BAC Information

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BAC

Clone NameB6Ng01-100K23
Chromosome2 (Build37)14 (Build37)
Map Location 129,056,740 - 129,057,294118,453,272 - 118,454,330
singlet/doubletsingletsinglet
Overlap geneA730036I17Rik
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1
Downstream geneLOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100K23.bB6Ng01-100K23.g
ACCDH910111DH910112
length5721,057
definitionDH910111|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K23, 5' end.DH910112|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,056,740 - 129,057,294)(118,453,272 - 118,454,330)
sequence
atccccctctccccagctttgtagagcctcatatgtgagctaaagcttat
atatcaggagtgctgtggttcccactcctggatgtgtgtgtgtgtgtgtg
tacatatacatgtatatatacatataaatatatatgcatatacatatata
tacatatatatatatacctatacacacacacacgagcgcgtgtatatgtg
tgtgtgtgtacatatacatgtatatatacatataaatatatatacatata
catacacacacatatatatatgtatatatatacctatatacacacacaag
agcgcgtgtatatgtgtgtgtacatatacatgtatatatacatataaata
tatatacatatatatacatatacatatatatacctatacaaatacacaca
cacgagcgcgtgtatatatgtgtgtgtgtgtgtgtacatatacatgtata
tatacatatatatacatatacatatatatacatatacacacacatataga
catatatatatatacacacacacacacacgagcacgtgtatatgtgtgtg
tgtgtgtgtgtgtgtgtatgta
gaattcctgagagacgatgaatgtagtaacacagcttattgcgaagattg
ggaccttggggtcagggagatacagtccttccaatgccctgctatccgag
gtcccaggctccctctcctctcatgtaacattgggataataaccagcgac
ttgataggactaagaggaaaacaagccgtgcactgtgattggaaggtgtc
ctggttgaggacaccaaagtgaatggcaaaggacggctcctctcagcagg
tgacactccagtgacaggaagccaggaggggatatttcaggcagaagaaa
cagcagtacaatggctgagagttcccatgactagatctgtctgggtagca
gtgaccatagtactctgcccaacaaagacagacagaaagacaggcagcag
aagttctgacatgaccttctagtccagctcctcccaaactctatggcaca
gaagttttggaaaacagttttaaggccaacgtgagatctaaatgcgcatg
gtgtcagtgcgaatgaccctccaggctggcacctgaccgatcatgtgcaa
gagtgtatgtcaatggccaagcttctaaatgctatatcccagtttctgtc
tttactgtatccatcctaatgtaggtcagaagcacacaggctgggatctg
ctgaccaccctgggtagcacatggaacaatgtttgtcatcactctaagtg
cttcagaaatcattgccgggaaaggaagaaagagaaaccaaagattcaag
gaccatggtggtgttttagtccttagagcagaggatcaatgtgacaagac
agcaaaattctgctctgagggtctaagcccttctgggaggaagttggcta
tgagtctgagacttgcaggtgagagccggcccagggaaggaatcctgggg
tgagtgagaacttttgtgtaaagcctcagatgatcctggttgcatggcag
gtgctacacgaaaaggaaatgggtcaattctgatgtgagaaattgttccc
tcaatttcagttctagaaaatctgatgatggcatcttccaactcactgct
gctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_129056740_129057294
seq2: B6Ng01-100K23.b_444_622 (reverse)

seq1  TACATACACACACGCACACACACACACACACACACACACACACACACACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACGAGAGAAAGGACTGCAACACACATGCCTATCTCACCTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGATTGCCATACTCTGTGTAATGCCTGGGACCTATTCTTAACTGTAGAGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGTCCATTCTGTTCTCACACAGGCAGAGTTCTGCCTTTTGCTCATTGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CATAAAATAGTGAATGGCTATATATATGTGTGTGTATATATATGTATACA  250
                                      |  ||| | |   | |||
seq2  --------------------------------TACATACACACACACACA  18

seq1  TATATATATTTGTATATATGTGTGTGTATATGTATATATATGTGTGTGTA  300
       | | | |    |||| | |||   |            | ||||||||| 
seq2  CACACACACACATATACACGTGCTCG------------TGTGTGTGTGTG  56

seq1  TGTATACACACATATGCATACGTATATATGTGTGTATATATATGTATACA  350
      |||||      ||||  ||| || ||||||||||| ||||| | |||| |
seq2  TGTAT------ATATATATATGTCTATATGTGTGTGTATATGTATATATA  100

seq1  TATATATTTGTATATATGTGTGTATATATGTATAGATATGTGTGTATACA  400
      | ||||| | ||||||||| | |||| |||||||        |||| |||
seq2  TGTATATGTATATATATGTATATATACATGTATA--------TGTACACA  142

seq1  CACACACACACACATATA-----GGTCTTTTACAATTTCATAGATACCTA  445
      |||||||||||| |||||     | || | |     |             
seq2  CACACACACACATATATACACGCGCTCGTGTGTGTGT-------------  179

seq1  TAGTAGTTATATATTTTTTATTATAGTCCCTTGTTATCTTTGCTTATTGC  495
                                                        
seq2  --------------------------------------------------  179

seq1  CTTTCCTTTCCCACCAAACTCTTTCTTTGTTTCAGTGACCTCCCTCCTAC  545
                                                        
seq2  --------------------------------------------------  179

seq1  GTGTGTGTGT  555
                
seq2  ----------  179

seq1: chr14_118453272_118454330
seq2: B6Ng01-100K23.g_71_1127 (reverse)

