTGGCT  100
      |||||||| ||||||  |||||||| ||||||||||   ||||| |||||
seq2  ACCAAGAG-CATAGTTCGCTCACAC-AATTGAGTCT--ATTCAG-TGGCT  88

seq1  CATTTGCTGAGAATAACAACGGCATATGCCAACGTGGATAAACACAGAAA  150
      ||||||||||| |||||||||||||||||| |||| ||||||||||||||
seq2  CATTTGCTGAGGATAACAACGGCATATGCC-ACGT-GATAAACACAGAAA  136

seq1  GGCCACAGCAGGAGTATGGGCCAGAGGTTGTGCAAAAGACATTTGGCTGA  200
       |||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  -GCCACAGCAGGAGTAT-GGCCAGAGG-TGTGCAAAAGACATTTGGCTGA  183

seq1  TAGCTCAAGGTAAAAAAT-AAAAATGTTCATGATTGTTTTTTTCCTTGTT  249
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TAGCTCAAGGTAAAAAATAAAAAATGTTCATGATTG-TTTTTTCCTTGTT  232

seq1  ACAAAAGTAATGTTTCCTCATTGTAAATCAAATTCAAAATCACTGAAAAG  299
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAAAAGTAATGTTTCCTCATTGTAAATCAAATTCAAAATCACT-AAAAG  281

seq1  CACAAACAAGAATGTCTCATTTGCAATTACCTCACTGCCCAGAAGCTAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACAAGAATGTCTCATTTGCAATTACCTCACTGCCCAGAAGCTAGA  331

seq1  TGACCACTGTGAACATATAGGTACACATGGTCTCAACAGTGTTTGCTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTGTGAACATATAGGTACACATGGTCTCAACAGTGTTTGCTTTG  381

seq1  ATTACACATATCTTTTCCTATTAAAAAATGAACATTTTTCATAAAAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACATATCTTTTCCTATTAAAAAATGAACATTTTTCATAAAAATGA  431

seq1  GAGCCTTGCCAACACACAATTTTGTCACCCCTCTCCCCAAAATGCATTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGCCAACACACAATTTTGTCACCCCTCTCCCCAAAATGCATTGT  481

seq1  TGTGAACACTTTTCCACCTCATTAAGTTTGCTTCTACCCCATTATTTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACACTTTTCCACCTCATTAAGTTTGCTTCTACCCCATTATTTTAA  531

seq1  ATTGCTAAATAGACATTCCATTGTATGGATATGTTGTAATTGGAACCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAATAGACATTCCATTGTATGGATATGTTGTAATTGGAACCTCA  581

seq1  TTTTCCACAAATAAATAAATAAATCGCAGGGAAGCATTTTAGCAGGTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACAAATAAATAAATAAATCGCAGGGAAGCATTTTAGCAGGTCAA  631

seq1  GTATGGGTGATCTGGGAGGCAACAGATTGATCTAAGGCCAAGGAGAAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGTGATCTGGGAGGCAACAGATTGATCTAAGGCCAAGGAGAAAGA  681

seq1  GAGACAAAGATGGTTGGGGGAATGTTGGTTGGATTTAAGATCTGCTACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGATGGTTGGGGGAATGTTGGTTGGATTTAAGATCTGCTACAA  731

seq1  CTTTACAAATAGGGAGGTGGTAATGGATTTTCAATGAAAAGTGCCTAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAATAGGGAGGTGGTAATGGATTTTCAATGAAAAGTGCCTAAAG  781

seq1  GGGAGATAGGAGATGAGAGCCTAAAGAGAGCCGAAGATGGGAACACAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATAGGAGATGAGAGCCTAAAGAGAGCCGAAGATGGGAACACAATT  831

seq1  GGTTCTTGGAGATTTAGGGGGCAAGATCAAGATGGGGGAACAAGAATCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGGAGATTTAGGGGGCAAGATCAAGATGGGGGAACAAGAATCCT  881

seq1  GGTCTGTAAAGAGAGCAGTTTAGGGTGTAGTTTCATCTGATCCAAATGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTAAAGAGAGCAGTTTAGGGTGTAGTTTCATCTGATCCAAATGAG  931

seq1  AAGGCTGAACTTCCAGCCTAGAATCTGAGAGTCTAACCCATACATGAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAACTTCCAGCCTAGAATCTGAGAGTCTAACCCATACATGAAAT  981

seq1  CCCATATTCTTCTGTGGTTATAGACAATTTCAGACATGGCCTCAGCAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTCTTCTGTGGTTATAGACAATTTCAGACATGGCCTCAGCAAAG  1031

seq1  CCAAGGATATAGTCCCAAGTGGCTAACTATCTAGAAGTAAAGGTCCAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATATAGTCCCAAGTGGCTAACTATCTAGAAGTAAAGGTCCAGAA  1081

seq1  ATTGTAGGGCAATGTGGCATGTTGTCATGATTTTATCTCTCTGCCTGGTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGGGCAATGTGGCATGTTGTCATGATTTTATCTCTCTGCCTGGTC  1131

seq1  CTCTTGTGGGAATTC  1164
      |||||||||||||||
seq2  CTCTTGTGGGAATTC  1146

seq1: chr14_71931107_71932170
seq2: B6Ng01-099E04.g_70_1123

seq1  GAATTCAGCTCTGCAGAAGGTCCTTTAGACACTACAGGCCAAGACAAGAA  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTCAGCAGAAGGTCCTTTAGACACTACAGGCCAAGACAAGAA  50

