BAC Information

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BAC

Clone NameB6Ng01-107C20
Chromosome14 (Build37)
Map Location 67,552,238 - 67,661,811
singlet/doubletdoublet
Overlap geneLOC672614, Bnip3l, Ppp2r2a
Upstream geneScara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2
Downstream geneEbf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107C20.bB6Ng01-107C20.g
ACCDH914714DH914715
length1,1971,051
definitionDH914714|Mus musculus domesticus DNA, BAC clone: B6Ng01-107C20, 5' end.DH914715|Mus musculus domesticus DNA, BAC clone: B6Ng01-107C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,552,238 - 67,553,815)(67,660,763 - 67,661,811)
sequence
gaattcttgcctagcacgcacaaggcctgggttctacccctaatacccaa
ataaatatgcacccgatccacctacccatcagccctactactgagtgatg
ccccaaggaaattaaggtggtgccagagaggaaaccgcactccctctcac
tgcactgtgagccacaacactcatgttgtggaaattatctgaatccagtt
gaatggggttgggagatccactctaagtacaggctacaccattgcatgca
ctatgctccctaatcaatagaggagatagcaagctgagcagtcatctctg
tttgcttcctctacagacacaatgacaccagctacctcaagccccactga
catgatgtcccctccatgattgactattgtcccctcaaagcatgatccaa
aatagactcttttgtcagatactttgtcccagtaggaaacgtaagtaatg
ccctggtctcatgtcctttgtggactgcttccattggagcacaggctacc
atccctagccttagtcccctaaggttcaaacatcgccatggtctctaact
agtttccttgcattagaaactatccatgctgtacccacagccttcccctc
tcccgcctccccctctaagtccttacacccatgctttcggctggctttcc
tgggctgactgcttaagacaacaaaggcagctataacttgtccatgtgcg
tcctctgcggtctcaggggggtgtggcacagcaccaggcatggaatgggt
gtgtctcaagaatagaggactgtgtaagggagagccagtgagctagctgg
agagctgaggggtaaactgttcaagctctggcattaacagcacctgcaga
gatgacacaccagggagaagcagaactccccaaatacctagagcaacctc
agcagcccctcaccaggatcctcttctcagatcctttgtattcgtaagcc
aggttgatggatatggtttacacacacacacacacacacacacacacaca
cgagaggtgagcgaaagactattaaataaacatgagttttattctacata
gtaggagcttaatgagcttaatttccatttcagctgatttttgtacagtg
gagggggtggcttagagaatatcggtagaggaggcgaagaagtttctggg
attccaagcaacattcaaccattggtaaccaaggccacaaggctgaa
gaattctggtgttcctgtagaaatgatacagtaatggctttcctatctct
tacctgtctatgttctggtaatttgttttcagtttttggatattgtcctt
agagtattaaactgctttgtaacttttagaaaactggtatgatggcactt
ttatgatagagaccttccttttgatactgagatgttcaatcacacagtac
ctaccctctgccaagttactaaaataacactagttctcagaagtaggatt
aagaattctcttcccttgccgtttatgagacttaagggtacaattaaaga
tgcataacagctggacatggctcagcatgagcttggcctttactttgtat
tttgaagtacagcttgcaggaccctccaacccagatggctagacacactt
cagcagtttatccaagttaggtcttcttccctttatttgtattcatttac
ttgttggttctggggctgaaatgggtcctgtgtgctataaaaaaatgtgc
tctccctctgagctacagtcagtcctaagtgcaacatgaggaggcatctc
tacacatttatttgatctttatgtgctaggattaatttttgtgttttata
tttttcctttgacattactattatcatttgtttgttttttgaggcagggt
ttctctgtatacctctggctgtcctggtactccctctatagagcagggtg
gccttgaattcatagattcttgtgcctcttcctccaaagtgctggggtta
aagatgtgtaccaccaccacctggaattatttattatttttaacagggta
attgtgtaactctgtagcctaggtctcctattgtagaccagactgacctc
accgtacctttatttttgagatggtatttctcacctatagcccatctaga
taggcatttggacccatgagctatttgtctttactccttggcagttttgt
gaatgtgtgtctaggttttcttactctattttcaaacatttattaactcc
ttatgaatatattgcaccatcttttcttgcggaggtgaattaagatgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_67552238_67553815
seq2: B6Ng01-107C20.b_42_1238

