BAC Information

Click to search

BAC

Clone NameB6Ng01-106G12
Chromosome14 (Build37)
Map Location 51,142,265 - 51,143,437
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742
Downstream geneOlfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106G12.bB6Ng01-106G12.g
ACCDH914157DH914158
length7851,169
definitionDH914157|Mus musculus domesticus DNA, BAC clone: B6Ng01-106G12, 5' end.DH914158|Mus musculus domesticus DNA, BAC clone: B6Ng01-106G12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaccctaggaataccgaatggcttttgaagcacctgaaaaaat
gttcagcctccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccatctcacaccagtcagaatgactaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagagggacactctgccattgttggt
gggattgcaaacttgtacaaccactctggaaatcagtctggtggttcctc
agaaaattgtacatagtactaccagacgaccccgcaacacctctcctggg
catatacccagaagatgttccaaccggtaagaaggacacatgctcctcca
tgttcatagcagccttatttataatatccagggatccattccataatcag
actccaaacgatgacaccattgcatacactagcaagagtttgctgaaagg
accctgatatagctgtctcttgtgagactaggccagggcctagcaaagac
ataagtggatgctcacagtcagctattcaatggatcacagggccccaatg
gaggagctagacaaagtatccaaggagctaaagagatctgcaaccctgtt
ggtgcaacaacattatgaactaaccagtaccccggagctcttgactctag
ctgcatatgtatcaaatgatgacctagttggccatcactggaatgagagg
tccattggacatgcaaactttatatgccccagtacaggggaacgccaggg
gccaaaaagtgggaatggggtgggtaggggagtgg
gaattcttctcaaatgtgtatttaattgccataatccatgctggggtctc
attttccatgacattactgcttttagatagatgttcttgagagtttaatt
ttataagtacaataaagagcactaagtggactccagctgcttaacaaata
ctatttatctaattctcaaaacaaatgacatgggcaggactgttaccatc
cattttccaacacatgaagaagttgtatcttgtctaacatacacagcaca
aaggctgaccttaaccctgatggtctagctctggaacctgggcatttcca
cacatacatttcgggccaatgaagccatggaatatgctgacatatatatt
gtctgaattggtggaaagttaactagtaaaaatgtaaaacatgacctcta
cttggtttatgagacagctttaacgggaaagaaaataaccataaaaaaca
cctaggacattaaagtatcgtccagaattccacagagccctgacctccta
cttctaaatcccgatttgtgggacacaacagaaagtagtcaataccagaa
ggaacagatcaattcacaacaatatgttagcaaaggagattcatatttaa
gcactaactgacaaagaataagtaacagcagtctagtgaaaacttaactt
ttccttaactcacatataactttattaacattgaaagctttcaaaagttt
cctactttgcaggagactatcttatagcttatccttgggaaactaccctg
agagggagcttcataaaaccacacactgcatgatgttaataaaaactcaa
cagctccaacctcaatacagataagaaataatttatctacatggatgcct
ttagcctagaagcacaaacgcaggttgtctcaaaaagaccattaacactt
gaaatgcttaccattgtattttattgattgcacattaaagaaattgttta
aatttataaatttatcaaacctctgtgaatgtgtgaaagttaaatatctt
tttgtcctcaaggcattataaaagcttgttgtcttggaaagtaagtctga
agaagcaggaaaacagtcttcaggagaggaaactgtaaatttactatgag
ttagtccttggagaaatcaattaacaggcttataaaggggggatcttttt
tattcacctctgaaactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51142265_51143437
seq2: B6Ng01-106G12.g_69_1237

seq1  GAATTCTTCTCAAATGTGTATTTAATTGCCATAATCCATGCTGGGGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAAATGTGTATTTAATTGCCATAATCCATGCTGGGGTCTC  50

seq1  ATTTTCCATGACATTACTGCTTTTAGATAGATGTTCTTGAGAGTTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATGACATTACTGCTTTTAGATAGATGTTCTTGAGAGTTTAATT  100

seq1  TTATAAGTACAATAAAGAGCACTAAGTGGACTCCAGCTGCTTAACAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTACAATAAAGAGCACTAAGTGGACTCCAGCTGCTTAACAAATA  150

seq1  CTATTTATCTAATTCTCAAAACAAATGACATGGGCAGGACTGTTACCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATCTAATTCTCAAAACAAATGACATGGGCAGGACTGTTACCATC  200

seq1  CATTTTCCAACACATGAAGAAGTTGTATCTTGTCTAACATACACAGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCAACACATGAAGAAGTTGTATCTTGTCTAACATACACAGCACA  250

