BAC Information

Click to search

BAC

Clone NameB6Ng01-105I24
Chromosome14 (Build37)
Map Location 42,992,001 - 43,157,226
singlet/doubletdoublet
Overlap geneLOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298
Upstream geneSftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759
Downstream geneLOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105I24.bB6Ng01-105I24.g
ACCDH913550DH913551
length6591,077
definitionDH913550|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I24, 5' end.DH913551|Mus musculus domesticus DNA, BAC clone: B6Ng01-105I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,156,674 - 43,157,226)(42,992,001 - 42,993,084)
sequence
gaattcccagcaccatgtctgcccatatgatgccatgcttttgccaagac
aaaaatgtactaaatttttaaaaatataagcccagtttcaacctcccaca
tccaatgctacattttcctaccctctaagtagtgtagctgcatttccatc
caggtcaataccagacagtgggcttatggcaaatatagtctaacatctct
gcatttggtctgcccagtggcttttccacacctttactgcagggcaaaaa
agcaaaaccaaactaagagaaggaggtagtatgggggtgggataactgac
tgaagacttttgaaagggtacatggaaaccaacaattgtagaaccattat
aatacacaaatccatataaaggactttaaattgaattaatctcttatgct
gacaatgcctcccctaaatcccataaactatcaaatgaaaaacccagggg
cagttttaggttattttgttttgggttgttcatcatggaagtctaatacc
cactcaggaaacattaaaggccattgggattgctcttggatactttccag
aagtcaatagtaagatcacattgctgaagatggtaattggcacatccatc
aggtcagacgtctgtcacattagtgtgtctgtgtgtgtctgtgtgtgtgt
gtgtgtgtg
gaattcatgtagcaatatgaacaaaggattatccctgccttaaaactaag
aggaaaaaaaaagccttaaaactgaggaccaaagcctgtgggacagtcta
gtagaaacatttcacagaactagtgtattcctttgggctcacctaagagt
tcttgagggtcaactatctccatttggtcccctcgctctgctgtcctctg
cccaagataataagtttaatcagtaccaataggacccagttggaaggagc
aaggatgagggatacaatttccttgggaattccagatacagcctttttgc
acatgatacttgattgcttagttcagaggatgatttactctttggaccat
gctctaccacaggatgaatattgaattcaccatcattaaatcacaacatg
agaagacaatgttggatatggagaaaatgacgcagtccataagtgatacc
attgagaagtacaaggaattcatagaagataaggattcctacaggtgagt
cccagacacagctgagacccagcactaggcagggaatggttgtggccttc
tgggactttgtacaaaagtaagagctctagttctatactctctgtttctt
aataggagccctcccatgaggcatgggtcttggatttgtacctcttggac
tcagttttcctaagtgtgaatattgtccaagaccctccagtctttattct
tccaaattcaggatcttctgcatcgaaaccatttccaccatgctgggaat
ctcaagcaaccctgaactttctagggttctgacagcagattacaagatct
gggatccatgacaaaaatggaaagagtttataccttttgggtcttctctc
tccctaagagggcattgccctctccctactgatggttttctggtactaca
cacatatgagcaccatgagaagttttcctcttctgtgatgtatatgggac
actctggtgtagggtatcagaaattttttgagtctgttacattgtgctgg
tctctggattgacctgcctctattgtgtactaatggaatatacagggtac
atctagtccgggcttctgggatcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43156674_43157226
seq2: B6Ng01-105I24.b_154_706 (reverse)

seq1  CACACACACACACACACACACACACACACAGACACACTAATGTGACAGAC  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGACACACACAGACACACTAATGTGACAGAC  50

seq1  GTCTGACCTGATGGATGTGCCAATTACCATCTTCAGCAATGTGATCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCTGATGGATGTGCCAATTACCATCTTCAGCAATGTGATCTTAC  100

seq1  TATTGACTTCTGGAAAGTATCCAAGAGCAATCCCAATGGCCTTTAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTCTGGAAAGTATCCAAGAGCAATCCCAATGGCCTTTAATGTT  150

seq1  TCCTGAGTGGGTATTAGACTTCCATGATGAACAACCCAAAACAAAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGGGTATTAGACTTCCATGATGAACAACCCAAAACAAAATAAC  200

seq1  CTAAAACTGCCCCTGGGTTTTTCATTTGATAGTTTATGGGATTTAGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTGCCCCTGGGTTTTTCATTTGATAGTTTATGGGATTTAGGGGA  250

seq1  GGCATTGTCAGCATAAGAGATTAATTCTATTTAAAGTCCTTTATATGGAT  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCATTGTCAGCATAAGAGATTAATTCAATTTAAAGTCCTTTATATGGAT  300

seq1  TTGTGTATTATAATGGTTCTACAATTGTTGGTTTCCATGTACCCTTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTATAATGGTTCTACAATTGTTGGTTTCCATGTACCCTTTCAA  350

seq1  AAGTCTTCAGTCAGTTATCCCACCCCCATACTACCTCCTTCTCTTAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCAGTCAGTTATCCCACCCCCATACTACCTCCTTCTCTTAGTTT  400

seq1  GGTTTTGCTTTTTTGCCCTGCAGTAAAGGTGTGGAAAAGCCACTGGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCTTTTTTGCCCTGCAGTAAAGGTGTGGAAAAGCCACTGGGCAG  450

seq1  ACCAAATGCAGAGATGTTAGACTATATTTGCCATAAGCCCACTGTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGCAGAGATGTTAGACTATATTTGCCATAAGCCCACTGTCTGGT  500

seq1  ATTGACCTGGATGGAAATGCAGCTACACTACTTAGAGGGTAGGAAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTGGATGGAAATGCAGCTACACTACTTAGAGGGTAGGAAAATGT  550

