BAC Information

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BAC

Clone NameB6Ng01-100C19
ChromosomeX (Build37)14 (Build37)
Map Location 92,128,569 - 92,128,73480,421,625 - 80,422,778
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik, EG668148, Maged1, LOC668150, EG385499, EG668156, Gspt2, LOC385500, Zxdb, LOC631331, EG631319, Zxda
Downstream geneGm371, 9630042H07Rik, Arhgef9, LOC619688, LOC100042189, 2810002O09Rik, Asb12, LOC668202, AK129302, A130028J20Rik, 1700010D01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C19.bB6Ng01-100C19.g
ACCDH909748DH909749
length9471,143
definitionDH909748|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C19, 5' end.DH909749|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,128,569 - 92,128,734)(80,421,625 - 80,422,778)
sequence
gaattctttgtacctcatttttaatggggttatttgttttcttgatgtcc
agggctttttgtttgtttgtttgattgattgattttggtttggttttttc
ttttttttgagtcttttatatattttgaatattagacctctatcaaatgt
gcagttgacaaaatcctttttctgtactgtagactgccactttgtacaaa
taactatttcttttgctatgtaccaacttttcactttcaggaggtccatt
tattgttgatcttattgccagctctcatagagagctagtgagttcaaagc
tattctcctcttcctcttctattaggtttagtgtatcaaattgtatatta
atctctttgattcacttgaggttgagttttgcgcaggtgataagtgtgga
tctgtttggattcctctgtgtgctcccaccaagtctggccagcaccattt
attcaagctgctttttcactgtctgtatttcttttttttttttttaatta
aaaaaatatcaggtgtttgtaggtgtctggatttatgtatgagtcttcaa
tttgattcaattgatcaactttaaggtattcgccaaaactatttgttttg
ttttgttttgttttgttttgttttgttttgttttattagtatagttttgt
actataatttgaagtcagggatggtgatgcttccaacagttcttgtactg
ttaaagactgttttggctatcctcatttttttttttgcatgtccatatga
agctgaaaattgcctttcaagatctgtgaagcattgtgttgaaattttga
cagagttgcattcaattggtagacggcttttgatagaatgtccctttttt
actataataatcttatgggcattggagttcttttcatcttctgatactta
ttcaatttcttttcttcagtgcctaaatctttatcatgcaagtcttt
gaattcagagcatcaattaccatccctttgaccaaaaactttatgtctat
aatgatggttatcttctgaactatgatcttgtcttcttacagacgcccag
gcaacctgtctaagtgttagggtgaaggaggaatgaaatgtttgatggca
attttcttctctacatatttagacagcttcagggaagtctaggagtgtgt
ttctttagtcatgatgttagtagagatagttttatcacaatagagaccta
ggctatttgtctcagtttgatttctcttgggaattatcatcctctttgga
tagatttaacaaatgaaataaggtctttgcaagtaaagttctcagcggct
aggggtgctatgagcctaataaagtttctagtgaggtaaagtctagaaga
taaagaacttaaggggtacttagtatgaattctgggaattctttctctta
gaaaatttgcatggtgacccaccacatagaaccattgagttgtgcatgac
agaaaggacgctggggcttaattaggtagatcaacatcaggaggtggaca
tgagagcaaatatttagctttgttttcctcctggctcctgaaacctgtgt
atagcagataggtaaatttggcatcttaaatgatatctctcagacatttt
gagttttctgcagaatggacctactttatgttaagttgcacagtgcaaat
atgtcctggaagggttttcagatgatatacttgggttttcttttctctca
ttcttcacctacacaattcagtagacccctttacctcataattcaggtcc
cagggcaaccataagattagaaacagacttaacaaccagtcacatttctt
tactgcttatgtgttttcttagacattaactagttttttttttatgggtc
agatataaaatcaatgaactttctcttgtattttcctgcaattttggttt
atgtaattacaagactgtaaaaaaataccagttgttagtgatgttgctgg
tgcatttctagctatataataaagatcgtgaaataaattgtaccagttgt
ttcatatggttctctcttaatctggaaattgcagagaaaggtgaagtttt
ttaatgtaactttataataaaatatgtaagaaatcactttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_92128569_92128734
seq2: B6Ng01-100C19.b_100_490

