BAC Information

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BAC

Clone NameB6Ng01-104C10
Chromosome14 (Build37)
Map Location 109,010,900 - 109,012,053
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1, LOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104C10.bB6Ng01-104C10.g
ACCDH912534DH912535
length1,2561,127
definitionDH912534|Mus musculus domesticus DNA, BAC clone: B6Ng01-104C10, 5' end.DH912535|Mus musculus domesticus DNA, BAC clone: B6Ng01-104C10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccactgaaattagtaggcttaactttttgaaaacctattttaa
ttatggttctttaaaacttcaacttcccttctagcccatcagagttagga
gaaaagaaaggttaataggaaacaggtttgtggacctgtttagaactagt
tctttggggttattcaagtctttatcataggcattctagtacacaagaaa
accacaaattagcagtgacagcttgatcaagaagaagcttttagacttca
tctatttgcaagaagcagccagaacaccaccagaagttctttggtctgtt
ttgctctgtgaagtcaagacaagtgaagatcagcaaagaaagcaagacca
atcaaatgaatgaacgtcctcagtgaagatcactatcagcaaccccgcaa
aaagaccagcaaagagttgcaaggcaaactaatgcaagaactttaactac
tgtcttttggttgtaaatatcctttttcaaaatatcacctgttctctcaa
aagtctgctccagtaaaacttcacatgacctttcataagggagcttacag
aaaagcaccatgtgtctgttctcagcaaagcaccctctcataagccagtt
tccagaaaaaaacatcacatgacacaactgactctccaacaaaatccaaa
ataattccaacttcatagaactgtaacccatttttagctgggttacttgg
gggtgcttaatttcttgattttttttatatattctaggtattagccctct
ggaagattggggaagatcttttccaattctgtgggctgccatattgtttt
attgaggttgtcctttgcctgataggagattttcagtttcatgtggtccc
atttagtaattcagtgttctggtcagaaagcaatctcctgtatcaatgtc
ttcaagactattccacaatttttcttttattagatttagtgtgtccagtt
tcaagttgaggatcatttattcacttggatttgtgtttttcaaaggataa
taaatatagatcatttgcattcttcacatgaattacatcagttagacagc
atcattttttgaaattgcgttcttttttttttttttttcaatttacaggt
ttggcctcttatttgaaatcaggtgtccacagtgttgcgtttttttttcc
ccttggtcatcatccttcgaatcacctgtccttttagtctctcactaggc
aatttcattactactgccttgctagtggaattgtggtgagtctcagatca
cgagta
gaattccagttcagccagggctacacagagaaatgtctcgaaaaacaaaa
caaacaaacaaaagaagggcttttttacactacacttaatagagtagtct
ttgattaggtcattaaattttcctctaattttattatagcaattttggtg
ctccttcatgataatatttctgtatataatttcatccattagacactttt
ggacctgatgtttttaagaaaaatgaaaaactgttgaatgtatattagac
ctaaataaattggctaacaaaaatgttggctatttgttcaaagttttgct
attattaaaaatgagtcgataaatctgaaaatttcaacatcctgcaaagt
aaaattactactattaaggcatactgaggtaagtaaacttttcttcattc
ccagtcatcaaaaataccagtccttcatgattgcttacaaatcttaaaac
tactggatgtgggagtaaaagcatcatgtgagtttctttgagatattgac
tttactagagatagtgaataaataaaagatctgttctggctactcaagtt
tgtgatttccaggttgttcttttctgctattatgaatgtttagagagaac
tgatccctaggtgaagcatcgttaaagttgaaacttttgaaaaagaaaaa
tatccaagcttcaaaaggtgaaacttttctttctttactatttttttttt
aattttaaaaggttatattttgcagttgtaaagccatgttcctagctgat
caatactcattcaataaataattgtagctgaaagaagaaatgtggtcaaa
tcccttactcttccttaagtgattaaaaaaatcgatgttacccatgaaca
gttaagcaagcctgacttgaacgcttgatagacatggaggagcaaagcag
ctctcattagaacctagatcaattctggctgatctggtcttttatggttt
gcatacatttttccactttgcattattctaatgtttttaaatccactaaa
tttttataggcagcaaagaaaattaaaaaaagggctaagaaataatcagt
attggactatccatttaaaatatgaggtaaatcaaaatacagatttaatg
taccttatgaatataagcgaatctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109010900_109012053
seq2: B6Ng01-104C10.g_68_1194 (reverse)

seq1  AAAAGATCTGCTTTATAATTCATAATGATCAATTTAAAAATCTGTATTTT  50
      |||||||  || |||| |||||||| |  || |    |||||||||||||
seq2  AAAAGATTCGC-TTAT-ATTCATAAGGTACATT----AAATCTGTATTTT  44

seq1  GAATTTTACTTCAAATTATTTTTAAAATGTGATAGTCCAATACTGAATTA  100
      ||  ||||| |||   ||||||  ||||| ||||||||||||||| ||||
seq2  GA--TTTACCTCA---TATTTT--AAATG-GATAGTCCAATACTG-ATTA  85

