BAC Information

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BAC

Clone NameB6Ng01-108H21
Chromosome14 (Build37)
Map Location 28,325,515 - 28,475,648
singlet/doubletdoublet
Overlap geneLOC665370, Erc2
Upstream geneSlmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66
Downstream geneLOC100040206, Wnt5a, LOC100040218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108H21.bB6Ng01-108H21.g
ACCDH915664DH915665
length1,024985
definitionDH915664|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H21, 5' end.DH915665|Mus musculus domesticus DNA, BAC clone: B6Ng01-108H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,325,515 - 28,326,540)(28,474,661 - 28,475,648)
sequence
gaattcagaaatctgccttcctctgcctcccaagtgctgcctggctaatg
ttcgattcttgattggctttttttttttttttccaaaacaatattctcag
ggggctagaaagatgactcagtaggaaaagtgtttgctgcctaaatgtta
ggtaggggttgaggatggctctgtgctgcttgctctcccaggagaggtta
tctggaatgaggaatgagtcacatattcaggtggcttcctgtgaatcaat
cccctaatgaataaaggagccaatcactgggcaagtaggtgggacttcca
ggttggatggaggaagagaggaagcaggagagagttaggtcctttttgga
acaaaacagcagagggtacgatgtaactgctagagtttcccagtatcttg
ttggatccccaaggattcgccaccagaggaatcagattttaatttaaaat
aagaaagaaagaaagaaagaaagaaaagaaaagaaaagaaaagaaaagaa
aagaaaagaaagaattgaacattataatctcttcttttgtcctctctttg
tttccctctttcttttttctttctttcttcctctccctttctttctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttc
ctctctctctcctgcttgcttgttttcttttcctttctctctctctctct
ctctctctctctctctctttctttcttcctttctttcttttttctttctg
tttctctctctttcttcctttctctttctctttttctttttgatttatct
aattattttacgtttgtattttgcctgcatgtacatttgtgcaccacatg
tgtacctggttgccatgaagatgaggagagggtgtcagatcccttgggga
ctggagttttaagaggttgtgagctggcatgtgacatagggagtgaaccc
tggtccatcgcaaggtcgaatgctataaaccactgactcatctctcagtc
ttatttatataatattatttttaa
gaattctgtttgtcaggctgccccagctcttggctgcaagcctacactct
gccaaaaaccccacttcccaaactttagaaaatgttctccacagctttca
aagcctgacctttaaagcagatttatctgggggtgtatatgtgtgtgaga
gagagatttataattttctatattcctgcaaagccaaactatttattgag
tccacctggtagtggtgggaatttgcacacagatgccaatggacccaaaa
aacatcacaagagctccacctgcaactaattatagaaattgaaattgaac
tctggccagaagagaacccaccccatctgtgttggccaataaaatcaccc
tgttgcttttcccctgtcaatgaattaatgttgtccacggaaaggattat
tagacaatgttttgaagatgctcactatcatctatcctaccgtcccttct
ctgtgtgtggtttcaataagaacctttggcatagtgggactgaaagaatc
tacacactgaagaagttcaatacgttttctttgtttgcacttgcacaacg
aaatcccattgcccaaggaacatgatgcagagaaaaaaagaatcaggaat
catttagattcctgccaaggtccaccatacaagttttcttgcccttatat
gaaccaaatctttccaaagaaatcctgagaataaatgtcagtgagtctac
tcatgtgatacacatgcctgactctagggctgacagctagagattactga
ggtagaaaacagctgacatctgtgacgaagatgtatagctcacttcaagt
cattcccttacactcttaacaaagaggcccgctttggcactgtgccatct
catcgatcttgtgagccaagaaactctcacctatctctagaagacattaa
aactgcatttctgtctaagcagatcatcgcctaagattggataaagatct
tctagcttttcaggaactggggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28325515_28326540
seq2: B6Ng01-108H21.b_38_1061

seq1  GAATTCAGAAATCTGCCTTCCTCTGCCTCCCAAGTGCTGCCTGGCTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTTCCTCTGCCTCCCAAGTGCTGCCTGGCTAATG  50

seq1  TTCGATTCTTGATTGGCTTTTTTTTTTTTTTTCCAAAACAATATTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTCTTGATTGGCTTTTTTTTTTTTTTTCCAAAACAATATTCTCAG  100

seq1  GGGGCTAGAAAGATGACTCAGTAGGAAAAGTGTTTGCTGCCTAAATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGAAAGATGACTCAGTAGGAAAAGTGTTTGCTGCCTAAATGTTA  150

seq1  GGTAGGGGTTGAGGATGGCTCTGTGCTGCTTGCTCTCCCAGGAGAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGTTGAGGATGGCTCTGTGCTGCTTGCTCTCCCAGGAGAGGTTA  200

seq1  TCTGGAATGAGGAATGAGTCACATATTCAGGTGGCTTCCTGTGAATCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGAGGAATGAGTCACATATTCAGGTGGCTTCCTGTGAATCAAT  250

seq1  CCCCTAATGAATAAAGGAGCCAATCACTGGGCAAGTAGGTGGGACTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATGAATAAAGGAGCCAATCACTGGGCAAGTAGGTGGGACTTCCA  300

seq1  GGTTGGATGGAGGAAGAGAGGAAGCAGGAGAGAGTTAGGTCCTTTTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGATGGAGGAAGAGAGGAAGCAGGAGAGAGTTAGGTCCTTTTTGGA  350

seq1  ACAAAACAGCAGAGGGTACGATGTAACTGCTAGAGTTTCCCAGTATCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGCAGAGGGTACGATGTAACTGCTAGAGTTTCCCAGTATCTTG  400

seq1  TTGGATCCCCAAGGATTCGCCACCAGAGGAATCAGATTTTAATTTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCCCAAGGATTCGCCACCAGAGGAATCAGATTTTAATTTAAAAT  450