seq1  GAATTCTTGCCTAGCACGCACAAGGCCTGGGTTCTACCCCTAATACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTAGCACGCACAAGGCCTGGGTTCTACCCCTAATACCCAA  50

seq1  ATAAATATGCACCCGATCCACCTACCCATCAGCCCTACTACTGAGTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATGCACCCGATCCACCTACCCATCAGCCCTACTACTGAGTGATG  100

seq1  CCCCAAGGAAATTAAGGTGGTGCCAGAGAGGAAACCGCACTCCCTCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGGAAATTAAGGTGGTGCCAGAGAGGAAACCGCACTCCCTCTCAC  150

seq1  TGCACTGTGAGCCACAACACTCATGTTGTGGAAATTATCTGAATCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTGAGCCACAACACTCATGTTGTGGAAATTATCTGAATCCAGTT  200

seq1  GAATGGGGTTGGGAGATCCACTCTAAGTACAGGCTACACCATTGCATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGGTTGGGAGATCCACTCTAAGTACAGGCTACACCATTGCATGCA  250

seq1  CTATGCTCCCTAATCAATAGAGGAGATAGCAAGCTGAGCAGTCATCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCCCTAATCAATAGAGGAGATAGCAAGCTGAGCAGTCATCTCTG  300

seq1  TTTGCTTCCTCTACAGACACAATGACACCAGCTACCTCAAGCCCCACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCTCTACAGACACAATGACACCAGCTACCTCAAGCCCCACTGA  350

seq1  CATGATGTCCCCTCCATGATTGACTATTGTCCCCTCAAAGCATGATCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTCCCCTCCATGATTGACTATTGTCCCCTCAAAGCATGATCCAA  400

seq1  AATAGACTCTTTTGTCAGATACTTTGTCCCAGTAGGAAACGTAAGTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTCTTTTGTCAGATACTTTGTCCCAGTAGGAAACGTAAGTAATG  450

seq1  CCCTGGTCTCATGTCCTTTGTGGACTGCTTCCATTGGAGCACAGGCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCTCATGTCCTTTGTGGACTGCTTCCATTGGAGCACAGGCTACC  500

seq1  ATCCCTAGCCTTAGTCCCCTAAGGTTCAAACATCGCCATGGTCTCTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGCCTTAGTCCCCTAAGGTTCAAACATCGCCATGGTCTCTAACT  550

seq1  AGTTTCCTTGCATTAGAAACTATCCATGCTGTACCCACAGCCTTCCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTGCATTAGAAACTATCCATGCTGTACCCACAGCCTTCCCCTC  600

seq1  TCCCGCCTCCCCCTCTAAGTCCTTACACCCATGCTTTCGGCTGGCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCTCCCCCTCTAAGTCCTTACACCCATGCTTTCGGCTGGCTTTCC  650

seq1  TGGGCTGACTGCTTAAGACAACAAAGGCAGCTATAACTTGTCCATGTGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGACTGCTTAAGACAACAAAGGCAGCTATAACTTGTCCATGTGCG  700

seq1  TCCTCTGCGGTCTCAGGGGGGTGTGGCACAGCACCAGGCATGGAATGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCGGTCTCAGGGGGGTGTGGCACAGCACCAGGCATGGAATGGGT  750

seq1  GTGTCTCAAGAATAGAGGACTGTGTAAGGGAGAGCCAGTGAGCTAGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAAGAATAGAGGACTGTGTAAGGGAGAGCCAGTGAGCTAGCTGG  800

seq1  AGAGCTGAGGGGTAAACTGTTCAAGCTCTGGCATTAACAGCACCTGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGGGGTAAACTGTTCAAGCTCTGGCATTAACAGCACCTGCAGA  850

seq1  GATGACACACCAGGGAGAAGCAGGAACTCCCCAAATACCTAGAGCAACCT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATGACACACCAGGGAGAAGCA-GAACTCCCCAAATACCTAGAGCAACCT  899