seq1  TTTTTGTTTGTTTGTTTGATTGATTGA------------------TTTTT  32
      |||||||||||||||||||||||||||                  |||||
seq2  TTTTTGTTTGTTTGTTTGATTGATTGATTTTGGTTTGGTTTTTTCTTTTT  50

seq1  TTCGAG------AAAGTGTTT-----------CTC-------TGTG----  54
      || |||      | |   |||           |||       ||||    
seq2  TTTGAGTCTTTTATATATTTTGAATATTAGACCTCTATCAAATGTGCAGT  100

seq1  -----TAACCC--TGGCTGTCCTGGA-ACT--CACTCTGTA-----GACC  89
            || ||  |  |||| ||| | |||  |||| ||||      || 
seq2  TGACAAAATCCTTTTTCTGTACTGTAGACTGCCACTTTGTACAAATAACT  150

seq1  A-------GGCTGGCTTCAAAC---------TCAGAA-------------  110
      |        |||   | | |||         |||| |             
seq2  ATTTCTTTTGCTATGTACCAACTTTTCACTTTCAGGAGGTCCATTTATTG  200

seq1  ---AT----TTGCCTGCCTCTGCCCACCAAGTGCTGGT--ATTAAAGGTG  151
         ||    ||||| | ||||   ||   || ||| ||   || || |  
seq2  TTGATCTTATTGCCAG-CTCT---CATAGAGAGCTAGTGAGTTCAAAGCT  246

seq1  AGTGCCACCAGCACC-----------------------------------  166
      | |  | ||    ||                                   
seq2  ATT--CTCCTCTTCCTCTTCTATTAGGTTTAGTGTATCAAATTGTATATT  294

seq1  --------------------------------------------------  166
                                                        
seq2  AATCTCTTTGATTCACTTGAGGTTGAGTTTTGCGCAGGTGATAAGTGTGG  344

seq1  -----------------------------------------------  166
                                                     
seq2  ATCTGTTTGGATTCCTCTGTGTGCTCCCACCAAGTCTGGCCAGCACC  391

seq1: chr14_80421625_80422778
seq2: B6Ng01-100C19.g_68_1210

seq1  GAATTCAGAGCATCAATTACCATCCCTTTGACCAAAAACTTTATGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCATCAATTACCATCCCTTTGACCAAAAACTTTATGTCTAT  50

seq1  AATGATGGTTATCTTCTGAACTATGATCTTGTCTTCTTACAGACGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGTTATCTTCTGAACTATGATCTTGTCTTCTTACAGACGCCCAG  100

seq1  GCAACCTGTCTAAGTGTTAGGGTGAAGGAGGAATGAAATGTTTGATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGTCTAAGTGTTAGGGTGAAGGAGGAATGAAATGTTTGATGGCA  150

seq1  ATTTTCTTCTCTACATATTTAGACAGCTTCAGGGAAGTCTAGGAGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCTCTACATATTTAGACAGCTTCAGGGAAGTCTAGGAGTGTGT  200

seq1  TTCTTTAGTCATGATGTTAGTAGAGATAGTTTTATCACAATAGAGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGTCATGATGTTAGTAGAGATAGTTTTATCACAATAGAGACCTA  250

seq1  GGCTATTTGTCTCAGTTTGATTTCTCTTGGGAATTATCATCCTCTTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTTGTCTCAGTTTGATTTCTCTTGGGAATTATCATCCTCTTTGGA  300

seq1  TAGATTTAACAAATGAAATAAGGTCTTTGCAAGTAAAGTTCTCAGCGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTAACAAATGAAATAAGGTCTTTGCAAGTAAAGTTCTCAGCGGCT  350

