BAC Information

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BAC

Clone NameB6Ng01-106L20
Chromosome14 (Build37)
Map Location 12,794,630 - 12,946,446
singlet/doubletdoublet
Overlap genePtprg, LOC100042441
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream gene3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L20.bB6Ng01-106L20.g
ACCDH914393DH914394
length5501,156
definitionDH914393|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L20, 5' end.DH914394|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,794,630 - 12,795,185)(12,945,290 - 12,946,446)
sequence
actgtgctctagtaccttttgagaccagggagtcatgcgtcattggggct
gaatgacataccatacaggttgctggctcagaaaggatagactgggatca
tgaagtccaatgatcctcccctccctcttcttccccagtggcctgcaaac
ccaacgtctggagtctcttgtaagcagtcacagcttacaagagactccag
aagtggtgatgaaggtggctctgtaaggctcataacaagaaccaatcagt
gctccaggagcccgctatagcaccaccttatttactgaaaccactggttt
tgacctgtattataggaatgtgagaaagtgatccacaccttggcaatcat
gaacttgactgaaagaatcaacgaacaaaaacaaaacagcaaaacttaac
gtttgtgtttgaaactcacttttctttccttctcttccttcccatttgac
agttgccatcctgctgaaagacgattattttgtgagtggtgccggactgc
cgggcagattcaaagctgagaaggtggagtttcactggggccacagcaat

gaattcctaaccactcagcttttccaaattggcccttgtgcccctgaaat
cagtgctctctgctagcttcagaaagaacactggaatctgaagttttgaa
gcattaatacatagatggacacttttctcctggggtgtggtgtctgtgtg
tggcggggtgtgtgtgtgatgcaactgcggcctctgtacgatggctagca
aggagccagtgaagccacagaaacaggaacctgtcccttccctgggaata
aacagcaatgtagggtgcagggtctgataaaagtgcagccctctgcaggc
agcttgtaatgaattagaaagcaagtcggggttctttttctctgtttggt
cccttccagggaaggcaaacacctgcattcttctccttgtgtccttgctc
tagagcgctgacaagcacaaaggcatgacaaagcactttctaaaagctcc
agtttccaaatgtcaaaatgcttggaatccacaaacacttctgcagacat
ccactcctcgaaagtgtgtgttttattggagtctattagatagctgtagc
tgccaaaacaacacagtatgttgatggccttcaaatccctgagctcgcca
acgtccacccctcactacaagaagaagaagaaaaaaaaaagtgggcaaat
cttaatttcaatagctcaagcatttaaatatttgaagacagaagcattta
tcttaagtaaaaaaaaaagaacccttttgaaaatcaactacactttttcc
tcaaccctacagaaataaatatttggactaatttctttaaaaacaaaaca
atgttggcttcgccattaggaagaaaaattcgtctctatttcattttctc
ctcacagctggcagatcctgttcaggaaccaaattgctagccctaccttt
tcttgtcagagtgtggattaaaaagaaaaacatgctccaaaggaaaattg
actgctcttcagcagaaaattcagaaatagcctgcaccatgccacctagc
tttgcccagaggataaagggctgccctgcttgtctcttctacagttcctg
cctccatgttacccgagaaagtcaacactggaagtcttggcactactcag
catttcttttgaatttgtttaggatggcctggtgacacaacgcagacttg
gttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12794630_12795185
seq2: B6Ng01-106L20.b_46_601

seq1  GAATTCACTGTGCTCTAGTACCTTTTGAGACCAGGGAGTCATGCGTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGCTCTAGTACCTTTTGAGACCAGGGAGTCATGCGTCATT  50

seq1  GGGGCTGAATGACATACCATACAGGTTGCTGGCTCAGAAAGGATAGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGAATGACATACCATACAGGTTGCTGGCTCAGAAAGGATAGACTG  100

seq1  GGATCATGAAGTCCAATGATCCTCCCCTCCCTCTTCTTCCCCAGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGAAGTCCAATGATCCTCCCCTCCCTCTTCTTCCCCAGTGGCCT  150

