BAC Information

Click to search

BAC

Clone NameB6Ng01-105P12
Chromosome14 (Build37)14 (Build37)
Map Location 44,105,659 - 44,106,85544,106,850 - 44,108,007
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502
Downstream geneLOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105P12.bB6Ng01-105P12.g
ACCDH913846DH913847
length1,1771,150
definitionDH913846|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P12, 5' end.DH913847|Mus musculus domesticus DNA, BAC clone: B6Ng01-105P12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,105,659 - 44,106,855)(44,106,850 - 44,108,007)
sequence
gaattctttgcatacttctatgactgtgaaagactggggaaattcctagg
aactggagtgtgaagtgagactaagtacaaggtctattggcacagaaatc
aaatattgaaacagcttagaagacagatcaggacaaaatatattgagtcc
agactgatgctgggaggtcaatgaataatccagagaacattgcctcagta
agaaaggagcagggaggagaggtacttgggcaggtcttgaagttagcctt
tgctaaaaatgagtaaaaaataaaattttcacagtcggtgcattcataca
ggaaaggaggagatgactcagtcactaaaggtcctgagaggccacactga
gctggcattcatgaactctccattatttagtaagaacaactgcacttgat
taagatgcttacatgacctttacacccagcacttccctctctgctactat
ctgtcatggtggaggatcttctcagggttgtctcttctgagctgtcagga
cactggcaggttttcctgtcacctgttatggtctcaacaaagtctcctct
caccagccagaaaatctcttcttgacatttgaggctcattgtgaggtaga
aagagaatggaaacaatctacaccattacagatgaggcctttggaaggca
atgtgggttagataatgtcatcagagtaattcttaccttttacaaaagcc
ttctaaacaaatggttccctaggatagtttcctaaccagagagcatgata
gcatgcggcttatgtatttgcaatatgaagtgtgggagacaggctgctga
ttttagatagtcttaagtagaccatgctggccttgtacacaatccactaa
cttggtcaaggttgactttggatcccaatagcaaccctatatatttgaat
atcaataattaagaaccacttcttcatttctaaaagtagtaagtgcttca
agtctaaaataatttacctttaccttctcttaagttagtatgtaagtaat
gatatcattgtgtacaatgatttaattttttcccacagaaaaagatgtgc
tttcttttcttggacctaactggtaaatgaccaatgatggaatcttctgt
cagttcctctctaagaatgctctggatcctgactagtggtggtttctggg
tgaggcctctttatcagttacgaacta
gaattcattcactgtttttttgttttttaacattagaacttcataagttt
taatttttattcaagggaaaacaaaaagttacacaatttgacgtaaaatt
cctcccacatgacacatatcctgtatgtaacactaaactcccagtttagt
gataaattcatattctaagaaattcacaaagatgattttgatttgcaagt
gtggaatatgactgacagtataagtataaaatcactgggtccagccatga
gtcttgaatgctgtgttttcaggtgaagaacattcgacaaaggattcaga
ctttggttcagtttgtaaactttgcacaaattttgttatgatagcctgct
gcccacagaggaaattatccataaaccaaaacaaccttataatttattat
tatttttttgtttatgtttttgttttttttcagagctgaggaaggaaccc
agggccttgcacttgctaggcaagcactctaccactgatctaaatcccca
acccctagtttattattttaatgcaagccattgtaactcttctttgggtc
tgaatttttaatcatctggtatgtaatgtgaaccataaccagggaaagta
cacaatgctaaattaacataaaacataagctgtagcagaagataagaaag
gacaccaagagaggtaaaatctggtacagtctgcttcattgttttggggg
gttgtttttgacattgtccaagtgatttttaatctaaaccatgagatttc
tcatctgcttggtaacagttgttttctaacactataattaaaaatactac
aaagtatagaataaacactcttgtgttataaactatttgccacttactat
tttttgaataaattatttaattaaatgaatacatgacaccaagtgcttgt
tcctgcagctatttattgactattatttttagatagatagcatattaatt
acgagcaataaattgttttaagagcattgctaagtgtgaacagtcataaa
atgggggaggctctccacttgtatcgtcgactaagagcctactgattggt
agtgaaggcttttataagtatacatctataatttgccttgggtatgggat
attaatggaaaccataaaaaatttgctcagaaaccgggtttatttgaaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44105659_44106855
seq2: B6Ng01-105P12.b_48_1224 (reverse)

