BAC Information

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BAC

Clone NameB6Ng01-099I19
Chromosome14 (Build37)
Map Location 4,547,928 - 4,731,665
singlet/doubletdoublet
Overlap geneLOC100041177, LOC100041162, LOC100040889, LOC100040900, LOC100040917, LOC100040928, EG666560, LOC666555
Upstream geneLOC100040544, LOC100040797, LOC100040555, LOC100040565, LOC100040578, LOC100040807, LOC100040859, LOC100040870, LOC100040880, LOC100040615, LOC100040923, LOC100040621, LOC100040641, LOC100040652, LOC100040935, LOC100040852, LOC100040674, LOC100040906, LOC100040688, LOC100040701, LOC100040897, LOC100041012, LOC100041019, ENSMUSG00000068790, LOC100041054, LOC666442, LOC100040793, LOC100041076, LOC100040801, LOC666336, LOC100041100, LOC100040808, LOC100041119, 2610042L04Rik, LOC100041139, LOC100041151
Downstream geneEG666549, LOC100041262, LOC665981, LOC100041283, LOC100040996, LOC673676, LOC100041007, LOC100041317, LOC100041306, LOC100041024, LOC100041336, EG666815, LOC666808, EG666800, LOC100041374, 4930555G01Rik, EG666772, LOC666765, LOC100041401, LOC100041105, EG666750, LOC666743, LOC100041447, LOC673138, LOC666740, LOC641258, LOC673685, LOC100041158, LOC100041501, LOC100041515, LOC100041184, EG666706, LOC100041195
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099I19.bB6Ng01-099I19.g
ACCDH909314DH909315
length1,178971
definitionDH909314|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I19, 5' end.DH909315|Mus musculus domesticus DNA, BAC clone: B6Ng01-099I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,547,928 - 4,549,113)(4,730,688 - 4,731,665)
sequence
gaattcattcttttcaatagctgagtagttcttcatgggacaaatgtacc
atattttctgtatccattcctctgttgatggacatcttggttctttccag
ctactggctatcatgattaaggctgctatgaacctaatggagctagtgca
gattcaaggcaatttatatactacatagcctataaaacatcgttgttacc
cgacttgaaagggacacagcaagtcagactcctctgtcatttggggacaa
taagacgtgagagtaacttttaggatttttcaagtttaagacaagcttaa
gaagaggaccaaaaggggaacgtggctgttatcattctgcaatcagttga
cccgtagaaaggttgttattagttaagtgctatatgactctaaaaatcct
agtgtaaggggtcagattaacactgtaattgaaaacattaccaaaccagg
aatgtgctatgctgagcactcacagagagttatgaggagctgccttaggc
tctttttacagcaagtaaaaatagacaaagagatcaaatatcctaatacc
acaagatgataaacctaacaactgtagattgcactgagtatcagcaagtt
tagattcttggccatctatagattgtcatgcaacatctgcatcagggaca
atacataaggaggtggctgctcaatagcatgacaaacaaccaagaagagc
catagcctctaccactctactctggatgctgagactaagtaactttagtt
tttcaccacctgtcccaggactgctcgcatcatttcttgcatatgtttac
tctagcacttgtctaccttgggtaaaaacccagaggacagtcccacagcc
cacagaagaggctccactccacacactcactctatcatgaccaggatctt
agaatcccaggatcccagaatcccaggagttagtcacacaagaatcttag
agtctcacaggcactgtctcccaggaactgaagacacatccagaatcttc
agggtcacaagatccagaatttaccactgtatccttatagctttatgatc
aaggacaggatgcagctggaactgaccggtgaagaaaatgcaagacatgt
tccatgctggatcctgtgtctaagcctatctaagctctgcgagttgggct
cacagaatcacacctttgcactaatgac
gaattctggtgaaggtgaccacaaacacttagacttgaggagaataatag
atctttgggatgaacatctttcttttttatttatgtttgcaacgtgcata
ctttatgtcaataacaaaggcaccctagtttacaacatctagtctatctg
ggtgttaaactgattgcctgtgtatacactagaattactataacaataca
ttttgtgccattttgttaaataattaaatatttttgtattaatatctatt
tacttattcactttacactctccttactgccccgtgacacccataatctt
tccccaatattcctggccccttcttttctgagggaatatgggacagctat
ctcaggtcatcccttctcctaccaaaactaagtgaccctgtcctggagaa
aggtgctgagggtgctgggaatgaatgacttctgcttggctttcttcttg
ctgcacttggctggctttgaccagtatgtgcagaactttccttgaacttg
gtacttcatcctgatggtccataaaaagcactgttttgattaatgtttga
gagtatatttccatcatacctactcccactagtatactaacaatgacaaa
ggaaattagatatgagacatctattccaggagtttccaattgttctcaga
ccaacagtagaaaagccgacaaagctgacaaaggtgaggtcacacaggga
cctgagagcatactgctgctttcattaagagtgttctagaggattagcat
atctagactcccatagattcgtgtgcactggacaacaaagggctcaacat
actttgcttttgtcactcgctttctcccagtattagaagccccccatttc
agggattgaaggtataataactccccgctggctagaggtatctgaaacat
tgggtagaacagagaactgcttgagaatctggaaagatagaccaagtcat
agcctataagaaatctgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_4547928_4549113
seq2: B6Ng01-099I19.b_47_1224

