BAC Information

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BAC

Clone NameB6Ng01-105H02
Chromosome14 (Build37)
Map Location 119,096,354 - 119,263,690
singlet/doubletdoublet
Overlap geneAbcc4, Cldn10
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneDzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324, LOC100043830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105H02.bB6Ng01-105H02.g
ACCDH913464DH913465
length1,0941,198
definitionDH913464|Mus musculus domesticus DNA, BAC clone: B6Ng01-105H02, 5' end.DH913465|Mus musculus domesticus DNA, BAC clone: B6Ng01-105H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,262,590 - 119,263,690)(119,096,354 - 119,097,561)
sequence
gaattcaacagcatcaacaaaacaacaagaagaaagcggaaaacatgttt
caaggcctgaacgatcttcattttaggattcgggcacaagagtgcgattc
aaaccaaagcttgtggcaaacagcagcctttcagtgctttgctaaggacc
cagatatgtgggctcatgccactgacagtcacaccttctgaggccaccac
cagggagaagacacttagaagtaacttggtatagcctaatgtgtgccatt
tgtgggaaaaggaacagatccttccgcaaagcctcctcagactgtcaaca
tagcaggaagctttgcacaggtctggaaggaccagattctctacagttac
agagtcacttgggggcactctggtaggtagacagaactgaaggagatgct
ttctgacctcaagaaagttacagagtcctcatgccggtctagcaagacat
caaagaaacatctagaaccctcttccagcaccttctccaaacctctgctc
acctggcttggcagagtcatgaattgagtctcacacatgttcaagctcaa
atgaatttgaaatcagacagcagttattaaattctagcaaagccagtcga
gaacacgctcttctacaaataagcctggccaaagatttgctttaacgatg
acttctcaagatctgtagagccaggttaaccctgtactggaagccaatgc
agatgtagcgtcaggttttctggtttctattgcccaccctctccaagaag
gtgctaatttagaaagtaaaacatcagatgaaaccactgctatcgatgga
tcggtttgaaggagcccttggtttacctgaagcctgggttcctgccatgc
ctctctaactagaatgcaagaggacattgaccaccctccagtctaatcat
tccctgatccaaccagagtttattgagattgtgaagtcttcaatcatcac
ctccgagtttggtttcctgtacatctgtacaatctagttttcaaaataaa
cagaagctgagcttattcatcttgcattcagatgctgaggcaaaagttca
tatccatgtctagctgggctaccagccagactgtatctctaaaa
gaattcaaggtcagtctgatctccacagtgagtgacttccgggataggca
gggctgtgctcagagacccactagtgaaaatgaatgaatgattgaatgaa
tgaatgaaaataaataaataagtaaataaatagatatcacttgaattttt
ttctttagatttatttattattaattctaagtactctgtagctgtcttca
gacacagcagaagagggcgtcagaccttattacggatggttgtaagccac
catgtggtatctgggatttgaactcaggacctttggaagagcagtcagtg
ctcttaatcgccgagccatctctccagccccctcacttgaattctaatat
acaaacaaacaaacaaacaaaaaccagggcaggagagatggcccagcagt
ggggagtctgtgctgctctcacagaggacaggaattgaggggcccagcag
gaatccacacccctggcttcccaggcacctgcacacaagtgcatatatct
attcacagaagcacctaagtacaaataattttaaaaagaaaaaaatgcag
ggtgttggtggtacacacctttaatcccagaactccggaggtagaggcaa
gtgaatctctgagtttgattccggcctggtcttcacagtgagtcccagga
cagccacagctacacagagaaaccctgtctcaaaaaagcaaaagcaaaac
caaaaacacacaaacaaaaataataataataaaaaacaaatcttttaaca
cacaaaagtcaaacaggatgcacgccttgcatacagccttgtgcacacgg
gctggctggtgaagagtccttgaagaggcgacattaacagggctggccag
ttggatcccactcacatcctgactaaactgacactccatacagacctaca
gactaagagcattgtattccacgagcaatttatgctcgttttacatagga
aatgtatatatttttgcaatagtggcacttctctccaccaaggtcctcta
actttggttctcctatccatttactgccaccatcacgtatgaacagaaaa
cagctaggagatgatcacagaaacacagaatttcggcaagctcttccggt
tagtacccgacactagctcagccttcacttgcccaacgggatgtttcctg
gctctcagcctcttcctcatgtgcggaggtagccatctcctacaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_119262590_119263690
seq2: B6Ng01-105H02.b_45_1138 (reverse)

