BAC Information

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BAC

Clone NameB6Ng01-105B08
Chromosome14 (Build37)
Map Location 52,824,853 - 52,825,990
singlet/doubletsinglet
Overlap geneChd8
Upstream geneEar11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h
Downstream geneRab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B08.bB6Ng01-105B08.g
ACCDH913198DH913199
length1,141811
definitionDH913198|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B08, 5' end.DH913199|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctgcctgcctcttgcttcccaattaggtgtgcaccaccatgc
ccagaaaatttttattatacttgctttgtgtgcaagcatgtatatttttg
acatgtgtgtctagtgcccaataaggtcaggaatggcatttcccctggaa
ctggagttatggagagttgtttaccaccatgtgagtgctgggaaccaaac
ctatgtcctctgcaaaagcaacaagtattcttaaccactaagccatctct
ccagccccttatttattttttttaataaaaaaaaaaaaaaagaattcatt
gtgaaaaggatttagtataggtgtagacacagtgtctgagtcaaagggga
tagcagaggcacgatgatgaaagtacctggcagttggcatgcactttata
agagagagctgcctgctgtcctcactgtaagtttcaggaattataaacca
tccacagcatagccaggtttcctgtcttctggtcaccattgctttccctt
tccctgtcacaggtggacaaggcgtgagcaaactgatttctaccgagtag
tatctacctttggtgtggagtatgaccctgacaacatgcagtttcactgg
gatcgcttccgcacttttgctcgcctggacaaaaaaacagatgaaagcct
taccaagtacttccatggttttgtggccatgtgtcgacaagtgtgccgcc
ttcccccagctgctggtgatggtgagatggtagagtctagggtaaacggg
tctgtgttgttaacacatcaacctttggtttattttcttttctcacctat
gttggttgcagaacctccagaccctaaattctgttcattgagcccatcac
tgaagagagagcctcgaagactctctaccgaattgagtggcttcgacgct
taacgggaacaagtttaatgccacccccttttagaaagatcggctggcat
tgtgtcagccctccaggtcttgaattgcccaaatggtggggactctgtcc
gtcatgatgggggagctcctacgaggagcatccgccatggggtgagccaa
acagactgcacatcatgcaggaccagactctcttttctgggtgtcccgat
gaattatatgcagaccatcaggcgtgaacatcactgcatcc
gaattcactggccccaaagaaggacaggaaagtcaccatggaaagagaga
cagaggggagggggaagagaaagagagaaaatgcgtgcagagagagaaag
aaaaagggggcagagaaatcaaaaaagtctgaattatgcagggaggagcc
tctggggaaagcagctcagcccttgggttggaaagttcagggttggggtc
tggatgtgccaagtagggactgggggatgctgggagaacctggagaccag
gtcagcttcagtaagtaaaataaggacctcaggcccttgccccagtctga
aaccaacaccatttttccctatctacttgtttagatctttgggggtttct
ctgcgggtacattttattgctacgcttccaagtgcactgatcttttcttt
tgcagtatctagtctgcaactgtttaatgcatattttcacttggacctgt
cattttcatatctagattttgattgcatcgtcctctggtttccatttctt
tgctcagtttttgtacctttcctttactgagaacagctgctttcatgtgc
ttctgagctaacttgaacgtgtctgttctggcttgcctcatgcttcacta
acctctttatgggtcatattttcctgtctctttacatgcctaataatttg
ttgggatatgagatattgtgcattgtcacctcgtaggggctagatggttt
ttgtttctttttttgttgttgttgtgttttctaaaaggccaaggattttt
ttgtagaatgagatatggtgcagtgggaggggtgttcttggcaggttcat
gctgaggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52824853_52825990
seq2: B6Ng01-105B08.b_43_1183 (reverse)

seq1  GGATGCAGCTGATGCTCCCGCCTGATGGTTCTGCATATAATTCATACGGG  50
      |||||||| ||||| || |||||||||| ||||||||||||||||  || 
seq2  GGATGCAG-TGATGTTCACGCCTGATGG-TCTGCATATAATTCATCGGGA  48

seq1  CAGCCAGAAAAGAGAAGTCTGGGTCCTGCATGATGTTGCAGTCTGTTTGG  100
      || ||||||||||| ||||| |||||||||||||| ||||||||||||||
seq2  CACCCAGAAAAGAG-AGTCT-GGTCCTGCATGATG-TGCAGTCTGTTTGG  95

seq1  CTCACCCCATGGCGGGCTGCTCCTCGTAGGAGCT-CCCCATCATGACGGA  149
      ||||||||||||| || ||||||||||||||||| |||||||||||||||
seq2  CTCACCCCATGGC-GGATGCTCCTCGTAGGAGCTCCCCCATCATGACGGA  144