seq1  CAGCAGCCCCTCACCAGGATCCTCTTCTCAGATCCTTTGTATTCGTAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCCCTCACCAGGATCCTCTTCTCAGATCCTTTGTATTCGTAAGC  949

seq1  CAGGTTGATGGATATGGTTTACACACACACACACACACACACACACACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGATGGATATGGTTTACACACACACACACACACACACACACACAC  999

seq1  ACGAGAGGTGAGGCGAAAGAACCTATTAAATAAACATGAAGTTTTATCCT  1050
      ||||||||||| ||||||||  |||||||||||||||| |||||||| ||
seq2  ACGAGAGGTGA-GCGAAAGA--CTATTAAATAAACATG-AGTTTTATTCT  1045

seq1  ACATAGTAAGAGCTTAATGAGCCTAATTTCCCATTTCAGCTGATTTTTGT  1100
      |||||||| ||||||||||||| |||||| ||||||||||||||||||||
seq2  ACATAGTAGGAGCTTAATGAGCTTAATTT-CCATTTCAGCTGATTTTTGT  1094

seq1  ACAGTGGAGGGGGT-GCTTAGAG-ATATCGTTAGAGGAGGCAGAAGGAAG  1148
      |||||||||||||| |||||||| |||||| |||||||||| ||| ||||
seq2  ACAGTGGAGGGGGTGGCTTAGAGAATATCGGTAGAGGAGGC-GAA-GAAG  1142

seq1  TTTCT-GGACTCCACAGCAACATCCAACACCATTGTTTACCCAAGGCCAC  1197
      ||||| ||| |||| |||||||| ||  |||||||  || ||||||||| 
seq2  TTTCTGGGATTCCA-AGCAACATTCA--ACCATTG-GTAACCAAGGCCA-  1187

seq1  CAAGAGCTGGAAATGTAGCATCCTCCTTCTGAGATGTTCCCATGGAAACC  1247
      |||| |||| |                                       
seq2  CAAG-GCTGAA---------------------------------------  1197

seq1  ATGCATGTGCTATGCATACAGAAGGGCAGCTTCTAGCACCATCCACTAGC  1297
                                                        
seq2  --------------------------------------------------  1197

seq1  CGTGGCTCCTGAGACAATGTGGTACCCAAAGTAAGAGCCTGCAAATAAGG  1347
                                                        
seq2  --------------------------------------------------  1197

seq1  AAAGGGCAGGGGCACAAAACATCTGCTGCTTCACAGCCAGAAAACGCATC  1397
                                                        
seq2  --------------------------------------------------  1197

seq1  TCCTTTCTCCCTGTACTCCATTAGCTGCCACATCCCCTTCCTGGGAAATG  1447
                                                        
seq2  --------------------------------------------------  1197

seq1  TGCCAGCCCCCTGCGGCCCTGAGCATAGACTTCCCTGGCCTCAGTGATGG  1497
                                                        
seq2  --------------------------------------------------  1197

seq1  GTGAGACAGACATCTACCTAGGAAGGTTGCAATGTTAATTTCAACCTGTC  1547
                                                        
seq2  --------------------------------------------------  1197

seq1  ATGTCACAGGCAGAAATAAGACAAGGCTGAA  1578
                                     
seq2  -------------------------------  1197

seq1: chr14_67660763_67661811
seq2: B6Ng01-107C20.g_65_1115 (reverse)

seq1  CACACATTCTAAATTCCACCTCTGCAAG-AAAGAT-GTGCAATATATTCA  48
      |||||| ||| |||| |||||| ||||| |||||| ||||||||||||||
seq2  CACACA-TCTTAATT-CACCTCCGCAAGAAAAGATGGTGCAATATATTCA  48

seq1  TAAGGAGTTAATAAATGTTTGAAAATAGAGTAAGAAAACCTAGACACACA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTTAATAAATGTTTGAAAATAGAGTAAGAAAACCTAGACACACA  98

seq1  TTCACAAAACTGCCAAGGAGTAAAGACAAATAGCTCATGGGT-CAAATGC  147
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCACAAAACTGCCAAGGAGTAAAGACAAATAGCTCATGGGTCCAAATGC  148