seq1  ATTTTCTTTAGCTCTTTTTTTTAATTTTTCTTTTGCTGCCTTATAAAAAA  150
        |||| ||||| | |||||||||||||   ||||||||| |||||||| 
seq2  --TTTC-TTAGC-CCTTTTTTTAATTTT--CTTTGCTGCC-TATAAAAA-  127

seq1  TTTAAGTGGATTTAAAAAACATTAGAAT-ATGCAAAGTGGAAAAATGTAT  199
       || ||||||||| |||||||||||||| |||||||||||||||||||||
seq2  -TTTAGTGGATTT-AAAAACATTAGAATAATGCAAAGTGGAAAAATGTAT  175

seq1  GCAAACCATAAAAGACCAGATCAAGCCAGAATTGATCTAGGTTCTAATTG  249
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  GCAAACCATAAAAGACCAGATC-AGCCAGAATTGATCTAGGTTCTAA-TG  223

seq1  AGAGCTGCTTTGCTCCTCCATGTCTATTCAAGCGTTCAAGTCAGGCTTGC  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGCTGCTTTGCTCCTCCATGTCTA-TCAAGCGTTCAAGTCAGGCTTGC  272

seq1  TTAACTGTTCATGGGTAACATCGATTTTTTTAATCACTTAAGGAAGAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTCATGGGTAACATCGATTTTTTTAATCACTTAAGGAAGAGTA  322

seq1  AGGGATTTGACCACATTTCTTCTTTCAGCTACAATTATTTATTGAATGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTGACCACATTTCTTCTTTCAGCTACAATTATTTATTGAATGAG  372

seq1  TATTGATCAGCTAGGAACATGGCTTTACAACTGCAAAATATAACCTTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCAGCTAGGAACATGGCTTTACAACTGCAAAATATAACCTTTTA  422

seq1  AAATTAAAAAAAAAATAGTAAAGAAAGAAAAGTTTCACCTTTTGAAGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAAAAAAATAGTAAAGAAAGAAAAGTTTCACCTTTTGAAGCTT  472

seq1  GGATATTTTTCTTTTTCAAAAGTTTCAACTTTAACGATGCTTCACCTAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTCTTTTTCAAAAGTTTCAACTTTAACGATGCTTCACCTAGG  522

seq1  GATCAGTTCTCTCTAAACATTCATAATAGCAGAAAAGAACAACCTGGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTCTCTCTAAACATTCATAATAGCAGAAAAGAACAACCTGGAAA  572

seq1  TCACAAACTTGAGTAGCCAGAACAGATCTTTTATTTATTCACTATCTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACTTGAGTAGCCAGAACAGATCTTTTATTTATTCACTATCTCTA  622

seq1  GTAAAGTCAATATCTCAAAGAAACTCACATGATGCTTTTACTCCCACATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTCAATATCTCAAAGAAACTCACATGATGCTTTTACTCCCACATC  672

seq1  CAGTAGTTTTAAGATTTGTAAGCAATCATGAAGGACTGGTATTTTTGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTTTAAGATTTGTAAGCAATCATGAAGGACTGGTATTTTTGATG  722

seq1  ACTGGGAATGAAGAAAAGTTTACTTACCTCAGTATGCCTTAATAGTAGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAATGAAGAAAAGTTTACTTACCTCAGTATGCCTTAATAGTAGTA  772

seq1  ATTTTACTTTGCAGGATGTTGAAATTTTCAGATTTATCGACTCATTTTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTTGCAGGATGTTGAAATTTTCAGATTTATCGACTCATTTTTA  822

seq1  ATAATAGCAAAACTTTGAACAAATAGCCAACATTTTTGTTAGCCAATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCAAAACTTTGAACAAATAGCCAACATTTTTGTTAGCCAATTTA  872

seq1  TTTAGGTCTAATATACATTCAACAGTTTTTCATTTTTCTTAAAAACATCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCTAATATACATTCAACAGTTTTTCATTTTTCTTAAAAACATCA  922

seq1  GGTCCAAAAGTGTCTAATGGATGAAATTATATACAGAAATATTATCATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAAAGTGTCTAATGGATGAAATTATATACAGAAATATTATCATGA  972

seq1  AGGAGCACCAAAATTGCTATAATAAAATTAGAGGAAAATTTAATGACCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACCAAAATTGCTATAATAAAATTAGAGGAAAATTTAATGACCTA  1022

seq1  ATCAAAGACTACTCTATTAAGTGTAGTGTAAAAAAGCCCTTCTTTTGTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGACTACTCTATTAAGTGTAGTGTAAAAAAGCCCTTCTTTTGTTT  1072

seq1  GTTTGTTTTGTTTTTCGAGACATTTCTCTGTGTAGCCCTGGCTGAACTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTGTTTTTCGAGACATTTCTCTGTGTAGCCCTGGCTGAACTGG  1122

seq1  AATTC  1154
      |||||
seq2  AATTC  1127