BAC Information

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BAC

Clone NameB6Ng01-106A24
Chromosome14 (Build37)
Map Location 78,479,747 - 78,620,242
singlet/doubletdoublet
Overlap geneAU021034
Upstream geneCcdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1
Downstream geneTnfsf11, LOC219180, Akap11, Dgkh, LOC673649, 1300010F03Rik, LOC629709, LOC100043765, AU017455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106A24.bB6Ng01-106A24.g
ACCDH913907DH913908
length9331,140
definitionDH913907|Mus musculus domesticus DNA, BAC clone: B6Ng01-106A24, 5' end.DH913908|Mus musculus domesticus DNA, BAC clone: B6Ng01-106A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,619,701 - 78,620,242)(78,479,747 - 78,480,902)
sequence
gaattctgaactgttaacaaagatgggagttaagaactgggaagaatctt
caggagcccaatacagtacttatagtgaccatcagaaaacatacccttgt
attccaagcaggaagaaaagagaaggaactgtctgggcatatgtgagaac
gttctgttttgaagaggcttactcccagtagagattattgagcgaaagcc
cactgtgctggagttttatcagaattttaactgtcctggagggagagaca
caacacccgattccagcacacatagccaacctgttccactttgagagctt
aggcaattgaaggacacttgaggattttataacttacaggcataggctca
aaaaaaaaagaaaaaaagaaaaaaaaaaagactaagccatcatttcatga
ccacaaaaagctttgcttgccctcaccacacagcactgccaagtctgttc
atagcagattgtttatgaagtacctgtttggattagatcatgtctggcta
ccaagaaacagattgcaagatgcacttaaggccaaactcagtttgaagag
agagaccaatgcttgaattcagatacagcaagaatgatagggttaacata
attgctatgtaagggctttagtgcatggctagtattcaagaattgaaggc
tggtgggataagagacagacataaaagacacaagtgagtgacagtctctg
catggttctatggacatgaagtcacctaggagaacacaagagaggggtga
tgattgccagggacagtaagagaagagaaatgggaaattatcaatcaatc
aattgatcaatcaatcagtcagttaatatcaaccaatgaacacaaaggct
tcagttaagtatggaaatgttctagagagcagtggaacagcatttaccta
cagtcagcagcaacatgtgcacatttaaaattt
gaattcaaaactagaaacatcccaaatattcattaacagataaagaaaca
cagacacacacacacacacagacacacagacacacacacacacacagaga
gagagagagagagagagagagagagagagaatgaataagacaatgtcaaa
aagcaggaagccattgagcaattctaggattggcacttttatttcaaagc
aattagtaagtttggttttgtgggcataaagtttgatttacacagtcatc
cattaaagaatacacaaataagaacacttgaatattttctaaatggccac
tcaccataaggtacaaggaagtattagaattactactttaagactgcttt
attttattttattttactttactttattttattttatattattttatttt
tgtgaccaccttttcaaaagaactacctggagtctcctaggagtcacatc
aattcccctgaaggtgatgactctcataactcctgtgaggctccacatca
caatatattgcctgtgcctgggatgaactgatcccttggccctgctaagc
actgccaggcctcaccagtagggtagctttctgggacctttgaaatatat
cccaaagctagaagccagtttgactgcagactctttgaaaacttgtatat
tgttcaacaagcaccattgattgactactacggtcatgtgctagcaattt
taggtgaaacggtcccttatctacctgtgttgatggtggtcattgtgaac
cacagcagtatggtctccaaactgtcaaagcggcagagttacctaaaacc
ttcatgtgtcctttctacctcctcgattatctttctcagagtccttttct
gtgagcatctttttttagctcgttaacctacaacatccccccagcttcaa
gtgtggactctagctatgaggggcattatcttctcagaagggggaactgg
aaaaatggactccatgctgatttgcatctgtaaatccatttgtccttgta
tgtgcctatgacattcaccagcccagaaggactgtaaaagctcgtgccaa
aaatcagtgtctgagaatttattatttattaattaataatattaatattg
ggtaataattttgatgcaagtacagcacagacccccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_78619701_78620242
seq2: B6Ng01-106A24.b_46_587 (reverse)

