BAC Information

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BAC

Clone NameB6Ng01-105B15
Chromosome14 (Build37)
Map Location 100,868,480 - 100,887,277
singlet/doubletdoublet
Overlap geneLOC100043413
Upstream geneLOC668672, EG546623, Klf12
Downstream geneEG668683, EG668684, 1700110M21Rik, LOC100043421, LOC382936, Tbc1d4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B15.bB6Ng01-105B15.g
ACCDH913212DH913213
length1,0761,170
definitionDH913212|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B15, 5' end.DH913213|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,868,480 - 100,869,582)(100,886,093 - 100,887,277)
sequence
gaattccaggacaatcagaactacacaaagaaactctgtctcaaacaaca
acaaaaaacaacaacacccaacaaaccaaacaaaaaattgcattgttgtt
gtcagtgtacactaatacaactctaaaagtatccctacgagacattcata
gcagtgtaggctacacattcctcctttctagcaaactctaattactcttt
caggactcattttgaatggtttctatagattacctcctatgattcccttg
accactctctggtgtaggtgatatagtatgtatttcacagatgagagaaa
tgatagcttgaaaggttaaatagcactgctccaaatttataattgttaca
tcaagggtttgaatgcgtatctttcttatgctaacatttctgtttttttt
ttcttttttttttttttcttttcgagacagggtttctctgtatagccctg
gctgtcctgaaactctctctgtagaccaggctggcctcgaactcagaaat
ccgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccac
gcccggctaacatttctgtttttgcagagtactagcataaatttgctgcc
ttagtctgattacaaattcttccttagtatagactaaagtgtgatagaca
ccttttctgagtttatgatgcagacaacagcaatctcctgtaggtattat
atattcaagtgtcttggagatagcactgtggatctagaacataacttgag
actgtccagtcctaagctctggactcaggaaatgctctcattttcgttta
ttatttgtctggaagatgtgtgaagcaaccttgcttctgagggaaactat
tttacctcagagtacagttttactaagtgacttcctactttaccacacaa
ttgtttcataggagattctcaaagagatacgttctctggaccaaatcacc
cagaagactcattccgccaaaccagagaaagaatgagctaaacaagctca
tcttgtaacacctctgttcgtccatctgagactatgctttacatgtgcta
gatttcagcagacttgtctacagagc
gaattctccctcagccaaattagcacataaaaataaccagcatcttggtt
cttcatacgcccttgggaggacgttgccctctttatcgtattatttattg
gttttccttgacctctttctttcagggtacttagagcatatatgttcttt
gtcacgggaaaagtcagtacttggagactagaaccgttcaatactagcta
tcactggagctaaaaccacactagctaccaatgtgagagcttcagatctg
aaccacattcctggaacctggctctggagccttcacctcatgggcatctc
tgccatagaatctagtaatggaacttctgaccttatttcagcaaaggttc
tttggcatatattgggtttcaggtgttaccattaaataactaatttttcc
tttcatttttgcaagtagtcatcgcttcctgaacctcaatttttcctcct
ttatgaaataatttatttatgataacttgtagtagtttctaatcatcttt
atactttcataataattatatttgattacaatgcacacaaatgctttctc
attgatgatacagttaattacatcgaatatagttaacctcattttgaacg
attcactgtacctgactcactcatgtaccaagcctggtatcagaattact
cccaaacgtgagaattcattgtgtcttatggtaccattcttagagactct
acctcctccaggaacaagttcctggatattttttaggagtcttagaaggt
aaaggttataaacacataggaattttaagtgagaacagacaacaagcctc
tcatcttccatgagctttctgactcccactgaatatcattgcccccttac
tttcttctttctctttggacatctccagctgtctacaaaagatagtcagt
cactcgttaagaatttcatgatcttccaggggcattctgcacctgtgggt
ccattcttcttggttactgtggcagacagatttcaggcagaatagcacag
ggaagagacagctacagatcacagtcttagagctgttcgtcttgccattg
gtggagtagcatggtggtggaggaaccttgtgtcaagtctgtttcttcat
gattgaaccgaagagcagaggggcgaaataggacccatgggtaggttatg
gtctagaatctgttcatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100868480_100869582
seq2: B6Ng01-105B15.b_46_1121

seq1  GAATTCCAGGACAATCAGAACTACACAAAGAAACTCTGTCTCAAACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAATCAGAACTACACAAAGAAACTCTGTCTCAAACAACA  50

seq1  ACAAAAAACAACAACACCCAACAAACCAAACAAAAAATTGCATTGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAACAACACCCAACAAACCAAACAAAAAATTGCATTGTTGTT  100

seq1  GTCAGTGTACACTAATACAACTCTAAAAGTATCCCTACGAGACATTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTACACTAATACAACTCTAAAAGTATCCCTACGAGACATTCATA  150

seq1  GCAGTGTAGGCTACACATTCCTCCTTTCTAGCAAACTCTAATTACTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTAGGCTACACATTCCTCCTTTCTAGCAAACTCTAATTACTCTTT  200

