BAC Information

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BAC

Clone NameB6Ng01-102E05
Chromosome14 (Build37)
Map Location 112,427,824 - 112,548,015
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043494, Slitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102E05.bB6Ng01-102E05.g
ACCDH911205DH911206
length1,1941,146
definitionDH911205|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E05, 5' end.DH911206|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,546,793 - 112,548,015)(112,427,824 - 112,428,964)
sequence
gaattctcattctgagctttatttagatgagtgtataaattccaatgcat
tcacaagacaaggaaaataaaatggatgatgggcatagcgagagggagct
ctggtgaaggacaggagtgctgtgtatgaacagtgaaatggaaaaatgga
aggggcacttaactcgggtgaagggagggatggccaatgacagaatatgg
gaagatcaataacactaagactgtttacaaacgttcatacatatttcttt
aaacttaataataaactaaacatttcctcaccagaagtaatttcttagca
aatgtagtttttggtaatgactacaaaaacatataaaccacatgcattct
atacagtcaactgcacatataacagcttacagtttatacagatcatgatt
aaatttattgtaaaattcaaccaaagtttgcaaatctctttaagcttctc
cccatttggtctccagcatgtattgtgaaatttaggcccctcatttgatt
ttgtagaaacatatttattcgcagtacacaaaagtaaacattggcatggg
gtaaggagagaacccaatggacaaatcatttgcaaagcaagtgcatggac
aagagacacaaaaatggcaagcagactgcagtagtgttcatctatcattt
cagcttgcttatggtgatatagacaatagaaacagtagaacccacagaag
ttcatggtacaggaaccaaggttgacctctggtctacacattttcactgt
ggcaaaaatccatgccctcctctacacaaatacgtcatacagtacattca
aattaaaatttttaccaatgttttatgaacctgagccatgtctgctcgtg
ttcacaccctttatctttcttagaactcggaaatactcacctatttgtgg
aagttctgtattcctgtcagtgaagagtgtacaagcatacgtaaagcctc
cagaagaaatcaaatagtatataccacgttgccattattttcacatttga
ccatgaaatttacacatacacagaaaagcacaccagaaatatattccgaa
caactaacaaaaagataaaaatcccttctaatagaaggtgggaataaatc
cagttctttttcttttgtccgaattgttgttgttgcatattctcctgtgg
ttggttgaatttgaaaagttctctgggagcctgctctggaaatc
gaattcaatgtgccaggaactcttcgaggtgctgaaaatattaatgtgaa
atgcagaaaacacatttatctccaggaggttacagcctagagaaaaagaa
aaattagtactcctatgtagagtagagaaggatacacatcctatttggga
aaaaaataacctttacacgaaacaagagagctaaagtaatcatgaacttg
gagttcaaagccaaagaagacaagttaccatgtaggcttacttcatttct
aaaatgtgaaatgaactgaggaatagatttaatgtgggcactgaaaagag
agggatgacctggagcatagccaaagggtcattacttcacgttgtcattg
cgggaacattttaacttatccatagggcacaggagctctaaaaaggctag
ctagcagtccgaggcttccattttaatacatactttggttcatgcaatct
gagtagacaaaaagcataaaatataataggaaaactaacaaaatatgttt
agaagtaatgatatgtagtgatttattgatatgcacaatgattgttagca
tctctcataaggaaaaacaatctatatttaagcacttatatcttatagac
gaagaaatacatgcatttcttgagaaattagtaattggcacaaaaacaag
cacaaaggcctcctgatcagaactacaattatttcactataggactccta
tagaatttcagctcttttacacaatctgattgcatccggggggggggggg
caaagaatgaatgcaaatattttttttaaaatcattatttgatttgtaat
tttattgccttcaccaatatgcttcagagaatttgacatagagatttgaa
agtggtgagttctgaacataaaaatagaatgtctatgttttattcatatt
tggagcagcagcttgaaggaagggaaactgcagctgtacttttccatgta
ctagcaactggtatggagtcaagcaaaatttctgaaactcataaggtgcc
agtaaggagcatgcaccgtgacaattggaagaaaagaaatcataatgaat
gtgaatctacctgttccactcccagccatgctatataagaataataaatg
gagggtcgttacaatctaataatgcagatttacttgaagactggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112546793_112548015
seq2: B6Ng01-102E05.b_39_1232 (reverse)

