BAC Information

Click to search

BAC

Clone NameB6Ng01-107M03
Chromosome14 (Build37)
Map Location 73,334,320 - 73,448,320
singlet/doubletdoublet
Overlap geneLOC668487, LOC668489, Cysltr2
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723
Downstream geneLOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107M03.bB6Ng01-107M03.g
ACCDH915129DH915130
length1,1241,119
definitionDH915129|Mus musculus domesticus DNA, BAC clone: B6Ng01-107M03, 5' end.DH915130|Mus musculus domesticus DNA, BAC clone: B6Ng01-107M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,447,176 - 73,448,320)(73,334,320 - 73,335,460)
sequence
gaattcacatgtgtggagggctgtgtgcttggaacccattcatttgggaa
catccattggcgatttttagcttgggctgcacctcagtcagaaacacttc
atcttaggagattagaaaacaacccctcaaaaacggattttctggtattg
gccagtctttaatgtgtttttgtctactattaattcccaggtgatgttaa
tgaatagtcagttaaaaaagttaaataagctgtttgaatactttctagtc
ttttacatgtacctgagagtaatatgaatgaagaaataagaagatgcaat
caaaggcaagtctttttttttaactctgtaaatagcttatagagctaatt
tatggggcatataagaattttagaagtctttgtcatctaccttaaccact
tcaacccttgagatgcgaccatactcggaagcttcagttcactaatgctt
gaagtaagtagatttgtttccatggcttgggaaggtaggaactagagaag
cagagactctagaaggttctaaatatgttaccattaagctcactgtgtgc
tagtacctgtcaaggctgtcatatttctttggtttcacaaccttgtaagg
tcattcaagagatgtgtgccaagttacaaacataccacaggtatagaaga
tggctaagactggatctaatgtctcaccctgcttttcaagagaaattgtt
ttcactggatccttatccctctaaggaaaatatggactgaatttatataa
gagctgtgttctgctttctcccctaagaaaggatagacagataaagggta
actaattaacccaggctgaatcagtctttcctgagcttcctacaggaaca
tacttgaacttaatttgatcaacagcatgccagatgaatttcttcttgtt
ttcattccatggagatagtacctctttagcatctttgatacaatagaatt
ttgtagtatatttgtatatagagacatgtatatatatatatttctcattt
tgtagatggcaaaacaagccctggggtcacaggtatttccctagtagagc
aattggcaagccagagatctgctacattcttataacccaataataactat
tttagaatgatgaatgatttcttt
gaattccactgggtttgcctctgattaaaattgcattcttgcacctatgg
aaccccagatactgcgacaaagaaaatagtctctgctttttctggaagtt
agtatcacagtgtagagtctacagtctcctctgttccatggccgagtttc
ccttcctctacaattcctaataaacccatcaggaagcttatgctattatg
tggtactgggcagagttagtacgtgacatgccacatggtgccacctctgc
aacagtcttctttttaacaagggtaacatgctaggctcagtggtttctgc
ccactctaccagttgttagagagcagtttttcttgctgacaaaggacagt
aaaactgtcaggtcccagaactgactattccagaaaaaaaagctcttcag
aaaatctgttttactcattcctttccttgatgtgctttttggtgacctaa
cattttggagtctcaccaacttgtagggctaactggcgccgtttgaaaca
ctcagtcatgggtaagaaatgccatagagggtcaacagcatcctcagcac
caggtcccccacatgagtgcatctggcagttcatgctttacaagtggctc
cctggcaggactcagtacctgtgtcactttgtttataagctgacatctct
tgctccttggtgttccactcctcttggtctcgccatctggagatgagctt
ccaagaagatgccatagcctgtaggtatctaatgggcaatttcttattcc
tggtgttccctggcctcctcagaaatgtctgtgattccaattatgtaaca
acaccatgtttagactaagtgtccagaggaaaggggaaaatctgctgtca
accaaaacaaaatgagtttagaggtagagacaatgtaaaaacagattgtt
aagtgtttatctatctcacagtgggcattctaaagaaaccattaccagtg
ccatatcagcagggttatgggagatgagaccgtagagcacacattgggtg
tgcttgtttgaagaaaactgcaaattctgcatttctgtcattaaagacga
ggatgacatcagcaatatagtggcaggaggcttaatcatcttcccaactg
aaactagtacagcaacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_73447176_73448320
seq2: B6Ng01-107M03.b_46_1169 (reverse)

seq1  AAAGAAAATTCATTTCATCAATTCCTTAAAATAGTTATTATTTGGGTTAT  50
      |||||||  ||| |||||| ||||  |||||||||||||| |||||||||
seq2  AAAGAAA--TCA-TTCATC-ATTC--TAAAATAGTTATTA-TTGGGTTAT  43

seq1  AAGAATGTAGCCAGATCCTCTGGGCTTGCCAATTTGCTTCTACCTAGGGA  100
      |||||||||| ||||| |||| |||||||||| |||| |||| |||||||
seq2  AAGAATGTAG-CAGAT-CTCT-GGCTTGCCAA-TTGC-TCTA-CTAGGGA  87