seq1  GAATTCATTCTTTTCAATAGCTGAGTAGTTCTTCATTGTACAAATGTACC  50
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  GAATTCATTCTTTTCAATAGCTGAGTAGTTCTTCATGGGACAAATGTACC  50

seq1  ATATTTTCTGTATCCATTCCTCTGTTGATGGACATCTTGGTTCTTTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTGTATCCATTCCTCTGTTGATGGACATCTTGGTTCTTTCCAG  100

seq1  CTACTGGCTATCATGATTAAGGCTGCTATGAACCTAATGGAGCTAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCTATCATGATTAAGGCTGCTATGAACCTAATGGAGCTAGTGCA  150

seq1  GATTCAAGGCAATTTATATACTACATAGCCTATAAAACATCGTTGTTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGGCAATTTATATACTACATAGCCTATAAAACATCGTTGTTACC  200

seq1  CGACTTGAAAGGGACACAGCAAGTCAGACTCCTCTGTCATTTGGGGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTGAAAGGGACACAGCAAGTCAGACTCCTCTGTCATTTGGGGACAA  250

seq1  TAAGACGTGAGAGTAACTTTTAGGATTTTTCAAGTTTAAGACAAGCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACGTGAGAGTAACTTTTAGGATTTTTCAAGTTTAAGACAAGCTTAA  300

seq1  GAAGAGGACCAAAAGGGGAACGTGGCTGTTATCATTCTGCAATCAGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGACCAAAAGGGGAACGTGGCTGTTATCATTCTGCAATCAGTTGA  350

seq1  CCCGTAGAAAGGTTGTTATTAGTTAAGTGCTATATGACTCTAAAAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAGAAAGGTTGTTATTAGTTAAGTGCTATATGACTCTAAAAATCCT  400

seq1  AGTGTAAGGGGTCAGATTAACACTGTAATTGAAAACATTACCAAACCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGGGGTCAGATTAACACTGTAATTGAAAACATTACCAAACCAGG  450

seq1  AATGTGCTATGCTGAGCACTCACAGAGAGTTATGAGGAGCTGCCTTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTATGCTGAGCACTCACAGAGAGTTATGAGGAGCTGCCTTAGGC  500

seq1  TCTTTTTACAGCAAGTAAAAATAGACAAAGAGATCAAATATCCTAATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTACAGCAAGTAAAAATAGACAAAGAGATCAAATATCCTAATACC  550

seq1  ACAAGATGATAAACCTAACAACTGTAGATTGCACTGAGTATCAGCAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGATAAACCTAACAACTGTAGATTGCACTGAGTATCAGCAAGTT  600