seq1  GATTTCCAAGACAGCCAGGGCTCCACAGAGAAACCCTATCTCAAATATCA  50
      ||||||||   ||     |||||| |||||||   || | |||||| || 
seq2  GATTTCCAGAGCA-----GGCTCC-CAGAGAA---CT-TTTCAAAT-TC-  38

seq1  AACCAACACACAAAGGAGAAAATAGCAAAACAACAACAAATCGGACAAAA  100
      |||||||   || ||||||| || ||  ||||||||||| ||||||||||
seq2  AACCAAC---CACAGGAGAATAT-GC--AACAACAACAATTCGGACAAAA  82

seq1  GAAAAAGAACCTGAGAATTTTAATTCCCACCTTCTATTTAGAAGTGAATT  150
      ||||||||||  ||     || |||||||||||||| ||||||| | |||
seq2  GAAAAAGAACTGGA-----TTTATTCCCACCTTCTA-TTAGAAG-GGATT  125

seq1  TTTATCTTTTTGTTAGTTGTTTTGGATATAATTTCTGTGTGTGCTTTTCT  200
      |||||||||||||||||||||  | |||| ||||||| ||||||||||||
seq2  TTTATCTTTTTGTTAGTTGTTCGGAATAT-ATTTCTG-GTGTGCTTTTCT  173

seq1  GTGTATGTGTACATTTTCATGGTCAAATGTGAAAATAATGGCAACGTGGT  250
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTA-AATTTCATGGTCAAATGTGAAAATAATGGCAACGTGGT  222

seq1  ATATAACTATTTGATTTCTTCTGGAGGCTTTACGTATGCTTGTACACTCT  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAT-ACTATTTGATTTCTTCTGGAGGCTTTACGTATGCTTGTACACTCT  271

seq1  TCACTGACAGGAATACAGAACTTCCACAAATAGGTGAGTATTTCCGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGACAGGAATACAGAACTTCCACAAATAGGTGAGTATTTCCGAGTT  321

seq1  CTAAGAAAGATAAAGGGTGTGAACACGAGCAGACATGGCTCAGGTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAGATAAAGGGTGTGAACACGAGCAGACATGGCTCAGGTTCATA  371

seq1  AAACATTGGTAAAAATTTTAATTTGAATGTACTGTATGACGTATTTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGGTAAAAATTTTAATTTGAATGTACTGTATGACGTATTTGTGT  421

seq1  AGAGGAGGGCATGGATTTTTGCCACAGTGAAAATGTGTAGACCAGAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGGCATGGATTTTTGCCACAGTGAAAATGTGTAGACCAGAGGTC  471

seq1  AACCTTGGTTCCTGTACCATGAACTTCTGTGGGTTCTACTGTTTCTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGTTCCTGTACCATGAACTTCTGTGGGTTCTACTGTTTCTATTG  521

seq1  TCTATATCACCATAAGCAAGCTGAAATGATAGATGAACACTACTGCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATCACCATAAGCAAGCTGAAATGATAGATGAACACTACTGCAGTC  571

seq1  TGCTTGCCATTTTTGTGTCTCTTGTCCATGCACTTGCTTTGCAAATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCATTTTTGTGTCTCTTGTCCATGCACTTGCTTTGCAAATGATT  621

seq1  TGTCCATTGGGTTCTCTCCTTACCCCATGCCAATGTTTACTTTTGTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTGGGTTCTCTCCTTACCCCATGCCAATGTTTACTTTTGTGTAC  671