seq1  AATACCCTGTGACCCCAGGGCTTTGTTTTTGCCATCTACAAAATGAGAAA  150
      |||| ||||||||||||||||||   ||||||||||||||||||||||||
seq2  AATA-CCTGTGACCCCAGGGCTT--GTTTTGCCATCTACAAAATGAGAAA  134

seq1  TATATTATATATACATGTCTCTATATACAAATATACTACAAAAATTCTTA  200
      |||| |||||||||||||||||||||||||||||||||| ||||||||  
seq2  TATA-TATATATACATGTCTCTATATACAAATATACTAC-AAAATTCT--  180

seq1  TTTGTATCAAAGATGCTAAAGAGGTACTATTCTCCATGGAATGAAAACAA  250
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTGTATCAAAGATGCTAAAGAGGTACTA-TCTCCATGGAATGAAAACAA  229

seq1  GAAGAAATTCATCTGGCATGCTGTTGATCAAATTAAGTTCAAGTATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTCATCTGGCATGCTGTTGATCAAATTAAGTTCAAGTATGTTC  279

seq1  CTGTAGGAAGCTCAGGAAAGACTGATTCAGCCTGGGTTAATTAGTTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAAGCTCAGGAAAGACTGATTCAGCCTGGGTTAATTAGTTACCC  329

seq1  TTTATCTGTCTATCCTTTCTTAGGGGAGAAAGCAGAACACAGCTCTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGTCTATCCTTTCTTAGGGGAGAAAGCAGAACACAGCTCTTATA  379

seq1  TAAATTCAGTCCATATTTTCCTTAGAGGGATAAGGATCCAGTGAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAGTCCATATTTTCCTTAGAGGGATAAGGATCCAGTGAAAACAA  429

seq1  TTTCTCTTGAAAAGCAGGGTGAGACATTAGATCCAGTCTTAGCCATCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTGAAAAGCAGGGTGAGACATTAGATCCAGTCTTAGCCATCTTC  479

seq1  TATACCTGTGGTATGTTTGTAACTTGGCACACATCTCTTGAATGACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGTGGTATGTTTGTAACTTGGCACACATCTCTTGAATGACCTTA  529

seq1  CAAGGTTGTGAAACCAAAGAAATATGACAGCCTTGACAGGTACTAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGTGAAACCAAAGAAATATGACAGCCTTGACAGGTACTAGCACA  579

seq1  CAGTGAGCTTAATGGTAACATATTTAGAACCTTCTAGAGTCTCTGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTTAATGGTAACATATTTAGAACCTTCTAGAGTCTCTGCTTCT  629

seq1  CTAGTTCCTACCTTCCCAAGCCATGGAAACAAATCTACTTACTTCAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCTACCTTCCCAAGCCATGGAAACAAATCTACTTACTTCAAGCA  679

seq1  TTAGTGAACTGAAGCTTCCGAGTATGGTCGCATCTCAAGGGTTGAAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGAACTGAAGCTTCCGAGTATGGTCGCATCTCAAGGGTTGAAGTGG  729

seq1  TTAAGGTAGATGACAAAGACTTCTAAAATTCTTATATGCCCCATAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTAGATGACAAAGACTTCTAAAATTCTTATATGCCCCATAAATTA  779

seq1  GCTCTATAAGCTATTTACAGAGTTAAAAAAAAAGACTTGCCTTTGATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATAAGCTATTTACAGAGTTAAAAAAAAAGACTTGCCTTTGATTGC  829

seq1  ATCTTCTTATTTCTTCATTCATATTACTCTCAGGTACATGTAAAAGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTATTTCTTCATTCATATTACTCTCAGGTACATGTAAAAGACTA  879

seq1  GAAAGTATTCAAACAGCTTATTTAACTTTTTTAACTGACTATTCATTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTCAAACAGCTTATTTAACTTTTTTAACTGACTATTCATTAAC  929

seq1  ATCACCTGGGAATTAATAGTAGACAAAAACACATTAAAGACTGGCCAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTGGGAATTAATAGTAGACAAAAACACATTAAAGACTGGCCAATA  979

seq1  CCAGAAAATCCGTTTTTGAGGGGTTGTTTTCTAATCTCCTAAGATGAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAATCCGTTTTTGAGGGGTTGTTTTCTAATCTCCTAAGATGAAGT  1029

seq1  GTTTCTGACTGAGGTGCAGCCCAAGCTAAAAATCGCCAATGGATGTTCCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGACTGAGGTGCAGCCCAAGCTAAAAATCGCCAATGGATGTTCCC  1079

seq1  AAATGAATGGGTTCCAAGCACACAGCCCTCCACACATGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATGGGTTCCAAGCACACAGCCCTCCACACATGTGAATTC  1124

seq1: chr14_73334320_73335460
seq2: B6Ng01-107M03.g_67_1185

seq1  GAATTCCACTGGGTTTGCCTCTGATTAAAATTGCATTCTTGCACCTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGGGTTTGCCTCTGATTAAAATTGCATTCTTGCACCTATGG  50