seq1  TTTTTGAGATACAGTCTTGCTGGGTAGCCCAGGCTAGACATGAATTATGA  50
      |||| |||||||||||| ||| ||||||||| |||||||||| | |||||
seq2  TTTTAGAGATACAGTCTGGCT-GGTAGCCCA-GCTAGACATGGA-TATGA  47

seq1  ACTTTTTGCCTCAGCATCCTGAATGCAAGGATG-ATAGGCTCAGCTTCTT  99
      || |||||||||||||| |||||||||| |||| ||| |||||||||| |
seq2  AC-TTTTGCCTCAGCAT-CTGAATGCAA-GATGAATAAGCTCAGCTTC-T  93

seq1  GTTTATTTTTGAAAACTAGATTTGTACAGATGTACAGGAAACCAAACTCG  149
      ||||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTTA-TTTTGAAAACTAGA-TTGTACAGATGTACAGGAAACCAAACTCG  141

seq1  GAGGTGATGATTG-AGACTTCACAATCTCAATAAACTCTGGTTGGATCAG  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATGATTGAAGACTTCACAATCTCAATAAACTCTGGTTGGATCAG  191

seq1  GGAATGATTAGACTGGAGGGTGGTCAATGTCCTCTTGCATTCTAGTTAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATTAGACTGGAGGGTGGTCAATGTCCTCTTGCATTCTAGTTAGA  241

seq1  GAGGCATGGCAGGAACCCAGGCTTCAGGTAAACCAAGGGCTCCTTCAAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGGCAGGAACCCAGGCTTCAGGTAAACCAAGGGCTCCTTCAAAC  291

seq1  CGATCCATCGATAGCAGTGGTTTCATCTGATGTTTTACTTTCTAAATTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCATCGATAGCAGTGGTTTCATCTGATGTTTTACTTTCTAAATTAG  341

seq1  CACCTTCTTGGAGAGGGTGGGCAATAGAAACCAGAAAACCTGACGCTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTTGGAGAGGGTGGGCAATAGAAACCAGAAAACCTGACGCTACA  391

seq1  TCTGCATTGGCTTCCAGTACAGGGTTAACCTGGCTCTACAGATCTTGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTGGCTTCCAGTACAGGGTTAACCTGGCTCTACAGATCTTGAGA  441

seq1  AGTCATCGTTAAAGCAAATCTTTGGCCAGGCTTATTTGTAGAAGAGCGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCGTTAAAGCAAATCTTTGGCCAGGCTTATTTGTAGAAGAGCGTG  491

seq1  TTCTCGACTGGCTTTGCTAGAATTTAATAACTGCTGTCTGATTTCAAATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGACTGGCTTTGCTAGAATTTAATAACTGCTGTCTGATTTCAAATT  541

seq1  CATTTGAGCTTGAACATGTGTGAGACTCAATTCATGACTCTGCCAAGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGCTTGAACATGTGTGAGACTCAATTCATGACTCTGCCAAGCCA  591

seq1  GGTGAGCAGAGGTTTGGAGAAGGTGCTGGAAGAGGGTTCTAGATGTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAGAGGTTTGGAGAAGGTGCTGGAAGAGGGTTCTAGATGTTTCT  641

seq1  TTGATGTCTTGCTAGACCGGCATGAGGACTCTGTAACTTTCTTGAGGTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCTTGCTAGACCGGCATGAGGACTCTGTAACTTTCTTGAGGTCA  691