seq1  GCAAACCCAACGTCTGGAGTCTCTTGTAAGCAGTCACAGCTTACAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCAACGTCTGGAGTCTCTTGTAAGCAGTCACAGCTTACAAGAGA  200

seq1  CTCCAGAAGTGGTGATGAAGGTGGCTCTGTAAGGCTCATAACAAGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAAGTGGTGATGAAGGTGGCTCTGTAAGGCTCATAACAAGAACCA  250

seq1  ATCAGTGCTCCAGGAGCCCGCTATAGCACCACCTTATTTACTGAAACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCTCCAGGAGCCCGCTATAGCACCACCTTATTTACTGAAACCAC  300

seq1  TGGTTTTGACCTGTATTATAGGAATGTGAGAAAGTGATCCACACCTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGACCTGTATTATAGGAATGTGAGAAAGTGATCCACACCTTGGC  350

seq1  AATCATGAACTTGACTGAAAGAATCAACGAACAAAAACAAAACAGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGAACTTGACTGAAAGAATCAACGAACAAAAACAAAACAGCAAAA  400

seq1  CTTAACGTTTGTGTTTGAAACTCACTTTTCTTTCCTTCTCTTCCTTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACGTTTGTGTTTGAAACTCACTTTTCTTTCCTTCTCTTCCTTCCCA  450

seq1  TTTGACAGTTGCCATCCTGCTGAAAGACGATTATTTTGTGAGTGGTGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAGTTGCCATCCTGCTGAAAGACGATTATTTTGTGAGTGGTGCCG  500

seq1  GACTGCCGGGCAGATTCAAAGCTGAGAAGGTGGAGTTTCACTGGGGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCGGGCAGATTCAAAGCTGAGAAGGTGGAGTTTCACTGGGGCCAC  550

seq1  AGCAAT  556
      ||||||
seq2  AGCAAT  556

seq1: chr14_12945290_12946446
seq2: B6Ng01-106L20.g_68_1223 (reverse)

seq1  GCCAACCAAAGTCTGGCCTTGTGTCACATGCCCATCCTTAAACAAA-TCA  49
      ||||||| |||||| || |||||||||  | |||||| |||||||| |||
seq2  GCCAACC-AAGTCT-GCGTTGTGTCACCAGGCCATCC-TAAACAAATTCA  47

seq1  GAGGAGATGCTGAGTAGTGCCCAAAGACATCCAGTGTTGACCTTTCTCGG  99
       | || |||||||||||||||  ||||| ||||||||||| |||||||||
seq2  AAAGAAATGCTGAGTAGTGCC--AAGACTTCCAGTGTTGA-CTTTCTCGG  94

seq1  GTTACATGGA-GCAGGAACTGTAGAAGGAGACCAGGCAGGGCAGCCCTTT  148
      || ||||||| ||||||||||||||| |||| || |||||||||||||||
seq2  GTAACATGGAGGCAGGAACTGTAGAA-GAGA-CAAGCAGGGCAGCCCTTT  142

seq1  ATCCTCTGGGCAAAGCTAGGTGGCATGGTGCCAGGCTA-TTCTGAATTTT  197
      |||||||||||||||||||||||||||||| ||||||| ||||||| |||
seq2  ATCCTCTGGGCAAAGCTAGGTGGCATGGTG-CAGGCTATTTCTGAA-TTT  190

seq1  TCTGCTG-AGAGCAGTC-ATTTTCCTTT-GAGCATGTTTTTCTTTTTAAT  244
      ||||||| ||||||||| |||||||||| |||||||||||||||||||||
seq2  TCTGCTGAAGAGCAGTCAATTTTCCTTTGGAGCATGTTTTTCTTTTTAAT  240

seq1  TCACACTCTGAC-AGAAAAGGTAGGGCTAGCAATTTGGTTCCTGAACAGG  293
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCACACTCTGACAAGAAAAGGTAGGGCTAGCAATTTGGTTCCTGAACAGG  290