seq1  AGGGGTGCTATGAGCCTAATAAAGTTTCTAGTGAGGTAAAGTCTAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGCTATGAGCCTAATAAAGTTTCTAGTGAGGTAAAGTCTAGAAGA  400

seq1  TAAAGAACTTAAGGGGTACTTAGTATGAATTCTGGGAATTCTTTCTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACTTAAGGGGTACTTAGTATGAATTCTGGGAATTCTTTCTCTTA  450

seq1  GAAAATTTGCATGGTGACCCACCACATAGAACCATTGAGTTGTGCATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTGCATGGTGACCCACCACATAGAACCATTGAGTTGTGCATGAC  500

seq1  AGAAAGGACGCTGGGGCTTAATTAGGTAGATCAACATCAGGAGGTGGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGACGCTGGGGCTTAATTAGGTAGATCAACATCAGGAGGTGGACA  550

seq1  TGAGAGCAAATATTTAGCTTTGTTTTCCTCCTGGCTCCTGAAACCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAAATATTTAGCTTTGTTTTCCTCCTGGCTCCTGAAACCTGTGT  600

seq1  ATAGCAGATAGGTAAATTTGGCATCTTAAATGATATCTCTCAGACATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGATAGGTAAATTTGGCATCTTAAATGATATCTCTCAGACATTTT  650

seq1  GAGTTTTCTGCAGAATGGACCTACTTTATGTTAAGTTGCACAGTGCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCTGCAGAATGGACCTACTTTATGTTAAGTTGCACAGTGCAAAT  700

seq1  ATGTCCTGGAAGGGTTTTCAGATGATATACTTGGGTTTTCTTTTCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGGAAGGGTTTTCAGATGATATACTTGGGTTTTCTTTTCTCTCA  750

seq1  TTCTTCACCTACACAATTCAGTAGACCCCTTTACCTCATAATTCAGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACCTACACAATTCAGTAGACCCCTTTACCTCATAATTCAGGTCC  800

seq1  CAGGGCAACCATAAGATTAGAAACAGACTTAACAACCAGTCACATTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAACCATAAGATTAGAAACAGACTTAACAACCAGTCACATTTCTT  850

seq1  TACTGCTTATGTGTTTTTCTTAGACATTAACTAGTTTTTTTTTTTATGGG  900
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TACTGCTTATGTG-TTTTCTTAGACATTAACTAG-TTTTTTTTTTATGGG  898

seq1  TCAGATATAAAATCAATGAACTTTCTCTTGTATTTTCCTGCAATTTTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATATAAAATCAATGAACTTTCTCTTGTATTTTCCTGCAATTTTGGT  948

seq1  TTATGTAATTACAAGACTGTAAAAAAATACCAGTTGTTAGTGATGTTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAATTACAAGACTGTAAAAAAATACCAGTTGTTAGTGATGTTGCT  998

seq1  GGTTGCATTTCTAGCTATATAATAAAGATCGTGAAATAAATTGTACCAGT  1050
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TGCATTTCTAGCTATATAATAAAGATCGTGAAATAAATTGTACCAGT  1047

seq1  TGTTTCATATAGTTTCTCTCTTTAATCCTGGAATTTGCA-AGAAAGTGAA  1099
      |||||||||| | ||||||| ||||| |||||| ||||| ||||||   |
seq2  TGTTTCATAT-GGTTCTCTC-TTAAT-CTGGAAATTGCAGAGAAAGGTGA  1094

seq1  AATTTTTTATATGTAAAACTTTATATATAAAAATAATGTAGGAAATCACC  1149
      | ||||||| ||||  ||||||||| ||||||   ||||| |||||||| 
seq2  AGTTTTTTA-ATGT--AACTTTATA-ATAAAA--TATGTAAGAAATCACT  1138

seq1  TTGTA  1154
      |||||
seq2  TTGTA  1143