BAC Information

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BAC

Clone NameB6Ng01-104H16
Chromosome14 (Build37)
Map Location 104,448,491 - 104,629,959
singlet/doubletdoublet
Overlap genenone
Upstream geneIrg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103, LOC100043466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104H16.bB6Ng01-104H16.g
ACCDH912767DH912768
length1,1521,111
definitionDH912767|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H16, 5' end.DH912768|Mus musculus domesticus DNA, BAC clone: B6Ng01-104H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,448,491 - 104,449,541)(104,628,843 - 104,629,959)
sequence
gaattcattgttaacaactgggatcaacaatgaactccacctaagattca
cttaatcttagaagccaggctcaagggctttgtgcccttgccataattcc
tattttagtttattgtatagtccacctttcccctaggccattgtaaatac
gtgtgtatgggtgtaactcagctatctatagttctaagtatctactctgg
ttcctccttaggtctcaaacttccttcttcctagatgatggtaaattcct
gtgtagggcagtgacttagcttttattcaaagtgatagtgtaataccaga
ggcaattctgaatgtcactgaataggcaacattcttactgaattccaagc
ccatggtctgctcaaggactttctaggacattggaacactggtgaaggct
tggctatgtcagaattcaatctttaaaggcacttataataggataatact
aaaaaagagcacatagatccatacaccagactaactcgggagtggaatat
taatgtatgggttagagaggacgccagactccaggaggtaagtttctgtg
aaactcttttgcctcctgagtagcttctaagcctctcggcctgtcaagca
gactcgaccagagtgcatggcacttgctattaagaatcaacagccaggat
atcctagtattagtgaaggattcaagaattcaattttgtaacaagttctc
agatgatgttggtctgagacagagccactttctgtataaaagaaggtgat
aggagtaaaaaattgaactttcctttgttccccttcatgtgcacacaatg
aagtctactctcttagcaaagaagcctctcattgcagtgaacagaatgca
aagcctcatggctgcccacactattgaaaataagattcagccgaagggcc
cagctctatcaagatctttacatcacttcctcaaggctcaaagaacattg
cggaagaggtggcagaaagaatgtaagagctggcagttaagagacctgct
gaaaagcatcattctaaccatggtacaccatgggaccatgaactcacagt
cgctgtggcctactgactggctataggaccacccaattgggccccacaaa
ttgggggtggggaggggctcaaaaaagccaattactatgctgcaattctg
gg
gaattcttacttcctttgttcttcttcaagtgtagaatttagcaggaaat
ttgaaattggcaggatagactggctaacaattcctgggaactttataagt
gtctcatcactggtaaaacaaggagattcttcactgggaaggtgattctg
ggagtaaaaaaaaatcacttaatataagcagtaacttaaatacttaggac
tatgaaccagcaaagttagtttctaataatagatttatgctatagcaatc
ttttattaattatttctacccatgttcatatgctagtttctttttccaat
ttgtgtattagctcttatttctaatgatgctgattaaaatttgaatactc
caatttagagaatcttcaccattgcacaaagaaacctaatttgctagcca
atttattatacaaagctgtccaactacaggccaaaagagccctggctctg
tttacagctatctcaaattaaacacagatctaatttgtaaattattatca
cccttggacttcagaattcttttattccctttcctgggaagaactcatat
cattttttttcttgcatgtaatcatttacatttttgaaggccaagtttct
ttttatgtagatagttctaacttctttggattatatttctgatgtccctg
gtgtttggtgcttttcccaagctaggaacattttaaaattttatgagtat
gtttagagatctgcatcttcctccaatacattaaaaaagatgttgagcta
gtatctcatacacatccctatggtaccacacttactatagcttatcagtt
caacaaagattctgtaaacattattcaattcatttcaacaaatgtctcgg
tatatagataatgtgaataaggttatgggttcaattcttcctcatcataa
aaaagctgtctataaaatatgggatgccaaatgtccccatacctccccac
tccctatcacttcttggctctggcatcccctgtattgggcatataaagtt
tgcagtccatgggctctctttcagtgatggctgactaggtcattctttga
ataataatgcagctagaagacaccgagccttgggggtactgttaggtcat
atttgttgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104448491_104449541
seq2: B6Ng01-104H16.b_158_1185

seq1  CCTTTCCCCTAGGCCATTGTAAATACGTGTGTATGGGTGTAACTCAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCCTAGGCCATTGTAAATACGTGTGTATGGGTGTAACTCAGCTA  50

seq1  TCTATAGTTCTAAGTATCTACTCTGGTTCCTCCTTAGGTCTCAAACTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTTCTAAGTATCTACTCTGGTTCCTCCTTAGGTCTCAAACTTCC  100

seq1  TTCTTCCTAGATGATGGTAAATTCCTGTGTAGGGCAGTGACTTAGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTAGATGATGGTAAATTCCTGTGTAGGGCAGTGACTTAGCTTTT  150

