BAC Information

Click to search

BAC

Clone NameB6Ng01-106P19
Chromosome14 (Build37)
Map Location 52,625,173 - 52,772,337
singlet/doubletdoublet
Overlap geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1
Upstream geneRnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Downstream geneSupt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106P19.bB6Ng01-106P19.g
ACCDH914575DH914576
length1,121705
definitionDH914575|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P19, 5' end.DH914576|Mus musculus domesticus DNA, BAC clone: B6Ng01-106P19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,625,173 - 52,626,311)(52,771,617 - 52,772,337)
sequence
gaattccattctgggagatcatgagaaatatgttgtaagccactgaagga
gacggggtgggcactgcagactttatatgtaattactgttattatactat
tgttacattaaatatatttactctcactgtgactctgaggagctcgcgca
ggcctctggattaaggtggttgaactgacttcattacttccctataacca
ctaagtaggactcagaagataaaaccaaggtcagaaagtagctgttcctt
cctccccttgctggccccaacactgcaggtctgggtctgagtgtgggaga
atgcctccccctcaggctctgggaagctcaatgaactctgaagtccctcc
tccattctgcacccacttcttgaggcctgagatggtcggatgggtccagc
acaatgcagcacttatctatgatgtcctcgggcctcagtgcaagagaggc
cacggctatttattacaaacgctagctttagggcctcatccagagttact
gaatcaaagatttgcatccttatcgacctcgttgataacgaagtgcccag
gaggagtgaaacacaggcagacacacacagggccttgtgcctcaagacac
ctgtttattggggacatgactcttcaacagggatgacaggaatcgtacca
aaaatagcaacgtctacaagggcccctgatagggctagaagggtacagtg
ccccccacccccaccccttatacaaaaataaactctcatgcctatggacc
agcaggaactggcagagcggctccttaacaggaacacatcctctaccagc
ccgaggaccccgttctttgaccctcacctctgccacttctaaaggcactg
tgactcctctgggctgggtgggtgctgctagcccactctcctccacccac
tgcccactttacctcttggtccaccttgggctgggatacgggtcccacac
tgctccctgctgctgctctacccaactacctctagcacttccccgctctg
cgggtaagcttactaagctaatcactctagaggctccctaccgtcttgcc
ccccagactgccctccgatctagacagccctggctgccctctcttctatg
agactggaggttcctcctgat
gaattccttcctttttttacaatctccatctcctacagtaagtgtgttta
cctgaaaaaaaaaaaaaaacggcccccaccgcgctgggtattaccaaatc
cacagtgacagacaggagtggcaagggatccaaacagggaagagaagcac
tgagctcagttttcatttgcatcaaactaaagaaccactttcatcgccat
ggcaacagacctccatcctcactgatgctcttttcatctaacttgcgttt
ctcaacaggcttcttgaatctcatatgtgtgggcactaggccctttcttg
atagttcccctgctctaacaggtagggctatgcccgctacttacggcttt
aggaaccgtctgagcctggggtgtcactatgatgtcatcgctgtcggtag
tctgtgtttcactgacttcagaagcttgttcacaggattcctggtctgct
agggagaaggctgaaatacacaatgctttcaaaacaggttctccaccatg
ccactggaaagagctggagcccacagcacttccgctgtctgagcactgtt
atctcagtctcgaacgatgtgtttcaaaggttcacttattcagaagtctg
tcatcacagggtacatttcagtggaggggaaggagaaaaggatgaacaga
aaaaaaagagagagatgaagacagtagagggagagagggagatgggaggg
ggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52625173_52626311
seq2: B6Ng01-106P19.b_50_1170

seq1  GAATTCCATTCTGGGAGATCATGAGAAATATGTTGTAAGCCACTGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTGGGAGATCATGAGAAATATGTTGTAAGCCACTGAAGGA  50

seq1  GACGGGGTGGGCACTGCAGACTTTATATGTAATTACTGTTATTATACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGGTGGGCACTGCAGACTTTATATGTAATTACTGTTATTATACTAT  100

seq1  TGTTACATTAAATATATTTACTCTCACTGTGACTCTGAGGAGCTCGCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATTAAATATATTTACTCTCACTGTGACTCTGAGGAGCTCGCGCA  150

