BAC Information

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BAC

Clone NameB6Ng01-100A24
Chromosome14 (Build37)
Map Location 38,184,372 - 38,185,442
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872, Nrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100A24.bB6Ng01-100A24.g
ACCDH909675DH909676
length1,2191,079
definitionDH909675|Mus musculus domesticus DNA, BAC clone: B6Ng01-100A24, 5' end.DH909676|Mus musculus domesticus DNA, BAC clone: B6Ng01-100A24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacagaaagcacatatattctccaatgtcttaggatgaactggt
tttagtgaaaaagaaaaattctaagttatttcccttttaattgaggatac
cacaaaagactaaataggcagtcatctgtgaggagccgccctcacatttg
ccattataagatggcactgacagctgtgttctaagtggtaaacatagtct
gcacacatgcaggggcagttttcccaccatgtgttctgcctttcccgtga
tgacaactgggccgatgggctgcagccaatcagggagtaatacgtcctag
gtggaggataattctccttaaaaagggatgggatttcgccattctcgctc
tcttgcttcttacactcttgctcctgaagatgtaagcaataaagttttgc
cgcagaagattctggtttgctgtgttcttcctggccgggcgtgagaacgc
tattaagaattggtgccgaaacccgggacgagaaattccgggacgagaaa
aaatccgggacgaaaaaatacaagaaaactcgggaccggcgcaaggaaga
tccctcattccagaaccagaactgcgggtcgcggtaataaaggttcccgt
aaagcagactgttaagaaggattcaactgcatgaattcagaacttttcag
ctggggaacggcggtaacccgtaagtatagctttacgaggtacgcctggc
cttgaactttctaaggaaattcaagacagtctatcagaagtaaagtggaa
aatagctttataaggtatgtttggccttgaactttctctagtgttagaag
cccttttgttccttttcacatgttatcaagtggttaaggcagggcgaatt
ctagacgaaattaaagtcaatctatcagaagtaaagcggggagagagagt
aggagcaaagaggaaacatggtgcacaaaataagtatacaaggcctttcc
aagagtttgaacctgaggaaaagttaaggtcaggtagaatacctggggag
agattggaggaagagagaaaacaagaatgatcatcacggaggtttctagg
agaaggagctatacccatcactagatgagtttaaggagctagttcttagt
agctctgaatcagaataaaaatttagctctctggaagaaacagtactggg
agtaggaaggccagctcatattgtaaggttaaagggttacctagcctcag
aataaatgtgccgatgcta
gaattctggcctgagttatgggtataactcaatattagttcacttgctca
aaatgtgtgaggttcggtgcttaaacaccaaggactgaaaaaataaaaag
taaggctaactaaaatgacctaaaggaaagtgtggtagtttgaatatgct
tggattatggaaagtggtactgttattagtaagtgtggctttattggagg
aagtgtgtcagggtgggtgtgtgctttgatgggctatgctcaagctccat
ccagtgtagaagagtctctcttgactgtcttctgatcaagatgtagaact
ctaggttcctccagcactaggtccatctgcacttcttttatcttagccat
gatgataatggattaaacttctgaaactataaaccccaattaaatatttt
ccttcattagagttgcctttgtcatggtgtctcttcacagcaatggaaac
cctaaggcagaaaccaaggtttcccactttatttcaagttccaaaacact
ggtgttcatgcacagtgatgaggcatatattcatgctctagcacagaaca
ctgtgtgaagctatagatattatcatatgcaaaactgtgacaaaggagct
aaggtgaacttttagaaatgcagttcattgatgacttcttaaagttgttt
tctatatctgtatgccaggtaatgtgtttcatcatggtatcttcatttca
catatgccatgactttgatctcatccattgtctcccccatgacctccccc
atcctccctctttcccattctagctgctaccttctttctgccaaatcccc
attttccttattggtattctaatacagcctctatttcctacttcattatg
atttgttattttccttctcatgatttctcattacagtatcatggcctact
tacacataccaaatgtacacctatatatacccatacatgcaaattaaatc
aagaatctgcatgtaggagacattcagtatttttcattctatgtgggctt
tatttttagggacatatgaatttccatttccaaccacacccttgccaaat
gtctaattttttcctgccctggctgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38184372_38185442
seq2: B6Ng01-100A24.g_67_1145

seq1  GAATTCTGGCCTGAGTTATGGGTATAACTCAATATTAGTTCACTTGCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCTGAGTTATGGGTATAACTCAATATTAGTTCACTTGCTCA  50

seq1  AAATGTGTGAGGTTCGGTGCTTAAACACCAAGGACTGAAAAAATAAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTGAGGTTCGGTGCTTAAACACCAAGGACTGAAAAAATAAAAAG  100