seq1  TCTGAGCAGCAGTGAAGTTTGGAAGATGCCATCATCAGA-TTTCTAGGAA  49
      |||||||||||||||   ||||||||||||||||||||| |||||||  |
seq2  TCTGAGCAGCAGTGA--GTTGGAAGATGCCATCATCAGATTTTCTAG--A  46

seq1  CCTGAAATTGAGGGA--CATTTCTCACATCAGAA-TGACCCATTTCCTTT  96
       ||||||||||||||   |||||||||||||||| |||||||||||||||
seq2  ACTGAAATTGAGGGAACAATTTCTCACATCAGAATTGACCCATTTCCTTT  96

seq1  TCGTTGTAGCACCTGCCATGCAACCCAGGTCATCTGAGGCTTTACACAAA  146
      ||| |||||||||||||||||||||  | |||||||||||||||||||||
seq2  TCG-TGTAGCACCTGCCATGCAACCAGGATCATCTGAGGCTTTACACAAA  145

seq1  AGTTCTCACCTCACCCCAGGATTCCTTCCCTGGGCCGGCTCTCACCTGCA  196
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCA-CTCACCCCAGGATTCCTTCCCTGGGCCGGCTCTCACCTGCA  194

seq1  AGTCTCAGACTCATAGCCAACTTCCTCCCAGAAGGGCTTAGACCCTTCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTCTCAGACTCATAGCCAACTTCCTCCCAGAAGGGCTTAGACCC-TCAG  243

seq1  AGCAGAATTTTGCTGTCTTGTCACATTGATCCTCTGCTCTAAGGACT-AA  295
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCAGAATTTTGCTGTCTTGTCACATTGATCCTCTGCTCTAAGGACTAAA  293

seq1  ACACCACCATGGTCCTTGAATCTTTGGTTTCTCTTTCTTCCTTTCCCGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCATGGTCCTTGAATCTTTGGTTTCTCTTTCTTCCTTTCCCGGC  343

seq1  AATGATTTCTGAAGCACTTAGAGTGATGACAAACATTGTTCCATGTGCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTCTGAAGCACTTAGAGTGATGACAAACATTGTTCCATGTGCTA  393

seq1  CCCAGGGTGGTCAGCAGATCCCAGCCTGTGTGCTTCTGACCTACATTAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTGGTCAGCAGATCCCAGCCTGTGTGCTTCTGACCTACATTAGG  443

seq1  ATGGATACAGTAAAGACAGAAACTGGGATATAGCATTTAGAAGCTTGGCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACAGTAAAGACAGAAACTGGGATATAGCATTTAGAAGCTTGGCC  493

seq1  ATTGACATACACTCTTGCACATGATCGGTCAGGTGCCAGCCTGGAGGGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATACACTCTTGCACATGATCGGTCAGGTGCCAGCCTGGAGGGTC  543

seq1  ATTCGCACTGACACCATGCGCATTTAGATCTCACGTTGGCCTTAAAACTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCACTGACACCATGCGCATTTAGATCTCACGTTGGCCTTAAAACTG  593

seq1  TTTTCCAAAACTTCTGTGCCATAGAGTTTGGGAGGAGCTGGACTAGAAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAAACTTCTGTGCCATAGAGTTTGGGAGGAGCTGGACTAGAAGG  643

seq1  TCATGTCAGAACTTCTGCTGCCTGTCTTTCTGTCTGTCTTTGTTGGGCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCAGAACTTCTGCTGCCTGTCTTTCTGTCTGTCTTTGTTGGGCAG  693

seq1  AGTACTATGGTCACTGCTACCCAGACAGATCTAGTCATGGGAACTCTCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTATGGTCACTGCTACCCAGACAGATCTAGTCATGGGAACTCTCAG  743

seq1  CCATTGTACTGCTGTTTCTTCTGCCTGAAATATCCCCTCCTGGCTTCCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTACTGCTGTTTCTTCTGCCTGAAATATCCCCTCCTGGCTTCCTG  793

seq1  TCACTGGAGTGTCACCTGCTGAGAGGAGCCGTCCTTTGCCATTCACTTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGAGTGTCACCTGCTGAGAGGAGCCGTCCTTTGCCATTCACTTTG  843

seq1  GTGTCCTCAACCAGGACACCTTCCAATCACAGTGCACGGCTTGTTTTCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCAACCAGGACACCTTCCAATCACAGTGCACGGCTTGTTTTCCT  893

seq1  CTTAGTCCTATCAAGTCGCTGGTTATTATCCCAATGTTACATGAGAGGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCCTATCAAGTCGCTGGTTATTATCCCAATGTTACATGAGAGGAG  943

seq1  AGGGAGCCTGGGACCTCGGATAGCAGGGCATTGGAAGGACTGTATCTCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCTGGGACCTCGGATAGCAGGGCATTGGAAGGACTGTATCTCCC  993

seq1  TGACCCCAAGGTCCCAATCTTCGCAATAAGCTGTGTTACTACATTCATCG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAAGGTCCCAATCTTCGCAATAAGCTGTGTTACTACATTCATCG  1043

seq1  TCTCTCAGGAATTC  1059
      ||||||||||||||
seq2  TCTCTCAGGAATTC  1057