seq1  ACTGAGTTTGGCCTTAAGTGCATCTTGCAATCTGTTTCTTGGTAGCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTTGGCCTTAAGTGCATCTTGCAATCTGTTTCTTGGTAGCCAGA  50

seq1  CATGATCTAATCCAAACAGGTACTTCATAAACAATCTGCTATGAACAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTAATCCAAACAGGTACTTCATAAACAATCTGCTATGAACAGAC  100

seq1  TTGGCAGTGCTGTGTGGTGAGGGCAAGCAAAGCTTTTTGTGGTCATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTGCTGTGTGGTGAGGGCAAGCAAAGCTTTTTGTGGTCATGAAA  150

seq1  TGATGGCTTAGTCTTTTTTTTTTTCTTTTTTTCTTTTTTTTTTGAGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTAGTCTTTTTTTTTTTCTTTTTTTCTTTTTTTTTTGAGCCTA  200

seq1  TGCCTGTAAGTTATAAAATCCTCAAGTGTCCTTCAATTGCCTAAGCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTAAGTTATAAAATCCTCAAGTGTCCTTCAATTGCCTAAGCTCTC  250

seq1  AAAGTGGAACAGGTTGGCTATGTGTGCTGGAATCGGGTGTTGTGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAACAGGTTGGCTATGTGTGCTGGAATCGGGTGTTGTGTCTCTC  300

seq1  CCTCCAGGACAGTTAAAATTCTGATAAAACTCCAGCACAGTGGGCTTTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGACAGTTAAAATTCTGATAAAACTCCAGCACAGTGGGCTTTCG  350

seq1  CTCAATAATCTCTACTGGGAGTAAGCCTCTTCAAAACAGAACGTTCTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAATCTCTACTGGGAGTAAGCCTCTTCAAAACAGAACGTTCTCAC  400

seq1  ATATGCCCAGACAGTTCCTTCTCTTTTCTTCCTGCTTGGAATACAAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCCAGACAGTTCCTTCTCTTTTCTTCCTGCTTGGAATACAAGGGT  450

seq1  ATGTTTTCTGATGGTCACTATAAGTACTGTATTGGGCTCCTGAAGATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTGATGGTCACTATAAGTACTGTATTGGGCTCCTGAAGATTCT  500

seq1  TCCCAGTTCTTAACTCCCATCTTTGTTAACAGTTCAGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTCTTAACTCCCATCTTTGTTAACAGTTCAGAATTC  542

seq1: chr14_78479747_78480902
seq2: B6Ng01-106A24.g_67_1206

seq1  GAATTCAAAACTAGAAACATCCCAAATATTCATTAACAGATAAAGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACTAGAAACATCCCAAATATTCATTAACAGATAAAGAAACA  50

seq1  CAGACACACACACACACACAGACACACAGACACACACACACACACAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACACACACACAGACACACAGACACACACACACACACAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATAAGACAATGTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATAAGACAATGTCAAA  150

seq1  AAGCAGGAAGCCATTGAGCAATTCTAGGATTGGCACTTTTATTTCAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAGCCATTGAGCAATTCTAGGATTGGCACTTTTATTTCAAAGC  200

seq1  AATTAGTAAGTTTGGTTTTGTGGGCATAAAGTTTGATTTACACAGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTAAGTTTGGTTTTGTGGGCATAAAGTTTGATTTACACAGTCATC  250

seq1  CATTAAAGAATACACAAATAAGAACACTTGAATATTTTCTAAATGGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGAATACACAAATAAGAACACTTGAATATTTTCTAAATGGCCAC  300

seq1  TCACCATAAGGTACAAGGAAGTATTAGAATTACTACTTTAAGACTGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATAAGGTACAAGGAAGTATTAGAATTACTACTTTAAGACTGCTTT  350

