BAC Information

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BAC

Clone NameB6Ng01-108H05
Chromosome14 (Build37)
Map Location 42,830,264 - 42,831,409
singlet/doubletsinglet
Overlap geneLOC666233
Upstream geneDydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910
Downstream geneLOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108H05.bB6Ng01-108H05.g
ACCDH915634DH915635
length1,135865
definitionDH915634|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H05, 5' end.DH915635|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacgggcctatgtttaggagtctggggacagggactcacaaaat
cctggacatccagacagtgctgggttgcagagagttcacagcaggtttga
ccctgctggcctgcaaggataactgggcaaggggttctcagaatcttgga
catgcaggcactgctagaagtctcagaggagctgagcatggaggaggcca
gcaggctgagaactagccctgaaatcagggaatggggaattctggattag
ctcagaggtgactagcccaggagtattgaggggccttctgttggagactt
agatggcaaggctctgtaggcaaaggctttttctccatgtaacccacagt
tggtttgatgagagagacagtccttggttgtaaactgtttattgattgtt
tttcatggaaatgaaagcataacatgtcttaaggttagactagaagttaa
gtaacttctgaggaaggaatgtccaggaagggaagcttattgactgaacc
ctaccatcttctattacctcattagcagggagaaccctattctcttctaa
ataaccacaggccatgttcctatatacagattttggtcccatgaaagagg
cctggtaggaagcaggtaacacttttgccatctactgtgggtctgggact
tccaacccactcaactttaccaaattctggacatggtagtctactgtccc
aggtgttagtctgagatttattgatgtgaggagacaccaggacatatgtt
tagtatgtgggtctcaatgcctaccctccacactgacacactatttctaa
caaggccacaactcctaaaagtaccactcccatattcaagccaccacact
cctctgcaatctctcaagacatttacctcactctgtcctactgttttctt
tttctccttcacaaattatgtgttctattattttcttgaaatatcctcct
ataacccacactagtgcattaccttctatggatactgcagtttaaatgca
catctctagacatcaatttaccatccacataagacacatgatgtggtatt
tgtctttttggtctgggttttatcactcaaaatataatcatggtgtcatc
attaacgtttaatttcattatattgtcaagttctt
gaattctcaggatggcctttgcttcagtctcagttccacagcttgtctcc
acatttcctcctgtgactcttttgttcacccttctatgacattttttttt
ttgttattctaaatgaatttgcaaattgcttttctaagtataagaacaat
tgatttggaattttgatggggattgcgttgaatctgtagatgcatgatgg
ccatttttactatattaatcctgccaatccatgagaaggggagatctttc
taccttctgagatgttctttgatttctttcttcagagacttgaagttctt
gtcatacagatctttcacttgcctggttagagtctccttcaaggtatttt
cttttgtttgtgactattgagaaggatgtggtttccctaatttctttctc
aggctgtttattttttgagtaaaataaggatactaatttgtttgatataa
ttcatatccagctactgtactgaagttgtatatcaggttgagcagttctc
tggtggtcagtgcttctaaccattggttgtgtgctgacccctgtggttga
attatggaaagctgctaacccctgttgttggaaagctggaagaagctgag
ggcggaggcaaccctgttggagaacaagaacacacagtaaacctgaccct
ggagatctcacagacactgcaataccaaccaggctgcatacaacagctgt
tatgaggcccccaaaatatatacagcagaggactgccaggtctggattca
gtcagagaaaattcacataagcctcaagagaatggaggccctagagagtt
caaaggtctgatgggcgtgggggtggggacatcctgtggacacaggggtt
tagggttggtggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42830264_42831409
seq2: B6Ng01-108H05.b_48_1182

seq1  GAATTCCACGGGCCTATGTTTAGGAGTCTGGGGACAGGGACCCACAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTCCACGGGCCTATGTTTAGGAGTCTGGGGACAGGGACTCACAAAAT  50

seq1  CCTGGACATCCAGACAGTGCTGGGTTGCAGAGAGTTCACAGCAGGTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACATCCAGACAGTGCTGGGTTGCAGAGAGTTCACAGCAGGTTTGA  100

seq1  CCCTGCTGGCCTGCAAGGATAACTGGGCAAGGGGTTCTCAGAATCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGCCTGCAAGGATAACTGGGCAAGGGGTTCTCAGAATCTTGGA  150

seq1  CATGCAGGCACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCACTGCTAGAAGTCTCAGAGGAGCTGAGCATGGAGGAGGCCA  200

seq1  GCAGGCTAAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAG  250
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAG  250

seq1  CTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGACTT  300

seq1  AGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTATCCATGTAACCCACAGT  350
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGT  350

seq1  TGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACTGTTTATTGATTGTT  400

seq1  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450

seq1  GTAACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTGAACC  500

seq1  CTACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTCTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTCTTCTAA  550

seq1  ATAACCACAGGCCATGTTCCTATATACAGATTTTGGTCTCATGAAAGAGG  600
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATAACCACAGGCCATGTTCCTATATACAGATTTTGGTCCCATGAAAGAGG  600

seq1  CCTGGTAGGAAGCAGGTAACACTTTTGCCATCTACTGTGGGTCTGGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAGGAAGCAGGTAACACTTTTGCCATCTACTGTGGGTCTGGGACT  650

seq1  TCCAACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCACTCAACTTTACCAAATTCTGGACATGGTAGTCTACTGTCCC  700

seq1  AGGTGTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTT  750

seq1  TAGTATGCGGGTCTCAATGCCTACCCTCCACACTGACACACTGTTTCTAA  800
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TAGTATGTGGGTCTCAATGCCTACCCTCCACACTGACACACTATTTCTAA  800

seq1  CAAGGCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCACAACTCCTAAAAGTACCACTCCCATATTCAAGCCACCACACT  850

seq1  CCTCTGCAATCTCTCAAGACATTTACCTCACTCTGTCCTACTGTTTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTCTGCAATCTCTCAAGACATTTACCTCACTCTGTCCTACTGTTTT-CT  899

seq1  TTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTCC  949

seq1  TATAACCCAACACTAGTGCATTACCTTCTATGGATACTGCAGTTTAAATG  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCC-ACACTAGTGCATTACCTTCTATGGATACTGCAGTTTAAATG  998

seq1  CACATTTCTAGACATTCAATTTTACCATCCACATAAGACACATGATGTGG  1050
      ||||| |||||||| |||| ||||||||||||||||||||||||||||||
seq2  CACATCTCTAGACA-TCAA-TTTACCATCCACATAAGACACATGATGTGG  1046

seq1  TATTTGTCTTTTTGGGTCTGGGTTATATCACTCAAAAATATTATTCAT-G  1099
      ||||||||||||| |||||||||| |||||||| |||||| || |||| |
seq2  TATTTGTCTTTTT-GGTCTGGGTTTTATCACTC-AAAATA-TAATCATGG  1093

seq1  TGTCCATCCATTAACCTGTAAATTTCATTTATATTGTCATAGTTCTT  1146
      ||| ||| ||||||| | | ||||||| ||||||||||| |||||||
seq2  TGT-CAT-CATTAACGT-TTAATTTCA-TTATATTGTCA-AGTTCTT  1135