seq1  TGCGAATAAATATGTTTCTACAAAATCAAATGAGGGGCCTAAATTTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAATAAATATGTTTCTACAAAATCAAATGAGGGGCCTAAATTTCACA  721

seq1  ATACATGCTGGAGACCAAATGGGGAGAAGCTTAAAGAGATTTGCAAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCTGGAGACCAAATGGGGAGAAGCTTAAAGAGATTTGCAAACTT  771

seq1  TGGTTGAATTTTACAATAAATTTAATCATGATCTGTATAAACTGTAAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAATTTTACAATAAATTTAATCATGATCTGTATAAACTGTAAGCT  821

seq1  GTTATATGTGCAGTTGACTGTATAGAATGCATGTGGTTTATATGTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGTGCAGTTGACTGTATAGAATGCATGTGGTTTATATGTTTTTG  871

seq1  TAGTCATTACCAAAAACTACATTTGCTAAGAAATTACTTCTGGTGAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTACCAAAAACTACATTTGCTAAGAAATTACTTCTGGTGAGGAA  921

seq1  ATGTTTAGTTTATTATTAAGTTTAAAGAAATATGTATGAACGTTTGTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGTTTATTATTAAGTTTAAAGAAATATGTATGAACGTTTGTAAA  971

seq1  CAGTCTTAGTGTTATTGATCTTCCCATATTCTGTCATTGGCCATCCCTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTAGTGTTATTGATCTTCCCATATTCTGTCATTGGCCATCCCTCC  1021

seq1  CTTCACCCGAGTTAAGTGCCCCTTCCATTTTTCCATTTCACTGTTCATAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCGAGTTAAGTGCCCCTTCCATTTTTCCATTTCACTGTTCATAC  1071

seq1  ACAGCACTCCTGTCCTTCACCAGAGCTCCCTCTCGCTATGCCCATCATCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTCCTGTCCTTCACCAGAGCTCCCTCTCGCTATGCCCATCATCC  1121

seq1  ATTTTATTTTCCTTGTCTTGTGAATGCATTGGAATTTATACACTCATCTA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTCCTTGTCTTGTGAATGCATTGGAATTTATACACTCATCTA  1171

seq1  AATAAAGCTCAGAATGAGAATTC  1223
      |||||||||||||||||||||||
seq2  AATAAAGCTCAGAATGAGAATTC  1194

seq1: chr14_112427824_112428964
seq2: B6Ng01-102E05.g_68_1213

seq1  GAATTCAATGTGCCAGGAACTCTTCGAGGTGCTGAAAATATTAATGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTGCCAGGAACTCTTCGAGGTGCTGAAAATATTAATGTGAA  50

seq1  ATGCAGAAAACACATTTATCTCCAGGAGGTTACAGCCTAGAGAAAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAACACATTTATCTCCAGGAGGTTACAGCCTAGAGAAAAAGAA  100

seq1  AAATTAGTACTCCTATGTAGAGTAGAGAAGGATACACATCCTATTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTACTCCTATGTAGAGTAGAGAAGGATACACATCCTATTTGGGA  150

seq1  AAAAAATAACCTTTACACGAAACAAGAGAGCTAAAGTAATCATGAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAACCTTTACACGAAACAAGAGAGCTAAAGTAATCATGAACTTG  200

seq1  GAGTTCAAAGCCAAAGAAGACAAGTTACCATGTAGGCTTACTTCATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAAGCCAAAGAAGACAAGTTACCATGTAGGCTTACTTCATTTCT  250

seq1  AAAATGTGAAATGAACTGAGGAATAGATTTAATGTGGGCACTGAAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGAAATGAACTGAGGAATAGATTTAATGTGGGCACTGAAAAGAG  300

seq1  AGGGATGACCTGGAGCATAGCCAAAGGGTCATTACTTCACGTTGTCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGACCTGGAGCATAGCCAAAGGGTCATTACTTCACGTTGTCATTG  350