seq1  AACCCCAGATACTGCGACAAAGAAAATAGTCTCTGCTTTTTCTGGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGATACTGCGACAAAGAAAATAGTCTCTGCTTTTTCTGGAAGTT  100

seq1  AGTATCACAGTGTAGAGTCTACAGTCTCCTCTGTTCCATGGCCGAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACAGTGTAGAGTCTACAGTCTCCTCTGTTCCATGGCCGAGTTTC  150

seq1  CCTTCCTCTACAATTCCTAATAAACCCATCAGGAAGCTTATGCTATTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTACAATTCCTAATAAACCCATCAGGAAGCTTATGCTATTATG  200

seq1  TGGTACTGGGCAGAGTTAGTACGTGACATGCCACATGGTGCCACCTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGGGCAGAGTTAGTACGTGACATGCCACATGGTGCCACCTCTGC  250

seq1  AACAGTCTTCTTTTTAACAAGGGTAACATGCTAGGCTCAGTGGTTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTTCTTTTTAACAAGGGTAACATGCTAGGCTCAGTGGTTTCTGC  300

seq1  CCACTCTACCAGTTGTTAGAGAGCAGTTTTTCTTGCTGACAAAGGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTACCAGTTGTTAGAGAGCAGTTTTTCTTGCTGACAAAGGACAGT  350

seq1  AAAACTGTCAGGTCCCAGAACTGACTATTCCAGAAAAAAAAGCTCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTCAGGTCCCAGAACTGACTATTCCAGAAAAAAAAGCTCTTCAG  400

seq1  AAAATCTGTTTTACTCATTCCTTTCCTTGATGTGCTTTTTGGTGACCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTTTTACTCATTCCTTTCCTTGATGTGCTTTTTGGTGACCTAA  450

seq1  CATTTTGGAGTCTCACCAACTTGTAGGGCTAACTGGCGCCGTTTGAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGAGTCTCACCAACTTGTAGGGCTAACTGGCGCCGTTTGAAACA  500

seq1  CTCAGTCATGGGTAAGAAATGCCATAGAGGGTCAACAGCATCCTCAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCATGGGTAAGAAATGCCATAGAGGGTCAACAGCATCCTCAGCAC  550

seq1  CAGGTCCCCCACATGAGTGCATCTGGCAGTTCATGCTTTACAAGTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCCCCACATGAGTGCATCTGGCAGTTCATGCTTTACAAGTGGCTC  600

seq1  CCTGGCAGGACTCAGTACCTGTGTCACTTTGTTTATAAGCTGACATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGGACTCAGTACCTGTGTCACTTTGTTTATAAGCTGACATCTCT  650

seq1  TGCTCCTTGGTGTTCCACTCCTCTTGGTCTCGCCATCTGGAGATGAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTGGTGTTCCACTCCTCTTGGTCTCGCCATCTGGAGATGAGCTT  700

seq1  CCAAGAAGATGCCATAGCCTGTAGGTATCTAATGGGCAATTTCTTATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGATGCCATAGCCTGTAGGTATCTAATGGGCAATTTCTTATTCC  750

seq1  TGGTGTTCCCTGGCCTCCTCAGAAATGTCTGTGATTCCAATTATGTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCCCTGGCCTCCTCAGAAATGTCTGTGATTCCAATTATGTAACA  800

seq1  ACACCATGTTTAGACTAAGTGTCCAGAGGAAAGGGGAAAATCTGCTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGTTTAGACTAAGTGTCCAGAGGAAAGGGGAAAATCTGCTGTCA  850

seq1  ACCAAAACAAAATGAGTTTAGAGGTAGAGAACAATGTAAAAACAGATTGT  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCAAAACAAAATGAGTTTAGAGGTAGAG-ACAATGTAAAAACAGATTGT  899

seq1  TAAGTGTTTATCTATCTCAACAGTGGGCATTCTAAAGAAACCATTACCAG  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAGTGTTTATCTATCTC-ACAGTGGGCATTCTAAAGAAACCATTACCAG  948

seq1  TGCCATTATCAGCAAGGGTTATGGAAGATGAGAACCGTAAGAAGCACACA  1000
      ||||| ||||||| |||||||||| ||||||| ||||||   ||||||||
seq2  TGCCA-TATCAGC-AGGGTTATGGGAGATGAG-ACCGTA--GAGCACACA  993

seq1  TTGGGTGTGCTTGTTTGAAGAAAACTGCAAATTTCTGCATTTCTGTCAAT  1050
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTGGGTGTGCTTGTTTGAAGAAAACTGCAAA-TTCTGCATTTCTGTC-AT  1041

seq1  AAAAGACAGAGGAATGACATCAGCAATATAGTGGGCAGGGAGGGCTTAAA  1100
       |||||| |||| ||||||||||||||||||| ||||||   ||||| ||
seq2  TAAAGAC-GAGG-ATGACATCAGCAATATAGT-GGCAGG--AGGCTT-AA  1085

seq1  TCATCTTCCCCAACTGAAACACAAATTTAACAGCAAACATT  1141
      ||||||| ||||||||||||     |   ||||| ||||||
seq2  TCATCTT-CCCAACTGAAAC-----TAGTACAGC-AACATT  1119