seq1  AGC  553
      |||
seq2  AGC  553

seq1: chr14_42992001_42993084
seq2: B6Ng01-105I24.g_69_1145

seq1  GAATTCATGTAGCAATATGAACAAAGGATTATCCCTGCCTTAAAACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGCAATATGAACAAAGGATTATCCCTGCCTTAAAACTAAG  50

seq1  AGGGAAAAAAAAAAGCCTTAAAACTGAGGACCAAAGCCTGTGGGACAGTC  100
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGG--AAAAAAAAAGCCTTAAAACTGAGGACCAAAGCCTGTGGGACAGTC  98

seq1  TAGTAGAAACATTTCACAGAACTAGTGTATTCCTTTAGGCTCATCTAAGA  150
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TAGTAGAAACATTTCACAGAACTAGTGTATTCCTTTGGGCTCACCTAAGA  148

seq1  GTTCTTGAGGGTCAACTATCTCCATTTGGTCCCCTCGCTCTGCTGTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAGGGTCAACTATCTCCATTTGGTCCCCTCGCTCTGCTGTCCTC  198

seq1  TGCCCAAGATAATAAGTTTAATCAGTACCAATAGGACCCAGTTGGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGATAATAAGTTTAATCAGTACCAATAGGACCCAGTTGGAAGGA  248

seq1  GCAAGGATGTGTCATACAATTTCCTTGGGAATTCCAGATACAGCCTTTTT  300
      ||||||||| |  |||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATGAGGGATACAATTTCCTTGGGAATTCCAGATACAGCCTTTTT  298

seq1  GCACATGATACTTGATTGCTTAGTTCAGAGGATGATTTACTCTTTGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCACATGATACTTGATTGCTTAGTTCAGAGGATGATTTACTCTTTGGACC  348

seq1  ATGCTCTACCACAGGATGAATATTGAATTTACCATCATTAAATCACAACA  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGCTCTACCACAGGATGAATATTGAATTCACCATCATTAAATCACAACA  398

seq1  TGAGAAGACAATGTTGGATATGGAGAAAATGACACAGTCAATAAGTGATA  450
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  TGAGAAGACAATGTTGGATATGGAGAAAATGACGCAGTCCATAAGTGATA  448

seq1  CCATTGAGAAGTACAAGGAATTCATAGAAGATAACGATTCCTACAGGTGA  500
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCATTGAGAAGTACAAGGAATTCATAGAAGATAAGGATTCCTACAGGTGA  498

seq1  GTCCCAGACACAGCTGAGACCCAGCACTAGGCAGGGAATGCTTGTGGCCT  550
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCCCAGACACAGCTGAGACCCAGCACTAGGCAGGGAATGGTTGTGGCCT  548

seq1  TCTGGGACTTTGTACAAAAGTAAAAGCTCTAGTTCTATACTCTCTGTTTC  600
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTGGGACTTTGTACAAAAGTAAGAGCTCTAGTTCTATACTCTCTGTTTC  598

seq1  TTAATAGGAGCCCTCCCTTGAGTCATGGGTCTTGGATTTGTACCTCTTGG  650
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  TTAATAGGAGCCCTCCCATGAGGCATGGGTCTTGGATTTGTACCTCTTGG  648

seq1  ACTCAGTTTTCCTAAGTGTGAATATTGTCCAAGACCCTCCAGTCTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTTTCCTAAGTGTGAATATTGTCCAAGACCCTCCAGTCTTTATT  698

seq1  CTTCCAAATTCAGGATCTTCTGCATCGAAACCATTTCCACCATGCTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAATTCAGGATCTTCTGCATCGAAACCATTTCCACCATGCTGGGA  748

seq1  ATCTCAAGCAACCCTGACC--TCTAGGGTTCTGACAGCAGATTACAAGAT  798
      ||||||||||||||||| |  |||||||||||||||||||||||||||||
seq2  ATCTCAAGCAACCCTGAACTTTCTAGGGTTCTGACAGCAGATTACAAGAT  798

seq1  CTGGGATCCATGACAAAAATGGAAAGAGTTTATACCTTTTGGGTCTTCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCCATGACAAAAATGGAAAGAGTTTATACCTTTTGGGTCTTCTC  848

seq1  TCTCCCTAAGAGGGCATTGCCCTCTCCCTACTGATGGTTTTCTGGTACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAAGAGGGCATTGCCCTCTCCCTACTGATGGTTTTCTGGTACTA  898

seq1  CACACATATGAGCAACCATGAGGAAGTTTTCCTCTTCTGTGATGTATATG  948
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  CACACATATGAGC-ACCATGA-GAAGTTTTCCTCTTCTGTGATGTATATG  946

seq1  GAACACTCTTGGTGTAGGGTTATCAGAAATATTTTGAGACTTGTTACATG  998
      | |||||| |||||||||| |||||||||| ||||||| | |||||||| 
seq2  GGACACTC-TGGTGTAGGG-TATCAGAAATTTTTTGAGTC-TGTTACATT  993

seq1  TGGCTGGTCTCTGGATTTGACCTGCCTCTATTTGGTACTTATGG-ATATA  1047
        ||||||||||||| ||||||||||||||||  ||||| |||| |||||
seq2  GTGCTGGTCTCTGGA-TTGACCTGCCTCTATTGTGTACTAATGGAATATA  1042

seq1  CAGTGGAC-TCTAGTCTCGGGCTTTCTGGGGATCAGAG  1084
      ||| | || ||||||| ||||| |||| ||||||||||
seq2  CAGGGTACATCTAGTC-CGGGC-TTCT-GGGATCAGAG  1077