seq1  TAGTTCCTTAACTTGAT-AAGAGGCCTCAACCAGAAACACACACCTTAGT  49
      ||||| | |||| |||| ||||||||||| ||||||||   |||  ||||
seq2  TAGTT-CGTAAC-TGATAAAGAGGCCTCACCCAGAAACCACCAC--TAGT  46

seq1  CAGGAATCAGGAGCATTTTCTTTAGAGAGGGAACTTTGACAGAAGATTTC  99
      |||| |||  |||||||    ||||||| |||||  |||||||||| |||
seq2  CAGG-ATCCAGAGCATT---CTTAGAGA-GGAAC--TGACAGAAGA-TTC  88

seq1  CATCATTGGTTCCATTTAACCAGTTAGGTCCAAGAAAAAGAAAGCAACAT  149
      ||||||||||  ||||| |||||||||||||||| |||||||||| ||| 
seq2  CATCATTGGT--CATTT-ACCAGTTAGGTCCAAG-AAAAGAAAGC-ACA-  132

seq1  TCTTTTTCTTGGTGGG-AAAAATTAAATCATTGTTACACAATGATATCAT  198
      |||||||||  ||||| |||||||||||||||| ||||||||||||||||
seq2  TCTTTTTCT--GTGGGAAAAAATTAAATCATTG-TACACAATGATATCAT  179

seq1  TACTTACATACTAACTTAAGAGAAGGTAAAGGTAAATTATTTTAGACTTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATACTAACTTAAGAGAAGGTAAAGGTAAATTATTTTAGACTTG  229

seq1  AAGCACTTACTACTTTTAGAAATGAAGAAGTGGTTCTTAATTATTGATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTACTACTTTTAGAAATGAAGAAGTGGTTCTTAATTATTGATAT  279

seq1  TCAAATATATAGGGTTGCTATTGGGATCCAAAGTCAACCTTGACCAAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATATAGGGTTGCTATTGGGATCCAAAGTCAACCTTGACCAAGTT  329

seq1  AGTGGATTGTGTACAAGGCCAGCATGGTCTACTTAAGACTATCTAAAATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATTGTGTACAAGGCCAGCATGGTCTACTTAAGACTATCTAAAATC  379

seq1  AGCAGCCTGTCTCCCACACTTCATATTGCAAATACATAAGCCGCATGCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTGTCTCCCACACTTCATATTGCAAATACATAAGCCGCATGCTA  429

seq1  TCATGCTCTCTGGTTAGGAAACTATCCTAGGGAACCATTTGTTTAGAAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCTCTGGTTAGGAAACTATCCTAGGGAACCATTTGTTTAGAAGG  479

seq1  CTTTTGTAAAAGGTAAGAATTACTCTGATGACATTATCTAACCCACATTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAAAAGGTAAGAATTACTCTGATGACATTATCTAACCCACATTG  529

seq1  CCTTCCAAAGGCCTCATCTGTAATGGTGTAGATTGTTTCCATTCTCTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAAGGCCTCATCTGTAATGGTGTAGATTGTTTCCATTCTCTTTC  579

seq1  TACCTCACAATGAGCCTCAAATGTCAAGAAGAGATTTTCTGGCTGGTGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCACAATGAGCCTCAAATGTCAAGAAGAGATTTTCTGGCTGGTGAG  629