seq1  ATTCAAAGTGATAGTGTAATACCAGAGGCAATTCTGAATGTCACTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGTGATAGTGTAATACCAGAGGCAATTCTGAATGTCACTGAATA  200

seq1  GGCAACATTCTTACTGAATTCCAAGCCCATGGTCTGCTCAAGGACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATTCTTACTGAATTCCAAGCCCATGGTCTGCTCAAGGACTTTCT  250

seq1  AGGACATTGGAACACTGGTGAAGGCTTGGCTATGTCAGAATTCAATCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTGGAACACTGGTGAAGGCTTGGCTATGTCAGAATTCAATCTTT  300

seq1  AAAGGCACTTATAATAGGATAATACTAAAAAAGAGCACATAGATCCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTTATAATAGGATAATACTAAAAAAGAGCACATAGATCCATAC  350

seq1  ACCAGACTAACTCGGGAGTGGAATATTAATGTATGGGTTAGAGAGGACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTAACTCGGGAGTGGAATATTAATGTATGGGTTAGAGAGGACGC  400

seq1  CAGACTCCAGGAGGTAAGTTTCTGTGAAACTCTTTTGCCTCCTGAGTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCAGGAGGTAAGTTTCTGTGAAACTCTTTTGCCTCCTGAGTAGC  450

seq1  TTCTAAGCCTCTCGGCCTGTCAAGCAGACTCGACCAGAGTGCATGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGCCTCTCGGCCTGTCAAGCAGACTCGACCAGAGTGCATGGCACT  500

seq1  TGCTATTAAGAATCAACAGCCAGGATATCCTAGTATTAGTGAAGGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAAGAATCAACAGCCAGGATATCCTAGTATTAGTGAAGGATTCA  550

seq1  AGAATTCAATTTTGTAACAAGTTCTCAGATGATGTTGGTCTGAGACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAATTTTGTAACAAGTTCTCAGATGATGTTGGTCTGAGACAGAG  600

seq1  CCACTTTCTGTAT-AAAGAAGGTGATAGGAGTAAAAAATTGAACTTTCCT  649
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCTGTATAAAAGAAGGTGATAGGAGTAAAAAATTGAACTTTCCT  650

seq1  TTGTTCCCCTTCATGTGCACACAATGAAGTCTACTCTCTTAGCAAAGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCCCTTCATGTGCACACAATGAAGTCTACTCTCTTAGCAAAGAAG  700

seq1  CCTCTCATTGCAGTGAACAGAATGCAAAGCCTCATGGCTGCCCACACTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCATTGCAGTGAACAGAATGCAAAGCCTCATGGCTGCCCACACTAT  750

seq1  TGAAAATAAGATTCAGCCG-AGGGCCCAGCTCTAATCAAGATCTTTACAT  798
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  TGAAAATAAGATTCAGCCGAAGGGCCCAGCTCT-ATCAAGATCTTTACAT  799

seq1  CACTTCCTCAAGGCTCAGAGAACATTGCGGAAGAGGTGGCAGAAAGAATG  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACTTCCTCAAGGCTCAAAGAACATTGCGGAAGAGGTGGCAGAAAGAATG  849

seq1  TAAGAGCTGGCAGTTAAAGAGACCGGCTGAAAAGCATCA-TCTAACCATG  897
      ||||||||||||||| |||||||| |||||||||||||| ||||||||||
seq2  TAAGAGCTGGCAGTT-AAGAGACCTGCTGAAAAGCATCATTCTAACCATG  898

seq1  GTACAACCATGGGAACCATGAACTCACAGCCGCTGT-GCCTACTGACTGG  946
      |||| |||||||| ||||||||||||||| |||||| |||||||||||||
seq2  GTAC-ACCATGGG-ACCATGAACTCACAGTCGCTGTGGCCTACTGACTGG  946

seq1  CTATAGGACCACCCAAATTGGGCCCACACAAAAATATGGGTGGGGAAGGG  996
      |||||||||||||| |||||||||| ||| ||| |  |||||||| ||||
seq2  CTATAGGACCACCC-AATTGGGCCC-CAC-AAATTGGGGGTGGGG-AGGG  992

seq1  GCTCAGAGAAGCCAATTACTTACTGCTGCTA-TCTTGGCAAATGACAGAT  1045
      ||||| | ||||||||||||   |||||| | ||| ||            
seq2  GCTCAAAAAAGCCAATTACT--ATGCTGCAATTCTGGG------------  1028

seq1  TCTGGG  1051
            
seq2  ------  1028

seq1: chr14_104628843_104629959
seq2: B6Ng01-104H16.g_67_1177 (reverse)

seq1  GAACAAC-AATATGAACTAACCAGTACCCCCAGAGCTC-GTGTC-TCTAG  47
      ||||||| ||||||| |||| |||||||||||  |||| ||||| |||||
seq2  GAACAACAAATATGACCTAA-CAGTACCCCCAAGGCTCGGTGTCTTCTAG  49