seq1  GGCCTCTGGATTAAGGTGGTTGAACTGACTTCATTACTTCCCTATAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGGATTAAGGTGGTTGAACTGACTTCATTACTTCCCTATAACCA  200

seq1  CTAAGTAGGACTCAGAAGATAAAACCAAGGTCAGAAAGTAGCTGTTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTAGGACTCAGAAGATAAAACCAAGGTCAGAAAGTAGCTGTTCCTT  250

seq1  CCTCCCCTTGCTGGCCCCAACACTGCAGGTCTGGGTCTGAGTGTGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTGCTGGCCCCAACACTGCAGGTCTGGGTCTGAGTGTGGGAGA  300

seq1  ATGCCTCCCCCTCAGGCTCTGGGAAGCTCAATGAACTCTGAAGTCCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCCCCTCAGGCTCTGGGAAGCTCAATGAACTCTGAAGTCCCTCC  350

seq1  TCCATTCTGCACCCACTTCTTGAGGCCTGAGATGGTCGGATGGGTCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTGCACCCACTTCTTGAGGCCTGAGATGGTCGGATGGGTCCAGC  400

seq1  ACAATGCAGCACTTATCTATGATGTCCTCGGGCCTCAGTGCAAGAGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGCACTTATCTATGATGTCCTCGGGCCTCAGTGCAAGAGAGGC  450

seq1  CACGGCTATTTATTACAAACGCTAGCTTTAGGGCCTCATCCAGAGTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTATTTATTACAAACGCTAGCTTTAGGGCCTCATCCAGAGTTACT  500

seq1  GAATCAAAGATTTGCATCCTTATCGACCTCGTTGATAACGAAGTGCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAGATTTGCATCCTTATCGACCTCGTTGATAACGAAGTGCCCAG  550

seq1  GAGGAGTGAAACACAGGCAGACACACACAGGGCCTTGTGCCTCAAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTGAAACACAGGCAGACACACACAGGGCCTTGTGCCTCAAGACAC  600

seq1  CTGTTTATTGGGGACATGACTCTTCAACAGGGATGACAGGAATCGTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTGGGGACATGACTCTTCAACAGGGATGACAGGAATCGTACCA  650

seq1  AAAATAGCAACGTCTACAAGGGCCCCTGATAGGGCTAGAAGGGTACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCAACGTCTACAAGGGCCCCTGATAGGGCTAGAAGGGTACAGTG  700

seq1  CCCCCCACCCCCACCCCTTATACAAAAATAAACTCTCATGCCTATGGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCCACCCCTTATACAAAAATAAACTCTCATGCCTATGGACC  750

seq1  AGCAGGAACTGGCAGAGCGGCTCCTTAACAGGAACACATCCTCTACCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAACTGGCAGAGCGGCTCCTTAACAGGAACACATCCTCTACCAGC  800

seq1  CCGAGGACCCCGTTCTTTGACCCTCACCTCTGCCACTTCT-AAGGCACTG  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCGAGGACCCCGTTCTTTGACCCTCACCTCTGCCACTTCTAAAGGCACTG  850

seq1  TGACTCCTCTGGGCTGGGTGGGTGCTGCTAGCCCACTCTCCTCCACCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTCTGGGCTGGGTGGGTGCTGCTAGCCCACTCTCCTCCACCCAC  900

seq1  TGCCCACTTTACCTCTTGGTCCACCTTGGGCTGGGATACGGGTCCCACAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTTTACCTCTTGGTCCACCTTGGGCTGGGATACGGGTCCCACAC  950

seq1  TGCTCCCTGCTGGCTGCTCTACCCAACTACCTCTAGCACTTCCCCGCTCC  999
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TGCTCCCTGCT-GCTGCTCTACCCAACTACCTCTAGCACTTCCCCGCT-C  998

seq1  TGCGGGGTAAGCTTACTAAGCTAATCACTCCTAAGAGGGCTCCCTACCGT  1049
      ||| ||||||||||||||||||||||||||   ||| |||||||||||| 
seq2  TGC-GGGTAAGCTTACTAAGCTAATCACTC--TAGA-GGCTCCCTACCG-  1043