seq1  AAGGCTGACCTTAACCCTGATGGTCTAGCTCTGGAACCTGGGCATTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGACCTTAACCCTGATGGTCTAGCTCTGGAACCTGGGCATTTCCA  300

seq1  CACATACATTTCGGGCCAATGAAGCCATGGAATATGCTGACATATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATTTCGGGCCAATGAAGCCATGGAATATGCTGACATATATATT  350

seq1  GTCTGAATTGGTGGAAAGTTAACTAGTAAAAATGTAAAACATGACCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATTGGTGGAAAGTTAACTAGTAAAAATGTAAAACATGACCTCTA  400

seq1  CTTGGTTTATGAGACAGCTTTAACGGGAAAGAAAATAACCATAAAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTATGAGACAGCTTTAACGGGAAAGAAAATAACCATAAAAAACA  450

seq1  CCTAGGACATTAAAGTATCGTCCAGAATTCCACAGAGCCCTGACCTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACATTAAAGTATCGTCCAGAATTCCACAGAGCCCTGACCTCCTA  500

seq1  CTTCTAAATCCCGATTTGTGGGACACAACAGAAAGTAGTCAATACCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAATCCCGATTTGTGGGACACAACAGAAAGTAGTCAATACCAGAA  550

seq1  GGAACAGATCAATTCACAACAATATGTTAGCAAAGGAGATTCATATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGATCAATTCACAACAATATGTTAGCAAAGGAGATTCATATTTAA  600

seq1  GCACTAACTGACAAAGAATAAGTAACAGCAGTCTAGTGAAAACTTAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAACTGACAAAGAATAAGTAACAGCAGTCTAGTGAAAACTTAACTT  650

seq1  TTCCTTAACTCACATATAACTTTATTAACATTGAAAGCTTTCAAAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAACTCACATATAACTTTATTAACATTGAAAGCTTTCAAAAGTTT  700

seq1  CCTACTTTGCAGGAGACTATCTTATAGCTTATCCTTGGGAAACTACCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTGCAGGAGACTATCTTATAGCTTATCCTTGGGAAACTACCCTG  750

seq1  AGAGGGAGCTTCATAAAACAACACACTGCATGATGTTAATAAAAACTCAA  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGAGGGAGCTTCATAAAACCACACACTGCATGATGTTAATAAAAACTCAA  800

seq1  CAGCTCCAACCTCAATACAGATAAGAAATAATTTAATCTACATGGATGCC  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGCTCCAACCTCAATACAGATAAGAAATAATTT-ATCTACATGGATGCC  849

seq1  TATAGCCTAGAAGCACAAACGCAGGTTG-CTCAAAAAAGACAATT-ACAC  898
      | |||||||||||||||||||||||||| ||| |||||||| ||| ||||
seq2  TTTAGCCTAGAAGCACAAACGCAGGTTGTCTC-AAAAAGACCATTAACAC  898

seq1  TTTGAAATGCTTA-CATTGTATTTTATTGATTGCACATTAAAGAAA-TGT  946
       |||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  -TTGAAATGCTTACCATTGTATTTTATTGATTGCACATTAAAGAAATTGT  947

seq1  ATAAATTTATAAATTTATCAAA-CTCTGTGAA--TGTGGAAGTTAAATAT  993
       ||||||||||||||||||||| |||||||||  |||| |||||||||||
seq2  TTAAATTTATAAATTTATCAAACCTCTGTGAATGTGTGAAAGTTAAATAT  997

seq1  C-TTTTGTCC-CACAGCATTATAAAAGCTTG-TGTCTGGAAAGGTAGGTC  1040
      | |||||||| ||  |||||||||||||||| ||||| | || ||| |||
seq2  CTTTTTGTCCTCAAGGCATTATAAAAGCTTGTTGTCTTGGAAAGTAAGTC  1047

seq1  TG-AGAAGCCAGGAAAACAGTCTTCAGGAGAGGAAACATGTAAATCTACT  1089
      || ||||| |||||||||||||||||||||||||||| ||||||| ||||
seq2  TGAAGAAG-CAGGAAAACAGTCTTCAGGAGAGGAAAC-TGTAAATTTACT  1095

seq1  AAGGAGTTAGTCCTTGAATGATATCAAATTTATCAGGCTTTATAAAAGGT  1139
       | ||||||||||||| | || |||||  ||| ||||| |||| ||||| 
seq2  -ATGAGTTAGTCCTTGGA-GAAATCAA--TTAACAGGC-TTAT-AAAGGG  1139

seq1  GTGATTTCTTTTTTATTCCACCCTCTGAAACTAA  1173
      | ||  ||||||||||||   |||||||||||||
seq2  GGGA--TCTTTTTTATTC--ACCTCTGAAACTAA  1169