seq1  AGGAGACTTTGTTGAGACCATAACAGGTGACAGGAAAACCTGCCAGTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTTTGTTGAGACCATAACAGGTGACAGGAAAACCTGCCAGTGTC  679

seq1  CTGACAGCTCAGAAGAGACAACCCTGAGAAGATCCTCCACCATGACAGAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCTCAGAAGAGACAACCCTGAGAAGATCCTCCACCATGACAGAT  729

seq1  AGTAGCAGAGAGGGAAGTGCTGGGTGTAAAGGTCATGTAAGCATCTTAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGAGAGGGAAGTGCTGGGTGTAAAGGTCATGTAAGCATCTTAAT  779

seq1  CAAGTGCAGTTGTTCTTACTAAATAATGGAGAGTTCATGAATGCCAGCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGTTGTTCTTACTAAATAATGGAGAGTTCATGAATGCCAGCTC  829

seq1  AGTGTGACCTCTCAGGACCTTTAGTGACTGAGTCATCTCCTCCTTTCCTG  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGCCTCTCAGGACCTTTAGTGACTGAGTCATCTCCTCCTTTCCTG  879

seq1  TATGAATGCACTGACTGTGAAAATTATATTTTTTACTCATTTTTAGCAAA  948
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  TATGAATGCACCGACTGTGAAAATTTTATTTTTTACTCATTTTTAGCAAA  929

seq1  GGCTAACTTCAAGACCTGCCCAAGTACCTCTCCTCCCTGCTCCTTTCTTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTTCAAGACCTGCCCAAGTACCTCTCCTCCCTGCTCCTTTCTTA  979

seq1  CTGAGGCAATGTTCTCTGGATTATTCATTGACCTCCCAGCATCAGTCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAATGTTCTCTGGATTATTCATTGACCTCCCAGCATCAGTCTGG  1029

seq1  ACTCAATATATTTTGTCCTGATCTGTCTTCTAAGCTGTTTCAATATTTGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATATATTTTGTCCTGATCTGTCTTCTAAGCTGTTTCAATATTTGA  1079

seq1  TTTCTGTGCCAATAGACCTTGTACTTAGTCTCACTTCACACTCCAGTTCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGCCAATAGACCTTGTACTTAGTCTCACTTCACACTCCAGTTCC  1129

seq1  TAGGAATTTCCCCAGTCTTTCACAGTCATAGAAGTATGCAAAAGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGAATTTCCCCAGTCTTTCACAGTCATAGAAGTATGC-AAAGAATTC  1177

seq1: chr14_44106850_44108007
seq2: B6Ng01-105P12.g_68_1217

seq1  GAATTCATTCACTGTTTTTTTGTTTTTTAACATTAGAACTTCATAAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACTGTTTTTTTGTTTTTTAACATTAGAACTTCATAAGTTT  50

seq1  TAATTTTTATTCAAGGGAAAACAAAAAGTTACACAATTTGACGTAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTATTCAAGGGAAAACAAAAAGTTACACAATTTGACGTAAAATT  100

seq1  CCTCCCACATGACACATATCCTTTATGTAACACTAAACTCCCAGTTTAGT  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCCCACATGACACATATCCTGTATGTAACACTAAACTCCCAGTTTAGT  150

seq1  GATAAATTCATATTCTAAGAAATTCACAAAGATGATTTTGATTTGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTCATATTCTAAGAAATTCACAAAGATGATTTTGATTTGCAAGT  200

seq1  GTGGAATATGACTGACAGTATAAGTATAAAATCACTGGGTCCAGCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATATGACTGACAGTATAAGTATAAAATCACTGGGTCCAGCCATGA  250

seq1  GTCTTGAATGCTGTGTTTTCAGGTGAAGAACATTCGACAAAGGATTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAATGCTGTGTTTTCAGGTGAAGAACATTCGACAAAGGATTCAGA  300