seq1  TCTTGCCCCCCAAGACCTGCCTCTCCGGATCTAGACAGCCCTGGGCTGCC  1099
      ||||||||||| ||| ||||| |||| ||||||||||||||| |||||||
seq2  TCTTGCCCCCC-AGA-CTGCC-CTCC-GATCTAGACAGCCCT-GGCTGCC  1088

seq1  CTCCTCTTCTAGTGGAGGACTGGGAGGGGTCTCTCCTGAT  1139
      || |||||||| ||   |||||   | |||  ||||||||
seq2  CT-CTCTTCTA-TG--AGACTG---GAGGTTCCTCCTGAT  1121

seq1: chr14_52771617_52772337
seq2: B6Ng01-106P19.g_65_769 (reverse)

seq1  TCTCCCCCTCCCTCGCCTCTCCCCCT-CCATCTCCCTCTCTCCCTCTACT  49
                       ||||||||| |||||||||||||||||||||||
seq2  -----------------TCTCCCCCTCCCATCTCCCTCTCTCCCTCTACT  33

seq1  GTCTTCATCTCTCTCTTTTTTTTCTGTTCATCCTTTTCTCCTTCCCCTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATCTCTCTCTTTTTTTTCTGTTCATCCTTTTCTCCTTCCCCTCC  83

seq1  ACTGAAATGTACCCTGTGATGACAGACTTCTGAATAAGTGAACCTTTGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGTACCCTGTGATGACAGACTTCTGAATAAGTGAACCTTTGAA  133

seq1  ACACATCGTTCGAGACTGAGATAACAGTGCTCAGACAGCGGAAGTGCTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCGTTCGAGACTGAGATAACAGTGCTCAGACAGCGGAAGTGCTGT  183

seq1  GGGCTCCAGCTCTTTCCAGTGGCATGGTGGAGAACCTGTTTTGAAAGCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCAGCTCTTTCCAGTGGCATGGTGGAGAACCTGTTTTGAAAGCAT  233

seq1  TGTGTATTTCAGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACAAGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTCAGCCTTCTCCCTAGCAGACCAGGAATCCTGTGAACAAGCT  283

seq1  TCTGAAGTCAGTGAAACACAGACTACCGACAGCGATGACATCATAGTGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCAGTGAAACACAGACTACCGACAGCGATGACATCATAGTGAC  333

seq1  ACCCCAGGCTCAGACGGTTCCTAAAGCCGTAAGTAGCGGGCATAGCCCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGCTCAGACGGTTCCTAAAGCCGTAAGTAGCGGGCATAGCCCTA  383

seq1  CCTGTTAGAGCAGGGGAACTATCAAGAAAGGGCCTAGTGCCCACACATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGAGCAGGGGAACTATCAAGAAAGGGCCTAGTGCCCACACATAT  433

seq1  GAGATTCAAGAAGCCTGTTGAGAAACGCAAGTTAGATGAAAAGAGCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCAAGAAGCCTGTTGAGAAACGCAAGTTAGATGAAAAGAGCATCA  483

seq1  GTGAGGATGGAGGTCTGTTGCCATGGCGATGAAAGTGGTTCTTTAGTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATGGAGGTCTGTTGCCATGGCGATGAAAGTGGTTCTTTAGTTTG  533

seq1  ATGCAAATGAAAACTGAGCTCAGTGCTTCTCTTCCCTGTTTGGATCCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGAAAACTGAGCTCAGTGCTTCTCTTCCCTGTTTGGATCCCTT  583

seq1  GCCACTCCTGTCTGTCACTGTGGATTTGGTAATACCCAGCGCGGTGGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCCTGTCTGTCACTGTGGATTTGGTAATACCCAGCGCGGTGGGGG  633

seq1  CCGTTTTTTTTTTTTTTTCAGGTAAACACACTTACTGTAGGAGATGGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTTTTTTTTTTTTCAGGTAAACACACTTACTGTAGGAGATGGAGA  683

seq1  TTGTAAAAAAAGGAAGGAATTC  721
      ||||||||||||||||||||||
seq2  TTGTAAAAAAAGGAAGGAATTC  705