seq1  TAGATTCTTGGCCATCTATAGATTGTCATGCAACATCTGCATCAGGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTTGGCCATCTATAGATTGTCATGCAACATCTGCATCAGGGACA  650

seq1  ATACATAAGGAGGTGGCTGCTCAATAGCATGACAAACAACCAAGAAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAGGAGGTGGCTGCTCAATAGCATGACAAACAACCAAGAAGAGC  700

seq1  CATAGCCTCTACCACTCTACTCTGGATGCTGAGACTAAGTAACTTTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTCTACCACTCTACTCTGGATGCTGAGACTAAGTAACTTTAGTT  750

seq1  TTTCACCACCTGTCCCAGGACTGCTCGCATCATTTCTTGCATATGTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCACCTGTCCCAGGACTGCTCGCATCATTTCTTGCATATGTTTAC  800

seq1  TCTAGCACTTGTCTACCTTGGGTAAAAACCCAGAGGACAGTCCCACAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCACTTGTCTACCTTGGGTAAAAACCCAGAGGACAGTCCCACAGCC  850

seq1  CACAGAAGAGGCTCCACTCCACACACTCACTCTATCATGACCAGGATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGAGGCTCCACTCCACACACTCACTCTATCATGACCAGGATCTT  900

seq1  AGAATCCCAGGATCCCAGAATCCCAGGAGTTAGTCACACAAGAATCTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCAGGATCCCAGAATCCCAGGAGTTAGTCACACAAGAATCTTAG  950

seq1  AGTCTCACAGGCAACTTGTCTCCCAGGAACTG-AGACACACCCAGAATC-  998
      |||||||||||||   |||||||||||||||| ||||||| |||||||| 
seq2  AGTCTCACAGGCA--CTGTCTCCCAGGAACTGAAGACACATCCAGAATCT  998

seq1  TCAGGGTCACAGGATCCCAGAATTTTACACCTGTATCCTTATAGCTTTAA  1048
      ||||||||||| ||| |||||| |||||  |||||||||||||||||| |
seq2  TCAGGGTCACAAGAT-CCAGAA-TTTACCACTGTATCCTTATAGCTTT-A  1045

seq1  TGATCAAGGACAAGGATGCAGCTGGGACTGAGCGTGTGAAGAAGATGCAG  1098
      ||||||||||| ||||||||||||| ||||| || |||||||| ||||| 
seq2  TGATCAAGGAC-AGGATGCAGCTGGAACTGACCG-GTGAAGAAAATGCAA  1093

seq1  GACATGTTCAATGCTGAGATCCTGTTGTCTAGACATTCTTAAGCTCTGCA  1148
      ||||||||| |||||| ||||||| ||||||  | |   |||||||||| 
seq2  GACATGTTCCATGCTG-GATCCTG-TGTCTAAGCCTATCTAAGCTCTGC-  1140

seq1  GATGTGGGCTCACAGA--TGCATCTTTGCACTCAAATGAC  1186
      ||  ||||||||||||    || |||||||||  ||||||
seq2  GAGTTGGGCTCACAGAATCACACCTTTGCACT--AATGAC  1178

seq1: chr14_4730688_4731665
seq2: B6Ng01-099I19.g_66_1036 (reverse)

seq1  TACTCAGATTTTCTTATTGGGCTATGACTTTGCTCTTGTCTTT-CAGATT  49
      |||||||| ||||||| | ||||||||| ||| || | ||||| ||||||
seq2  TACTCAGA-TTTCTTA-TAGGCTATGAC-TTGGTC-TATCTTTCCAGATT  46

seq1  CTCAAGCAGTTCTCTGATCTTACACATTTTTTGAGATACCTCTAGCCA-C  98
      |||||||||||||||| || ||| || | ||| ||||||||||||||| |
seq2  CTCAAGCAGTTCTCTGTTC-TACCCAATGTTTCAGATACCTCTAGCCAGC  95

seq1  TGGGACTTATTTATACCTTCAAATCCCTCTAAATTGGGGGGCTTCTAATA  148
       |||| ||| |||||||||| |||||  || || ||||||||||||||||
seq2  GGGGAGTTA-TTATACCTTC-AATCC--CTGAAATGGGGGGCTTCTAATA  141