seq1  CAG-GTTCCCACCATTTGGGCAATTCAAGACCTGGA-GGCTGACACAATG  197
      ||| || ||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGAGTCCCCACCATTTGGGCAATTCAAGACCTGGAGGGCTGACACAATG  194

seq1  CCAGCCGATC-TTCTAAAAGGGGGTGGCATAAAACTTGTTCCCG-TAAGC  245
      |||||||||| ||||||||||||||||||| ||||||||||||| |||||
seq2  CCAGCCGATCTTTCTAAAAGGGGGTGGCATTAAACTTGTTCCCGTTAAGC  244

seq1  GTCGAAGCAACTCAATTCGGTAGAGAGTCCTCGAGGCTCTCTCTTCAGTG  295
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  GTCGAAGCCACTCAATTCGGTAGAGAGTCTTCGAGGCTCTCTCTTCAGTG  294

seq1  ATGGGCTCAATGAACAGA--TTAGGGTCTGGAGGTTCTGCAACCAACATA  343
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  ATGGGCTCAATGAACAGAATTTAGGGTCTGGAGGTTCTGCAACCAACATA  344

seq1  GGTGAGAAAAG-AAATTAACCAAAGGTTGATGTGTTAACAACACAGACCC  392
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  GGTGAGAAAAGAAAATAAACCAAAGGTTGATGTGTTAACAACACAGACCC  394

seq1  GTTTACCCTAGACTCTACCATCTCACCATCACCAGCAGCTGGGGGAAGGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCCTAGACTCTACCATCTCACCATCACCAGCAGCTGGGGGAAGGC  444

seq1  GGCACACTTGTCGACACATGGCCACAAAACCATGGAAGTACTTGGTAAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACTTGTCGACACATGGCCACAAAACCATGGAAGTACTTGGTAAGG  494

seq1  CTTTCATCTGTTTTTTTGTCCAGGCGAGCAAAAGTGCGGAAGCGATCCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCTGTTTTTTTGTCCAGGCGAGCAAAAGTGCGGAAGCGATCCCA  544

seq1  GTGAAACTGCATGTTGTCAGGGTCATACTCCACACCAAAGGTAGATACTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTGCATGTTGTCAGGGTCATACTCCACACCAAAGGTAGATACTA  594

seq1  CTCGGTAGAAATCAGTTTGCTCACGCCTTGTCCACCTGTGACAGGGAAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTAGAAATCAGTTTGCTCACGCCTTGTCCACCTGTGACAGGGAAAG  644

seq1  GGAAAGCAATGGTGACCAGAAGACAGGAAACCTGGCTATGCTGTGGATGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAATGGTGACCAGAAGACAGGAAACCTGGCTATGCTGTGGATGG  694

seq1  TTTATAATTCCTGAAACTTACAGTGAGGACAGCAGGCAGCTCTCTCTTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTCCTGAAACTTACAGTGAGGACAGCAGGCAGCTCTCTCTTAT  744

seq1  AAAGTGCATGCCAACTGCCAGGTACTTTCATCATCGTGCCTCTGCTATCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCATGCCAACTGCCAGGTACTTTCATCATCGTGCCTCTGCTATCC  794

seq1  CCTTTGACTCAGACACTGTGTCTACACCTATACTAAATCCTTTTCACAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACTCAGACACTGTGTCTACACCTATACTAAATCCTTTTCACAAT  844

seq1  GAATTCTTTTTTTTTTTTTTTATTAAAAAAAATAAATAAGGGGCTGGAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTTTTTTTATTAAAAAAAATAAATAAGGGGCTGGAGA  894

seq1  GATGGCTTAGTGGTTAAGAATACTTGTTGCTTTTGCAGAGGACATAGGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTAGTGGTTAAGAATACTTGTTGCTTTTGCAGAGGACATAGGTT  944

seq1  TGGTTCCCAGCACTCACATGGTGGTAAACAACTCTCCATAACTCCAGTTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCCAGCACTCACATGGTGGTAAACAACTCTCCATAACTCCAGTTC  994

seq1  CAGGGGAAATGCCATTCCTGACCTTATTGGGCACTAGACACACATGTCAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAATGCCATTCCTGACCTTATTGGGCACTAGACACACATGTCAA  1044

seq1  AAATATACATGCTTGCACACAAAGCAAGTATAATAAAAATTTTCTGGGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATACATGCTTGCACACAAAGCAAGTATAATAAAAATTTTCTGGGCA  1094

seq1  TGGTGGTGCACACCT-CTTGGGAAGCAAGAGGCAGGCAGGTGAATTC  1138
      |||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TGGTGGTGCACACCTAATTGGGAAGCAAGAGGCAGGCAGGTGAATTC  1141