seq1  CAGGACTCATTTTGAATGGTTTCTATAGATTACCTCCTATGATTCCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCATTTTGAATGGTTTCTATAGATTACCTCCTATGATTCCCTTG  250

seq1  ACCACTCTCTGGTGTAGGTGATATAGTATGTATTTCACAGATGAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTCTGGTGTAGGTGATATAGTATGTATTTCACAGATGAGAGAAA  300

seq1  TGATAGCTTGAAAGGTTAAATAGCACTGCTCCAAATTTATAATTGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCTTGAAAGGTTAAATAGCACTGCTCCAAATTTATAATTGTTACA  350

seq1  TCAAGGGTTTGAATGCGTATCTTTCTTATGCTAACATTTCTGTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGTTTGAATGCGTATCTTTCTTATGCTAACATTTCTGTTTTTTTT  400

seq1  TTCTTTTTTTTTTTTTTCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTTTTTTCTTTTCGAGACAGGGTTTCTCTGTATAGCCCTG  450

seq1  GCTGTCCTGAAACTCTCTCTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGAAACTCTCTCTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  500

seq1  CCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAC  550

seq1  GCCCGGCTAACATTTCTGTTTTTGCAGAGTACTAGCATAAATTTGCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGCTAACATTTCTGTTTTTGCAGAGTACTAGCATAAATTTGCTGCC  600

seq1  TTAGTCTGATTACAAATTCTTCCTTAGTATAGACTAAAGTGTGATAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTGATTACAAATTCTTCCTTAGTATAGACTAAAGTGTGATAGACA  650

seq1  CCTTTTCTGAGTTTATGATGCAGACAACAGCAATCTCCTGTAGGTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGAGTTTATGATGCAGACAACAGCAATCTCCTGTAGGTATTAT  700

seq1  ATATTCAAGTGTCTTGGAGATAGCACTGTGGATCTAGAACATAACTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGTGTCTTGGAGATAGCACTGTGGATCTAGAACATAACTTGAG  750

seq1  ACTGTCCAGTCCTAAGCTCTGGACTCAGGAAATGCTCTCATTTTCGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAGTCCTAAGCTCTGGACTCAGGAAATGCTCTCATTTTCGTTTA  800

seq1  TTATTTGTCTGGAAGATGTGTGAAGCAACCTTGCTTCTGAGGGAAAACTA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTATTTGTCTGGAAGATGTGTGAAGCAACCTTGCTTCTGAGGG-AAACTA  849

seq1  TTTTACCTCAGAGTACAGTTTTACTAAGTGACTTCCTACTTTTACCACAC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTACCTCAGAGTACAGTTTTACTAAGTGACTTCCTAC-TTTACCACAC  898

seq1  AATTGTTTCATAGGAGATTCTCAAAGAGATACGTTCTCTGGACCAAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTCATAGGAGATTCTCAAAGAGATACGTTCTCTGGACCAAATCA  948

seq1  CCCAGAAGAACTCATTCCGCCAAACCAAGAGAAAAGAAATGAAGCTAAAA  1000
      |||||||| ||||||||||||||||| |||||||   |||| ||||||| 
seq2  CCCAGAAG-ACTCATTCCGCCAAACC-AGAGAAA--GAATG-AGCTAAA-  992

seq1  CCAAAGCTCATCTTGTAAACACCTCTGTTTCGTCCCATCCTGAGAACTAA  1050
         ||||||||||||| |||||||||| ||||| |||| ||||| ||| |
seq2  --CAAGCTCATCTTGT-AACACCTCTG-TTCGT-CCAT-CTGAG-ACT-A  1034

seq1  TGCTTTAACATGTTGCTTAGTATTTTCAGCAGGAAACTTTGGTCTACAAG  1100
      |||||| ||||| ||| |||   |||||||||   ||||  |||||| ||
seq2  TGCTTT-ACATG-TGC-TAG--ATTTCAGCAG---ACTT--GTCTAC-AG  1073

seq1  AGC  1103
      |||
seq2  AGC  1076

seq1: chr14_100886093_100887277
seq2: B6Ng01-105B15.g_67_1236 (reverse)

seq1  GCCATTTGGAACAGATCTTCGAGCATTAAACCTACCACTGGGTCCTATTC  50
      |||||   ||||||||  | || |||  ||||||||  ||||||||||| 
seq2  GCCAT---GAACAGATTCTAGACCAT--AACCTACCCATGGGTCCTATTT  45

seq1  TGCTCCCTCTGCTC-TCTGTTCCATCATGATGTAAACAGACTCTGACACA  99
       || |||||||||| || |||| ||||||| | ||||||||| |||||||
seq2  CGC-CCCTCTGCTCTTCGGTTCAATCATGAAG-AAACAGACT-TGACACA  92

seq1  GGTTCCCTCCACCACCATGCTACTCCA-CAATGGC-AGACCGACAGGCTC  147
       | | |||||||||||||||||||||| ||||||| ||||  ||| ||||
seq2  AGGTTCCTCCACCACCATGCTACTCCACCAATGGCAAGACGAACA-GCTC  141