seq1  GGGTATTTGTATCTGCAAGGGTTTGTGTGCTTAGGATAATGAGAGATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTTGTATCTGCAAGGGTTTGTGTGCTTAGGATAATGAGAGATGGG  100

seq1  CAGGCTAAGAGTCAGAGAAAGGAATGCATATAAACACACAGCTATCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAGAGTCAGAGAAAGGAATGCATATAAACACACAGCTATCTCCA  150

seq1  AGTGTGGTCAGCTGCTGCTGACAGTCTCCAAACATTGGGGTTGTGTTCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTCAGCTGCTGCTGACAGTCTCCAAACATTGGGGTTGTGTTCGT  200

seq1  AGGAAAACAGCTGTTCTGGGAATCTCTACCTGCAGCAGTGTTGGTAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAGCTGTTCTGGGAATCTCTACCTGCAGCAGTGTTGGTAGCAG  250

seq1  CACTAGGTAATCATACTGCCAGAATTCCAATGTGTTCTATTTATTGATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTAATCATACTGCCAGAATTCCAATGTGTTCTATTTATTGATGT  300

seq1  TCAATGGATTCACTGCTATTGTCTCAAAGCAAACTTTAAAAAAATTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGATTCACTGCTATTGTCTCAAAGCAAACTTTAAAAAAATTAAAG  350

seq1  TAGAAGATTGGTAATCATTGCACAGGGTGCCCCGTGCCTCCTGTGCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATTGGTAATCATTGCACAGGGTGCCCCGTGCCTCCTGTGCCTTA  400

seq1  ACTGTGTTTCCCAGCTCAACTTTCTCCATCTGCACTCTCCCTGAATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTTCCCAGCTCAACTTTCTCCATCTGCACTCTCCCTGAATCTTC  450

seq1  TAGTCTGAGAACTGCCCTAGATCACCTACTTGGTTTTCACTCCCCTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGAGAACTGCCCTAGATCACCTACTTGGTTTTCACTCCCCTTGAT  500

seq1  TGATCTCACTTAGCCATACTCTCAGGTCTAGGGTCCTGGCTTTGAGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCACTTAGCCATACTCTCAGGTCTAGGGTCCTGGCTTTGAGTCCT  550

seq1  TGGATTCCAGTGCATGCCCAGCCTTTCCGTAGAAAGCTTAGTTATGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCCAGTGCATGCCCAGCCTTTCCGTAGAAAGCTTAGTTATGCATA  600

seq1  GCCCACAATAGCCATTTTAACCCTTCATCAGGGTAGAGGTGGAAATGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAATAGCCATTTTAACCCTTCATCAGGGTAGAGGTGGAAATGCAC  650

seq1  ACTAAGATTTTCTTGCATTTGTGCC-TTGGTTTGATTTGTCCAATAATGC  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTAAGATTTTCTTGCATTTGTGCCTTTGGTTTGATTTGTCCAATAATGC  700

seq1  TTCCCCTTTTCATCCTGGGTTTGTCCCCGCTTACAATAGCGCTCTGTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTTCATCCTGGGTTTGTCCCCGCTTACAATAGCGCTCTGTTCA  750

seq1  TATCAGTGGAATTTTCTTCACAAGCCTTCGTCTTGTCGTTCCAAATATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGGAATTTTCTTCACAAGCCTTCGTCTTGTCGTTCCAAATATTC  800

seq1  CA-TTTGAAACAACCCCCCTCCCCTGGTGCCACCACATCTGGGCAGAACT  848
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAACAACCCCCCTCCCCTGGTGCCACCACATCTGGGCAGAACT  850

seq1  CAGTGCCAACAGCCTCCTGTCAGATGTTTTTAGGCAGAGGCCCCTCTGTG  898
      || |||| |||||||| ||||||||| |||||||||||||||||||||||
seq2  CATTGCCTACAGCCTCTTGTCAGATG-TTTTAGGCAGAGGCCCCTCTGTG  899

seq1  GCCCAGGGTTCTTCACTGTAGCCTGTAGTCCTTACAGCCCCGAGCTGGCA  948
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCCA-GGTTCTTCACTGTAGCCTGTAGTCCTTACAGCCCCGAGCTGG-A  947

seq1  GTGTGGGGAGAGGTCACTCAGTTCAGCGTCGGTGGGGTTTGCATCCTCCT  998
      ||||||||||| |||| |||||||| |||| |||||| |||| |||||||
seq2  GTGTGGGGAGAAGTCA-TCAGTTCA-CGTCTGTGGGG-TTGC-TCCTCCT  993

seq1  CCTTGAGACACTCAGAGTGTCAGTCTGCCCTTTCTGCATGCAGCAAGGGC  1048
       ||||||| ||||| ||||| |||||| |||||||||||||||||| |||
seq2  TCTTGAGAAACTCA-AGTGT-AGTCTG-CCTTTCTGCATGCAGCAA-GGC  1039

seq1  TTTCAGGGCTATTTTT  1064
      ||||| ||||||||||
seq2  TTTCA-GGCTATTTTT  1054