seq1  GAAAGCATCTCCTTCAGTTCTGTCTACCTACCAGAGTGCCCCCAAGTGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATCTCCTTCAGTTCTGTCTACCTACCAGAGTGCCCCCAAGTGAC  741

seq1  TCTGTAACTGTAGAGAATCTGGTCCTTCCAGACCTGTGCAAAGCTTCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACTGTAGAGAATCTGGTCCTTCCAGACCTGTGCAAAGCTTCCTG  791

seq1  CTATGTTGACAGTCTGAGGAGGCTTTGCGGAAGGATCTGTTCCTTTTCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGACAGTCTGAGGAGGCTTTGCGGAAGGATCTGTTCCTTTTCCC  841

seq1  ACAAATGGCACACATTAGGCTATACCAAGTTACTTCTAAGTGTCTTCTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGCACACATTAGGCTATACCAAGTTACTTCTAAGTGTCTTCTCC  891

seq1  CTGGTGGTGGCCTCAGAAGGTGTGACTGTCAGTGGCATGAGCCCACATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTGGCCTCAGAAGGTGTGACTGTCAGTGGCATGAGCCCACATAT  941

seq1  CTGGGTCCTTAGCAAAGCACTGAAAGGCTGCTGTTTGCCACAAGCTTTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTTAGCAAAGCACTGAAAGGCTGCTGTTTGCCACAAGCTTTGG  991

seq1  TTTGAATCGCACTCTTGTGCCCGAATCCTAAAATGAAGATCGTTCAGGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCGCACTCTTGTGCCCGAATCCTAAAATGAAGATCGTTCAGGCC  1041

seq1  TTGAAACATGTTTTCCGCTTTCTTCTTGTTGTTTTGTTGATGCTGTTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATGTTTTCCGCTTTCTTCTTGTTGTTTTGTTGATGCTGTTGAA  1091

seq1  TTC  1101
      |||
seq2  TTC  1094

seq1: chr14_119096354_119097561
seq2: B6Ng01-105H02.g_69_1266

seq1  GAATTCAAGGTCAGTCTGATCTCCACAGTGAGTGACTTCCGGGATAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCAGTCTGATCTCCACAGTGAGTGACTTCCGGGATAGGCA  50

seq1  GGGCTGTGCTCAGAGACCCACTAGTGAAAATGAATGAATGATTGAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCTCAGAGACCCACTAGTGAAAATGAATGAATGATTGAATGAA  100

seq1  TGAATGAAAATAAATAAATAAGTAAATAAATAGATATCACTTGAATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAAAATAAATAAATAAGTAAATAAATAGATATCACTTGAATTTTT  150

seq1  TTCTTTAGATTTATTTATTATTAATTCTAAGTACTCTGTAGCTGTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGATTTATTTATTATTAATTCTAAGTACTCTGTAGCTGTCTTCA  200

seq1  GACACAGCAGAAGAGGGCGTCAGACCTTATTACGGATGGTTGTAAGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCAGAAGAGGGCGTCAGACCTTATTACGGATGGTTGTAAGCCAC  250

seq1  CATGTGGTATCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTATCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTG  300

seq1  CTCTTAATCGCCGAGCCATCTCTCCAGCCCCCTCACTTGAATTCTAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATCGCCGAGCCATCTCTCCAGCCCCCTCACTTGAATTCTAATAT  350

seq1  ACAAACAAACAAACAAACAAAAACCAGGGCAGGAGAGATGGCCCAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAAAACCAGGGCAGGAGAGATGGCCCAGCAGT  400

seq1  GGGGAGTCTGTGCTGCTCTCACAGAGGACAGGAATTGAGGGGCCCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTCTGTGCTGCTCTCACAGAGGACAGGAATTGAGGGGCCCAGCAG  450

seq1  GAATCCACACCCCTGGCTTCCCAGGCACCTGCACACAAGTGCATATATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCACACCCCTGGCTTCCCAGGCACCTGCACACAAGTGCATATATCT  500