seq1  CTATCTAGATGGGCTATAGGTGAGAAATACCATCTCAAAAAT-AAGGTAC  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTATCTAGATGGGCTATAGGTGAGAAATACCATCTCAAAAATAAAGGTAC  198

seq1  GGTGAGGTCAGTCTGGTCTACAATAGGAGACCTAGGCTACAGAGTTACAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGTCAGTCTGGTCTACAATAGGAGACCTAGGCTACAGAGTTACAC  248

seq1  AATTACCCTGTTAAAAATAATAAATAATTCCAGGTGGTGGTGGTACACAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCTGTTAAAAATAATAAATAATTCCAGGTGGTGGTGGTACACAT  298

seq1  CTTTAACCCCAGCACTTTGGAGGAAGAGGCACAAGAATCTATGAATTCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCCCAGCACTTTGGAGGAAGAGGCACAAGAATCTATGAATTCAA  348

seq1  GGCCACCCTGCTCTATAGAGGGAGTACCAGGACAGCCAGAGGTATACAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTGCTCTATAGAGGGAGTACCAGGACAGCCAGAGGTATACAGA  398

seq1  GAAACCCTGCCTCAAAAAACAAACAAATGATAATAGTAATGTCAAAGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTGCCTCAAAAAACAAACAAATGATAATAGTAATGTCAAAGGAA  448

seq1  AAATATAAAACACAAAAATTAATCCTAGCACATAAAGATCAAATAAATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAACACAAAAATTAATCCTAGCACATAAAGATCAAATAAATGT  498

seq1  GTAGAGATGCCTCCTCATGTTGCACTTAGGACTGACTGTAGCTCAGAGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATGCCTCCTCATGTTGCACTTAGGACTGACTGTAGCTCAGAGGG  548

seq1  AGAGCACATTTTTTTATAGCACACAGGACCCATTTCAGCCCCAGAACCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACATTTTTTTATAGCACACAGGACCCATTTCAGCCCCAGAACCAA  598

seq1  CAAGTAAATGAATACAAATAAAGGGAAGAAGACCTAACTTGGATAAACTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAATGAATACAAATAAAGGGAAGAAGACCTAACTTGGATAAACTG  648

seq1  CTGAAGTGTGTCTAGCCATCTGGGTTGGAGGGTCCTGCAAGCTGTACTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGTGTCTAGCCATCTGGGTTGGAGGGTCCTGCAAGCTGTACTTC  698

seq1  AAAATACAAAGTAAAGGCCAAGCTCATGCTGAGCCATGTCCAGCTGTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAAGTAAAGGCCAAGCTCATGCTGAGCCATGTCCAGCTGTTAT  748

seq1  GCATCTTTAATTGTACCCTTAAGTCTCATAAACGGCAAGGGAAGAGAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTAATTGTACCCTTAAGTCTCATAAACGGCAAGGGAAGAGAATT  798

seq1  CTTAATCCTACTTCTGAGAACTAGTGTTATTTTAGTAACTTGGCAGAGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCTACTTCTGAGAACTAGTGTTATTTTAGTAACTTGGCAGAGGG  848

seq1  TAGGTACTGTGTGATTGAACATCTCAGTATCAAAAGGAAGGTCTCTATCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACTGTGTGATTGAACATCTCAGTATCAAAAGGAAGGTCTCTATCA  898

seq1  TAAAAGTGCCATCATACCAGTTTTCTAAAAGTTACAAAGCAGTTTAATAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGCCATCATACCAGTTTTCTAAAAGTTACAAAGCAGTTTAATAC  948

seq1  TCTAAGGACAATATCCAAAAACTGAAAACAAATTACCAGAACATAGACAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGACAATATCCAAAAACTGAAAACAAATTACCAGAACATAGACAG  998

seq1  GTAAGAGATAGGAAAGCCATTACTGTATCATTTCTACAGGAACACCAGAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGATAGGAAAGCCATTACTGTATCATTTCTACAGGAACACCAGAA  1048

seq1  TTC  1049
      |||
seq2  TTC  1051