seq1  CGGGAACATTTTAACTTATCCATAGGGCACAGGAGCTCTAAAAAGGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAACATTTTAACTTATCCATAGGGCACAGGAGCTCTAAAAAGGCTAG  400

seq1  CTAGCAGTCCGAGGCTTCCATTTTAATACATACTTTGGTTCATGCAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTCCGAGGCTTCCATTTTAATACATACTTTGGTTCATGCAATCT  450

seq1  GAGTAGACAAAAAGCATAAAATATAATAGGAAAACTAACAAAATATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGACAAAAAGCATAAAATATAATAGGAAAACTAACAAAATATGTTT  500

seq1  AGAAGTAATGATATGTAGTGATTTATTGATATGCACAATGATTGTTAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAATGATATGTAGTGATTTATTGATATGCACAATGATTGTTAGCA  550

seq1  TCTCTCATAAGGAAAAACAATCTATATTTAAGCACTTATATCTTATAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATAAGGAAAAACAATCTATATTTAAGCACTTATATCTTATAGAC  600

seq1  GAAGAAATACATGCATTTCTTGAGAAATTAGTAATTGGCACAAAAACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATACATGCATTTCTTGAGAAATTAGTAATTGGCACAAAAACAAG  650

seq1  CACAAAGGCCTCCTGATCAGAACTACAATTATTTCACTATAGGACTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGCCTCCTGATCAGAACTACAATTATTTCACTATAGGACTCCTA  700

seq1  TAGAATTTCAGCTCTTTTACACAATCTGATTGCATCC-GGGGGGGGGGGG  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGAATTTCAGCTCTTTTACACAATCTGATTGCATCCGGGGGGGGGGGGG  750

seq1  CAAAGAATGAATGCAAATATTTTTTTTAAAATCATTATTTGATTTGTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATGAATGCAAATATTTTTTTTAAAATCATTATTTGATTTGTAAT  800

seq1  TTTATTGCCTTCACCAATATGCTTCAGAGAATTTGACATAGAGATTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGCCTTCACCAATATGCTTCAGAGAATTTGACATAGAGATTTGAA  850

seq1  AGTGGTGAGTTCTGAACATAAAAATAGAATGTCTATGGTTTTATTCATAT  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTGGTGAGTTCTGAACATAAAAATAGAATGTCTAT-GTTTTATTCATAT  899

seq1  TTAGGAGCAGCAGCTTGAAGGAAGGGAAACTGCAGCTGTACTTTTCCATG  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-GGAGCAGCAGCTTGAAGGAAGGGAAACTGCAGCTGTACTTTTCCATG  948

seq1  TTACTAAGCAACTGGTAT-GAGTCAAGCAAAATCTCTGAAACTCAT-AGG  997
       |||| |||||||||||| |||||||||||||| |||||||||||| |||
seq2  -TACT-AGCAACTGGTATGGAGTCAAGCAAAATTTCTGAAACTCATAAGG  996

seq1  TGCCAGT-AGGAGCATGCCACGTGAC-ATTTGAAGAAAAGAAATCAT-AT  1044
      ||||||| ||||||||||  |||||| ||| |||||||||||||||| ||
seq2  TGCCAGTAAGGAGCATGCACCGTGACAATTGGAAGAAAAGAAATCATAAT  1046

seq1  G-AGGTTGATCTACCTG-TCAACTCCCAG-CATGCTAT-TAAGA--TATA  1088
      | | ||  ||||||||| || |||||||| |||||||| |||||   |||
seq2  GAATGTGAATCTACCTGTTCCACTCCCAGCCATGCTATATAAGAATAATA  1096

seq1  AAATGAGGGTCGTTACAACTTTAATAATGCAGATTTAATTTTAAAGACTG  1138
      ||  |||||||||||||| | ||||||||||||||||   || |||||||
seq2  AATGGAGGGTCGTTACAA-TCTAATAATGCAGATTTA--CTTGAAGACTG  1143

seq1  GCA  1141
      |||
seq2  GCA  1146