seq1  ATTTTATTTTATTTTACTTTACTTTATTTTATTTTATATTATTTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTACTTTACTTTATTTTATTTTATATTATTTTATTTT  400

seq1  TGTGACCACCTTTTCAAAAGAACTACCTGGAGTCTCCTAGGAGTCACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCACCTTTTCAAAAGAACTACCTGGAGTCTCCTAGGAGTCACATC  450

seq1  AATTCCCCTGAAGGTGATGACTCTCATAACTCCTGTGAGGCTCCACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCTGAAGGTGATGACTCTCATAACTCCTGTGAGGCTCCACATCA  500

seq1  CAATATATTGCCTGTGCCTGGGATGAACTGATCCCTTGGCCCTGCTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTGCCTGTGCCTGGGATGAACTGATCCCTTGGCCCTGCTAAGC  550

seq1  ACTGCCAGGCCTCACCAGTAGGGTAGCTTTCTGGGACCTTTGAAATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGGCCTCACCAGTAGGGTAGCTTTCTGGGACCTTTGAAATATAT  600

seq1  CCCAAAGCTAGAAGCCAGTTTGACTGCAGACTCTTTGAAAACTTGTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCTAGAAGCCAGTTTGACTGCAGACTCTTTGAAAACTTGTATAT  650

seq1  TGTTCAACAAGCACCATTGATTGACTACTACGGTCATGTGCTAGCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACAAGCACCATTGATTGACTACTACGGTCATGTGCTAGCAATTT  700

seq1  TAGGTGAAACGGTCCCTTATCTACCTGTGTTGATGGTGGTCATTGTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAAACGGTCCCTTATCTACCTGTGTTGATGGTGGTCATTGTGAAC  750

seq1  CACAGCAGTATGGTCTCCAAACTGTCAAAGCGGCAGAGTTACCTAAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGTATGGTCTCCAAACTGTCAAAGCGGCAGAGTTACCTAAAACC  800

seq1  TTCATGTGTCCTTTCTACCTCCTCGATTATCTTTCTCAGAGTCCTTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTCCTTTCTACCTCCTCGATTATCTTTCTCAGAGTCCTTTTCT  850

seq1  GTGAGCATCTTTTTTTTTAGCTCGTTAACCTACCACATCCCCCCAAGCTT  900
      |||||||||  |||||||||||||||||||||| |||||||||| |||||
seq2  GTGAGCATC--TTTTTTTAGCTCGTTAACCTACAACATCCCCCC-AGCTT  897

seq1  CAAGTGTGGGACTCTAGCTATGAGGGGCATTATCTTCTCAGAAGGGGGAA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGT-GGACTCTAGCTATGAGGGGCATTATCTTCTCAGAAGGGGGAA  946

seq1  CTGGAAAGATGGACTCCATGCTGATTTGCATCTGTTAAATCCATTTGTCC  1000
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  CTGGAAAAATGGACTCCATGCTGATTTGCATCTG-TAAATCCATTTGTCC  995

seq1  TTGTTATGTGCCTATGACATTCACCAGCCCAG-AGGACTGTAAAAGCTCG  1049
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTG-TATGTGCCTATGACATTCACCAGCCCAGAAGGACTGTAAAAGCTCG  1044

seq1  TGCCAAAAAATCAGTGTCTGAGATTTTATTTATTTATTTATTTATTTATT  1099
      |||| |||||||||||||||||| |||| ||||||||| ||| ||     
seq2  TGCC-AAAAATCAGTGTCTGAGAATTTA-TTATTTATTAATTAAT---AA  1089

seq1  TATTTATTTATTTGTTTATTTATTTTTGATGCAAGGTTACAGCACAGACC  1149
      |||| |  |||| | | |  || ||||||||||||  |||||||||||||
seq2  TATTAA--TATTGGGTAA--TAATTTTGATGCAAG--TACAGCACAGACC  1133

seq1  CCCACCT  1156
      |||||||
seq2  CCCACCT  1140