seq1  TAAGGCTAACTAAAATGACCTAAAGGAAAGTGTGGTAGTTTGAATATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTAACTAAAATGACCTAAAGGAAAGTGTGGTAGTTTGAATATGCT  150

seq1  TGGATTATGGAAAGTGGTACTGTTATTAGTAAGTGTGGCTTTATTGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATGGAAAGTGGTACTGTTATTAGTAAGTGTGGCTTTATTGGAGG  200

seq1  AAGTGTGTCAGGGTGGGTGTGTGCTTTGATGGGCTATGCTCAAGCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTCAGGGTGGGTGTGTGCTTTGATGGGCTATGCTCAAGCTCCAT  250

seq1  CCAGTGTAGAAGAGTCTCTCTTGACTGTCTTCTGATCAAGATGTAGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTAGAAGAGTCTCTCTTGACTGTCTTCTGATCAAGATGTAGAACT  300

seq1  CTAGGTTCCTCCAGCACTAGGTCCATCTGCACTTCTTTTATCTTAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTCCTCCAGCACTAGGTCCATCTGCACTTCTTTTATCTTAGCCAT  350

seq1  GATGATAATGGATTAAACTTCTGAAACTATAAACCCCAATTAAATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAATGGATTAAACTTCTGAAACTATAAACCCCAATTAAATATTTT  400

seq1  CCTTCATTAGAGTTGCCTTTGTCATGGTGTCTCTTCACAGCAATGGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTAGAGTTGCCTTTGTCATGGTGTCTCTTCACAGCAATGGAAAC  450

seq1  CCTAAGGCAGAAACCAAGGTTTCCCACTTTATTTCAAGTTCCAAAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGCAGAAACCAAGGTTTCCCACTTTATTTCAAGTTCCAAAACACT  500

seq1  GGTGTTCATGCACAGTGATGAGGCATATATTCATGCTCTAGCACAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCATGCACAGTGATGAGGCATATATTCATGCTCTAGCACAGAACA  550

seq1  CTGTGTGAAGCTATAGATATTATCATATGCAAAACTGTGACAAAGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAAGCTATAGATATTATCATATGCAAAACTGTGACAAAGGAGCT  600

seq1  AAGGTGAACTTTTAGAAATGCAGTTCATTGATGACTTCTTAAAGTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAACTTTTAGAAATGCAGTTCATTGATGACTTCTTAAAGTTGTTT  650

seq1  TCTATATCTGTATGCCAGGTAATGTGTTTCATCATGGTATCTTCA-TTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTATATCTGTATGCCAGGTAATGTGTTTCATCATGGTATCTTCATTTCA  700

seq1  CATATGCCATGACTTTGATCTCATCCATTGTCTCCCCCATGACCTCCCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCATGACTTTGATCTCATCCATTGTCTCCCCCATGACCTCCCCC  750

seq1  ATCCTCCCTCTTTCCCATTCTAGCTGCTACCTTCTTTCTGCC-AATCCCC  798
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCCTCCCTCTTTCCCATTCTAGCTGCTACCTTCTTTCTGCCAAATCCCC  800

seq1  ATTTCCCTTATTGGTATTCTAATACAGCCTCTATTTCCTACTTCATTATG  848
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTATTGGTATTCTAATACAGCCTCTATTTCCTACTTCATTATG  850

seq1  A-TTGTTATTTTCCTTCTCATGA-TTCTCATTACAGTATCATGGCCTACA  896
      | ||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  ATTTGTTATTTTCCTTCTCATGATTTCTCATTACAGTATCATGGCCTACT  900

seq1  TACACATA-CAAATGTACACCTATATATACCCATACATGCAAATTTAAAT  945
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  TACACATACCAAATGTACACCTATATATACCCATACATGCAAA-TTAAAT  949

seq1  CAAGAATCTGCATGTAGGAGACATTCAGTATTTTTCATTCTATGTTGGGC  995
      ||||||||||||||||||||||||||||||||||||||||||||| ||  
seq2  CAAGAATCTGCATGTAGGAGACATTCAGTATTTTTCATTCTATGTGGGCT  999

seq1  TTATTTTTAGTGACATAATGATTTCCATTTCCAACTACACCCT--GCAAA  1043
      |||||||||| ||||||   ||||||||||||||| |||||||   ||||
seq2  TTATTTTTAGGGACATATGAATTTCCATTTCCAACCACACCCTTGCCAAA  1049

seq1  TGTCT-ATTTTTTCCTG-CTTGGCTGCATA  1071
      ||||| ||||||||||| | |||||||| |
seq2  TGTCTAATTTTTTCCTGCCCTGGCTGCACA  1079