seq1  ATTCACAGAAGCACCTAAGTACAAATAATTTTAAAAAGAAAAAAATGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGAAGCACCTAAGTACAAATAATTTTAAAAAGAAAAAAATGCAG  550

seq1  GGTGTTGGTGGTACACACCTTTAATCCCAGAACTCCGGAGGTAGAGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGGTGGTACACACCTTTAATCCCAGAACTCCGGAGGTAGAGGCAA  600

seq1  GTGAATCTCTGAGTTTGATTCCGGCCTGGTCTTCACAGTGAGTCCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTCTGAGTTTGATTCCGGCCTGGTCTTCACAGTGAGTCCCAGGA  650

seq1  CAGCCACAGCTACACAGAGAAACCCTGTCTCAAAAAAGCAAAAGCAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGCTACACAGAGAAACCCTGTCTCAAAAAAGCAAAAGCAAAAC  700

seq1  CAAAAACACACAAACAAAAATAATAATAATAAAAAACAAATCTTTTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACACACAAACAAAAATAATAATAATAAAAAACAAATCTTTTAACA  750

seq1  CACAAAAGTCAAACAGGATGCACGCCTTGCATACAGCCTTGTGCACACGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGTCAAACAGGATGCACGCCTTGCATACAGCCTTGTGCACACGG  800

seq1  GCTGGCTGGTGAAGAGTCCTTGAAGAGGCGACATTAACAGGGCTGGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGGTGAAGAGTCCTTGAAGAGGCGACATTAACAGGGCTGGCCAG  850

seq1  TTGGATCCCACTCACATCCTGACT-AACTGACACTCCATACAGACCTACA  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGGATCCCACTCACATCCTGACTAAACTGACACTCCATACAGACCTACA  900

seq1  GACTAAGAGCAATGTATTCCACGAGCAATTTTATGCTCGTTTTACATAGG  949
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  GACTAAGAGCATTGTATTCCACGAGCAA-TTTATGCTCGTTTTACATAGG  949

seq1  AAAATGTATATATTTTTGC-ATAGCTGGCACTTCCTCTCCACCAAGGTCC  998
       |||||||||||||||||| |||| |||||||| |||||||||||||| |
seq2  -AAATGTATATATTTTTGCAATAG-TGGCACTT-CTCTCCACCAAGGT-C  995

seq1  CTCTAACTTTGG-TCT-CTATCCATTTACTGCCACCATCACGTAGAAACA  1046
      |||||||||||| ||| |||||||||||||||||||||||||||  ||||
seq2  CTCTAACTTTGGTTCTCCTATCCATTTACTGCCACCATCACGTATGAACA  1045

seq1  GGAAAACAGGCTAAGGAGATGATCACAGAAACACAG-ATTCCGGTGCATG  1095
       ||||||| ||| ||||||||||||||||||||||| ||| ||  ||| |
seq2  -GAAAACA-GCT-AGGAGATGATCACAGAAACACAGAATTTCG--GCAAG  1090

seq1  CTC-TCCGGTTAGTACCCCGACTC-AGCTCCCAG-CTTCATCTTGCCC-A  1141
      ||| ||||||||||| |||||| | ||||  ||| ||||| ||||||| |
seq2  CTCTTCCGGTTAGTA-CCCGACACTAGCT--CAGCCTTCA-CTTGCCCAA  1136

seq1  CCGGATGTTTCCTGGTCTCTCCAGCCTCCCTTTCCTCACTGTGCGGAAG-  1190
      | ||||||||||||| |||| |||||||   ||||||| |||||||| | 
seq2  CGGGATGTTTCCTGG-CTCT-CAGCCTC---TTCCTCA-TGTGCGGAGGT  1180

seq1  AGCCATTCTCC-ACAAAAT  1208
      ||||| ||||| |||||||
seq2  AGCCA-TCTCCTACAAAAT  1198