seq1  TAAGACTGTGATTCCTTGTAGCTGTCTCCTTCCCTGTGCTATTTCTGCCC  197
      ||||||||||||    ||||||||||| ||||||||||||| ||||| ||
seq2  TAAGACTGTGAT---CTGTAGCTGTCT-CTTCCCTGTGCTA-TTCTG-CC  185

seq1  TGAAATCTGTCTGCCACAGTAACCAAGAAGAATGGACCCACAGGTTGCAG  247
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAAATCTGTCTGCCACAGTAACCAAGAAGAATGGACCCACAGG-TGCAG  234

seq1  AATGCCCCCTGGAAGATCATGAAATTCTTAACGAGTGACTGACTATCTTT  297
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATG-CCCCTGGAAGATCATGAAATTCTTAACGAGTGACTGACTATCTTT  283

seq1  TGTAGACAGCTGGAGATGTCCAAAGAGAAAGAAGAAAGTAAGGGGGCAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACAGCTGGAGATGTCCAAAGAGAAAGAAGAAAGTAAGGGGGCAAT  333

seq1  GATATTCAGTGGGAGTCAGAAAGCTCATGGGAAGATGAGAGGCTTGTTGT  397
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GATATTCAGTGGGAGTCAGAAAGCTCAT-GGAAGATGAGAGGCTTGTTGT  382

seq1  CTGTTCTCACTTAAAATTCCTATGTGTTTATAACCTTTACCTTCTAAGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTCACTTAAAATTCCTATGTGTTTATAACCTTTACCTTCTAAGAC  432

seq1  TCCTAAAAAATATCCAGGAACTTGTTCCTGGAGGAGGTAGAGTCTCTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAAATATCCAGGAACTTGTTCCTGGAGGAGGTAGAGTCTCTAAG  482

seq1  AATGGTACCATAAGACACAATGAATTCTCACGTTTGGGAGTAATTCTGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACCATAAGACACAATGAATTCTCACGTTTGGGAGTAATTCTGAT  532

seq1  ACCAGGCTTGGTACATGAGTGAGTCAGGTACAGTGAATCGTTCAAAATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTTGGTACATGAGTGAGTCAGGTACAGTGAATCGTTCAAAATGA  582

seq1  GGTTAACTATATTCGATGTAATTAACTGTATCATCAATGAGAAAGCATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAACTATATTCGATGTAATTAACTGTATCATCAATGAGAAAGCATTT  632

seq1  GTGTGCATTGTAATCAAATATAATTATTATGAAAGTATAAAGATGATTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCATTGTAATCAAATATAATTATTATGAAAGTATAAAGATGATTAG  682

seq1  AAACTACTACAAGTTATCATAAATAAATTATTTCATAAAGGAGGAAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACTACAAGTTATCATAAATAAATTATTTCATAAAGGAGGAAAAAT  732

seq1  TGAGGTTCAGGAAGCGATGACTACTTGCAAAAATGAAAGGAAAAATTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCAGGAAGCGATGACTACTTGCAAAAATGAAAGGAAAAATTAGT  782

seq1  TATTTAATGGTAACACCTGAAACCCAATATATGCCAAAGAACCTTTGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGGTAACACCTGAAACCCAATATATGCCAAAGAACCTTTGCTG  832

seq1  AAATAAGGTCAGAAGTTCCATTACTAGATTCTATGGCAGAGATGCCCATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGTCAGAAGTTCCATTACTAGATTCTATGGCAGAGATGCCCATG  882

seq1  AGGTGAAGGCTCCAGAGCCAGGTTCCAGGAATGTGGTTCAGATCTGAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGGCTCCAGAGCCAGGTTCCAGGAATGTGGTTCAGATCTGAAGC  932

seq1  TCTCACATTGGTAGCTAGTGTGGTTTTAGCTCCAGTGATAGCTAGTATTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATTGGTAGCTAGTGTGGTTTTAGCTCCAGTGATAGCTAGTATTG  982

seq1  AACGGTTCTAGTCTCCAAGTACTGACTTTTCCCGTGACAAAGAACATATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTTCTAGTCTCCAAGTACTGACTTTTCCCGTGACAAAGAACATATA  1032

seq1  TGCTCTAAGTACCCTGAAAGAAAGAGGTCAAGGAAAACCAATAAATAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGTACCCTGAAAGAAAGAGGTCAAGGAAAACCAATAAATAATA  1082

seq1  CGATAAAGAGGGCAACGTCCTCCCAAGGGCGTATGAAGAACCAAGATGCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAAAGAGGGCAACGTCCTCCCAAGGGCGTATGAAGAACCAAGATGCT  1132

seq1  GGTTATTTTTATGTGCTAATTTGGCTGAGGGAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTTATGTGCTAATTTGGCTGAGGGAGAATTC  1170