seq1  ATCTGCCAGCTGTGAGGAGAAAATGAAATAGAGACGAA-TTTTCTTCCTA  342
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCTGCCAGCTGTGAGGAGAAAATGAAATAGAGACGAATTTTTCTTCCTA  340

seq1  ATGGCGAAGCCAACATTGTTTTGTTTTTAAAGAAATTAGTCCAAATATTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGAAGCCAACATTGTTTTGTTTTTAAAGAAATTAGTCCAAATATTT  390

seq1  ATTTCTGTAGGGTTGAGGAAAAAGTGTAGTTGATTTTCAAAAGGGTTC-T  441
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTTCTGTAGGGTTGAGGAAAAAGTGTAGTTGATTTTCAAAAGGGTTCTT  440

seq1  TTTTTTTTACTTAAGATAAATGCTTCTGTCTTCAAATATTTAAATGCTTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTACTTAAGATAAATGCTTCTGTCTTCAAATATTTAAATGCTTG  490

seq1  AGCTATTGAAATTAAGATTTGCCCACTTTTTTTTTTCTTCTTCTTCTTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGAAATTAAGATTTGCCCACTTTTTTTTTTCTTCTTCTTCTTGT  540

seq1  AGTGAGGGGTGGACGTTGGCGAGCTCAGGGATTTGAAGGCCATCAACATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGGGTGGACGTTGGCGAGCTCAGGGATTTGAAGGCCATCAACATA  590

seq1  CTGTGTTGTTTTGGCAGCTACAGCTATCTAATAGACTCCAATAAAACACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTTTTGGCAGCTACAGCTATCTAATAGACTCCAATAAAACACA  640

seq1  CACTTTCGAGGAGTGGATGTCTGCAGAAGTGTTTGTGGATTCCAAGCATT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCGAGGAGTGGATGTCTGCAGAAGTGTTTGTGGATTCCAAGCATT  690

seq1  TTGACATTTGGAAACTGGAGCTTTTAGAAAGTGCTTTGTCATGCCTTTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTGGAAACTGGAGCTTTTAGAAAGTGCTTTGTCATGCCTTTGT  740

seq1  GCTTGTCAGCGCTCTAGAGCAAGGACACAAGGAGAAGAATGCAGGTGTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAGCGCTCTAGAGCAAGGACACAAGGAGAAGAATGCAGGTGTTT  790

seq1  GCCTTCCCTGGAAGGGACCAAACAGAGAAAAAGAACCCCGACTTGCTTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCTGGAAGGGACCAAACAGAGAAAAAGAACCCCGACTTGCTTTC  840

seq1  TAATTCATTACAAGCTGCCTGCAGAGGGCTGCACTTTTATCAGACCCTGC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATTACAAGCTGCCTGCAGAGGGCTGCACTTTTATCAGACCCTGC  890

seq1  ACCCTACATTGCTGTTTATTCCCAGGGAAGGGACAGGTTCCTGTTTCTGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACATTGCTGTTTATTCCCAGGGAAGGGACAGGTTCCTGTTTCTGT  940

seq1  GGCTTCACTGGCTCCTTGCTAGCCATCGTACAGAGGCCGCAGTTGCATCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACTGGCTCCTTGCTAGCCATCGTACAGAGGCCGCAGTTGCATCA  990

seq1  CACACACACCCCGCCACACACAGACACCACACCCCAGGAGAAAAGTGTCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCCCGCCACACACAGACACCACACCCCAGGAGAAAAGTGTCC  1040

seq1  ATCTATGTATTAATGCTTCAAAACTTCAGATTCCAGTGTTCTTTCTGAAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTATTAATGCTTCAAAACTTCAGATTCCAGTGTTCTTTCTGAAG  1090

seq1  CTAGCAGAGAGCACTGATTTCAGGGGCACAAGGGCCAATTTGGAAAAGCT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGAGAGCACTGATTTCAGGGGCACAAGGGCCAATTTGGAAAAGCT  1140

seq1  GAGTGGTTAGGAATTC  1157
      ||||||||||||||||
seq2  GAGTGGTTAGGAATTC  1156