seq1  CTTTGGTTCAGTTTGTAAACTTTGCACAAATTTTGTTATGATAGCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTCAGTTTGTAAACTTTGCACAAATTTTGTTATGATAGCCTGCT  350

seq1  GCCCACAGAGGAAATTATCCATAAACCAAAACAACCTTATAATTTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGAGGAAATTATCCATAAACCAAAACAACCTTATAATTTATTAT  400

seq1  TATTTTTTTGTTTATGTTTTTGTTTTTTTTCAGAGCTGAGGAAGGAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTGTTTATGTTTTTGTTTTTTTTCAGAGCTGAGGAAGGAACCC  450

seq1  AGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGATCTAAATCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGATCTAAATCCCCA  500

seq1  ACCCCTAGTTTATTATTTTAATGCAAGCCATTGTAACTCTTCTTTGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGTTTATTATTTTAATGCAAGCCATTGTAACTCTTCTTTGGGTC  550

seq1  TGAATTTTTAATCATCTGGTATGTAATGTGAACCATAACCAGGGAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTAATCATCTGGTATGTAATGTGAACCATAACCAGGGAAAGTA  600

seq1  CACAATGCTAAATTAACATAAAACATAAGCTGTAGCAGAAGATAAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCTAAATTAACATAAAACATAAGCTGTAGCAGAAGATAAGAAAG  650

seq1  GACACCAAGAGAGGTAAAATCTGGTACAGTCTGCTTCATTGTTTTGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAAGAGAGGTAAAATCTGGTACAGTCTGCTTCATTGTTTTGGGGG  700

seq1  GTTGTTTTTGACATTGTCCAAGTAATTTTTAATCTAAACCATGAGATTTC  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTTGTTTTTGACATTGTCCAAGTGATTTTTAATCTAAACCATGAGATTTC  750

seq1  TCATCTGCTTGGTAACAGTTGTTTTCTAACACTATAATTAAAAATACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCTTGGTAACAGTTGTTTTCTAACACTATAATTAAAAATACTAC  800

seq1  AAAGTATAGAATAAACACTCTTGTGTTATAAACTATTTGCCACTTACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAGAATAAACACTCTTGTGTTATAAACTATTTGCCACTTACTAT  850

seq1  TTTTTGAATAAATTATTTAATTAAATGAATACATGACACCAAGTGCTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATAAATTATTTAATTAAATGAATACATGACACCAAGTGCTTGT  900

seq1  TCCTGCAGCTATTTATTGACTATTATTTTTAGATAAGATAAGCATATTAA  950
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TCCTGCAGCTATTTATTGACTATTATTTTTAGAT-AGAT-AGCATATTAA  948

seq1  TTACGAGCAAATAAATTGTTTTAAAGAGCATTGCTAAGTGTGAACAGTCA  1000
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TTACGAGC-AATAAATTGTTTT-AAGAGCATTGCTAAGTGTGAACAGTCA  996

seq1  TAAAATGGGGGAGGCTCT-CACTTGTATCGTCGACTAAGAGCCTACTGAT  1049
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAAATGGGGGAGGCTCTCCACTTGTATCGTCGACTAAGAGCCTACTGAT  1046

seq1  TGGTAGTG-ATGCTTTTATAAGTATACAATCTAATAATTTGCTTTGTGTA  1098
      |||||||| | |||||||||||||||| |||| ||||||||| ||| |||
seq2  TGGTAGTGAAGGCTTTTATAAGTATAC-ATCT-ATAATTTGCCTTGGGTA  1094

seq1  TGTGATATATAT-GAAACCATAAATAAAATTTGCTCAGAAACTGGGTTTT  1147
      || |||||  || ||||||||||  ||||||||||||||||| ||| |||
seq2  TGGGATATTAATGGAAACCATAA--AAAATTTGCTCAGAAACCGGG-TTT  1141

seq1  ATTTTAGAAGA  1158
      ||||  |||||
seq2  ATTT--GAAGA  1150