seq1  CTTGGAGAAGCTGAGTGACAAAAGCAAAGTATGTTGAGCCCTTTGGTGTC  198
      || ||||||   ||||||||||||||||||||||||||||||||| ||||
seq2  CTGGGAGAAAGCGAGTGACAAAAGCAAAGTATGTTGAGCCCTTTGTTGTC  191

seq1  CAGTGCACACGAATCTATGGGAGTCTAGATATGCTAATCCTCTAGAACAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTGCACACGAATCTATGGGAGTCTAGATATGCTAATCCTCTAGAACAC  241

seq1  TCTTTAGGAAAGCAGCAGTATGCTCTCAGGTCCCTGTGTGACCTCACCTT  298
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAAAGCAGCAGTATGCTCTCAGGTCCCTGTGTGACCTCACCTT  291

seq1  TGTCAGCTTTGTCGGCTTTTCTACTGCTGGTCTGAGAACAATTGGAAACT  348
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGTCAGCTTTGTCGGCTTTTCTACTGTTGGTCTGAGAACAATTGGAAACT  341

seq1  CCTGGAATAGATGTCTCATATCTAATTTCCTTTGTCATTGTTAGTATACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATAGATGTCTCATATCTAATTTCCTTTGTCATTGTTAGTATACT  391

seq1  AGTGGGAGTAGGTTTGATGGAAATATACTCTCAAACATTAATCAAAACAG  448
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGTAGGTATGATGGAAATATACTCTCAAACATTAATCAAAACAG  441

seq1  TGCTTTTTATGGACCATCAGGATGAAGTACCAAGTTCAAGGAAAGTTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTATGGACCATCAGGATGAAGTACCAAGTTCAAGGAAAGTTCTG  491

seq1  CACATACTGGTCAAAGCCAGCCAAGTGCAGCAAGAAGAAAGCCAAGCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTGGTCAAAGCCAGCCAAGTGCAGCAAGAAGAAAGCCAAGCAGA  541

seq1  AGTCATTCATTCCCAGCACCCTCAGCACCTTTCTCCAGGACAGGGTCACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCATTCCCAGCACCCTCAGCACCTTTCTCCAGGACAGGGTCACT  591

seq1  TAGTTTTGGTAGGAGAAGGGATGACCTGAGATAGCTGTCCCATATTCCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTGGTAGGAGAAGGGATGACCTGAGATAGCTGTCCCATATTCCCT  641

seq1  CAGAAAAGAAGGGGCCAGGAATATTGGGGAAAGATTATGGGTGTCACGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGAAGGGGCCAGGAATATTGGGGAAAGATTATGGGTGTCACGGG  691

seq1  GCAGTAAGGAGAGTGTAAAGTGAATAAGTAAATAGATATTAATACAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAGGAGAGTGTAAAGTGAATAAGTAAATAGATATTAATACAAAAA  741

seq1  TATTTAATTATTTAACAAAATGGCACAAAATGTATTGTTATAGTAATTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTATTTAACAAAATGGCACAAAATGTATTGTTATAGTAATTCT  791

seq1  AGTGTATACACAGGCAATCAGTTTAACACCCAGATAGACTAGATGTTGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATACACAGGCAATCAGTTTAACACCCAGATAGACTAGATGTTGTA  841

seq1  AACTAGGGTGCCTTTGTTATTGACATAAAGTATGCACGTTGCAAACATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGGTGCCTTTGTTATTGACATAAAGTATGCACGTTGCAAACATAA  891

seq1  ATAAAAAAGAAAGATGTTCATCCCAAAGATCTATTATTCTCCTCAAGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGAAAGATGTTCATCCCAAAGATCTATTATTCTCCTCAAGTCT  941

seq1  AAGTGTTTGTGGTCACCTTCACCAGAATTC  978
      ||||||||||||||||||||||||||||||
seq2  AAGTGTTTGTGGTCACCTTCACCAGAATTC  971