seq1  CTGCA-TATGTATCAAAAGATGACCTAGTCAGCCATCACTGGAAAGAGAG  96
      ||||| |||   |||||  ||||||||||||||||||||| |||||||| 
seq2  CTGCATTATTATTCAAAGAATGACCTAGTCAGCCATCACT-GAAAGAGA-  97

seq1  GCCCATTGGACTTGCAAACTTTATATGCCCCAATACAGGGGAATGCCAGA  146
      ||||| ||||| ||||||||||||||| ||||||||||||| ||||||||
seq2  GCCCA-TGGAC-TGCAAACTTTATATG-CCCAATACAGGGG-ATGCCAGA  143

seq1  GCCAAGAAGTGGATAGGGGAGTGGGGGAGGTATGGGGGACATTTGGCATC  196
      |||||||||| |||| |||||| |||||||||| ||||||||||||||||
seq2  GCCAAGAAGT-GATA-GGGAGT-GGGGAGGTAT-GGGGACATTTGGCATC  189

seq1  CCATATTTTATAGACAGCTTTTTTATGATGAGG-AGGATTGAACCCATAA  245
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  CCATATTTTATAGACAGCTTTTTTATGATGAGGAAGAATTGAACCCATAA  239

seq1  CCTTATTCACATTATCTATATACCGAGACATTTGTTGAAATGAATTGAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCACATTATCTATATACCGAGACATTTGTTGAAATGAATTGAAT  289

seq1  AATGTTTACAGAATCTTTGTTGAACTGATAAGCTATAGTAAGTGTGGTAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTACAGAATCTTTGTTGAACTGATAAGCTATAGTAAGTGTGGTAC  339

seq1  CATAGGGATGTGTATGAGATACTAGCTCAACATCTTTTTTAATGTATTGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGATGTGTATGAGATACTAGCTCAACATCTTTTTTAATGTATTGG  389

seq1  AGGAAGATGCAGATCTCTAAACATACTCATAAAATTTTAAAATGTTCCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGCAGATCTCTAAACATACTCATAAAATTTTAAAATGTTCCTA  439

seq1  GCTTGGGAAAAGCACCAAACACCAGGGACATCAGAAATATAATCCAAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAAAAGCACCAAACACCAGGGACATCAGAAATATAATCCAAAGA  489

seq1  AGTTAGAACTATCTACATAAAAAGAAACTTGGCCTTCAAAAATGTAAATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAACTATCTACATAAAAAGAAACTTGGCCTTCAAAAATGTAAATG  539

seq1  ATTACATGCAAGAAAAAAAATGATATGAGTTCTTCCCAGGAAAGGGAATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGCAAGAAAAAAAATGATATGAGTTCTTCCCAGGAAAGGGAATA  589

seq1  AAAGAATTCTGAAGTCCAAGGGTGATAATAATTTACAAATTAGATCTGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTCTGAAGTCCAAGGGTGATAATAATTTACAAATTAGATCTGTG  639

seq1  TTTAATTTGAGATAGCTGTAAACAGAGCCAGGGCTCTTTTGGCCTGTAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGAGATAGCTGTAAACAGAGCCAGGGCTCTTTTGGCCTGTAGT  689

seq1  TGGACAGCTTTGTATAATAAATTGGCTAGCAAATTAGGTTTCTTTGTGCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCTTTGTATAATAAATTGGCTAGCAAATTAGGTTTCTTTGTGCA  739

seq1  ATGGTGAAGATTCTCTAAATTGGAGTATTCAAATTTTAATCAGCATCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAAGATTCTCTAAATTGGAGTATTCAAATTTTAATCAGCATCATT  789

seq1  AGAAATAAGAGCTAATACACAAATTGGAAAAAGAAACTAGCATATGAACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGAGCTAATACACAAATTGGAAAAAGAAACTAGCATATGAACA  839

seq1  TGGGTAGAAATAATTAATAAAAGATTGCTATAGCATAAATCTATTATTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAAATAATTAATAAAAGATTGCTATAGCATAAATCTATTATTAG  889

seq1  AAACTAACTTTGCTGGTTCATAGTCCTAAGTATTTAAGTTACTGCTTATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACTTTGCTGGTTCATAGTCCTAAGTATTTAAGTTACTGCTTATA  939

seq1  TTAAGTGATTTTTTTTTACTCCCAGAATCACCTTCCCAGTGAAGAATCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGATTTTTTTTTACTCCCAGAATCACCTTCCCAGTGAAGAATCTC  989

seq1  CTTGTTTTACCAGTGATGAGACACTTATAAAGTTCCCAGGAATTGTTAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTACCAGTGATGAGACACTTATAAAGTTCCCAGGAATTGTTAGC  1039

seq1  CAGTCTATCCTGCCAATTTCAAATTTCCTGCTAAATTCTACACTTGAAGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATCCTGCCAATTTCAAATTTCCTGCTAAATTCTACACTTGAAGA  1089

seq1  AGAACAAAGGAAGTAAGAATTC  1117
      ||||||||||||||||||||||
seq2  AGAACAAAGGAAGTAAGAATTC  1111