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAA  500

seq1  AAGAAAAGAAAGAATTGAACATTATAATCTCTTCTTTTGTCCTCTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAGAATTGAACATTATAATCTCTTCTTTTGTCCTCTCTTTG  550

seq1  TTTCCCTCTTTCTTTTTTCTTTCTTTCTTCCTCTCCCTTTCTTTCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTTTCTTTTTTCTTTCTTTCTTCCTCTCCCTTTCTTTCTTTCT  600

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTC  650

seq1  CTCTCTCTCTCCTGCTTGCTTGTTTTCTTTTCCTTTCTCTCTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCCTGCTTGCTTGTTTTCTTTTCCTTTCTCTCTCTCTCTCT  700

seq1  CTCTCTCTCTCTCTCTCTTTCTTTCTTCCTTTCTTTCTTTTTTCTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTTTCTTTCTTCCTTTCTTTCTTTTTTCTTTCTG  750

seq1  TTTCTCTCTCTTTCTTCCTTTCTCTTTCTCTTTTTCTTTTTGATTTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTTTCTTCCTTTCTCTTTCTCTTTTTCTTTTTGATTTATCT  800

seq1  AATTATTTTACGTTTGTATTTTGCCTGCATGTACATTTGTGCACCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTACGTTTGTATTTTGCCTGCATGTACATTTGTGCACCACATG  850

seq1  TGTACCTGGTTGCCATGAAGATGAGGAGAGGGTGTCAGATCCCTT-GGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTACCTGGTTGCCATGAAGATGAGGAGAGGGTGTCAGATCCCTTGGGGA  900

seq1  CTGGAGTTTCAAGAGGTTGTGAGCTGCCATGTGACATAGGGAGTGAACCC  949
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  CTGGAGTTTTAAGAGGTTGTGAGCTGGCATGTGACATAGGGAGTGAACCC  950

seq1  TGGTCCACCGCAAGGTCGAATGCTATTAACCACTGACTCATCTCTCCAGT  999
      ||||||| |||||||||||||||||| |||||||||||||||||| ||||
seq2  TGGTCCATCGCAAGGTCGAATGCTATAAACCACTGACTCATCTCT-CAGT  999

seq1  CTTATTTATTATTATTATTATTTTTAA  1026
      |||||||||   || ||||||||||||
seq2  CTTATTTAT--ATAATATTATTTTTAA  1024

seq1: chr14_28474661_28475648
seq2: B6Ng01-108H21.g_67_1051 (reverse)

seq1  CCCCCCCCCCCCCCCCCAGTTTCCTGGAAAGCTAGAGGATCTTTTATCCA  50
      ||||||||||||||||||| |||||| ||||||||| |||| ||||||||
seq2  CCCCCCCCCCCCCCCCCAG-TTCCTGAAAAGCTAGAAGATC-TTTATCCA  48

seq1  ATCTTAGGCGATGATCTGCTTAGACAGAAATGCAGTTTTAATGTCTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGCGATGATCTGCTTAGACAGAAATGCAGTTTTAATGTCTTCTA  98

seq1  GAGATAGGTGAGAGTTTCTTTGGCTCACAAGATCGATGAGATGGCACAGT  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGATAGGTGAGAGTTTC-TTGGCTCACAAGATCGATGAGATGGCACAGT  147

seq1  GCCAAAGCGGGCCTCTTTGTTAAGAGTGTAAGGGAATGACTTGAAGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCGGGCCTCTTTGTTAAGAGTGTAAGGGAATGACTTGAAGTGAG  197

seq1  CTATACATCTTCGTCACAGATGTCAGCTGTTTTCTACCTCAGTAATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACATCTTCGTCACAGATGTCAGCTGTTTTCTACCTCAGTAATCTCT  247

seq1  AGCTGTCAGCCCTAGAGTCAGGCATGTGTATCACATGAGTAGACTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCAGCCCTAGAGTCAGGCATGTGTATCACATGAGTAGACTCACTG  297

seq1  ACATTTATTCTCAGGATTTCTTTGGAAAGATTTGGTTCATATAAGGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTCTCAGGATTTCTTTGGAAAGATTTGGTTCATATAAGGGCAA  347

seq1  GAAAACTTGTATGGTGGACCTTGGCAGGAATCTAAATGATTCCTGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTGTATGGTGGACCTTGGCAGGAATCTAAATGATTCCTGATTCT  397

seq1  TTTTTTCTCTGCATCATGTTCCTTGGGCAATGGGATTTCGTTGTGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTGCATCATGTTCCTTGGGCAATGGGATTTCGTTGTGCAAGT  447

seq1  GCAAACAAAGAAAACGTATTGAACTTCTTCAGTGTGTAGATTCTTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAGAAAACGTATTGAACTTCTTCAGTGTGTAGATTCTTTCAGT  497

seq1  CCCACTATGCCAAAGGTTCTTATTGAAACCACACACAGAGAAGGGACGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTATGCCAAAGGTTCTTATTGAAACCACACACAGAGAAGGGACGGT  547

seq1  AGGATAGATGATAGTGAGCATCTTCAAAACATTGTCTAATAATCCTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGATGATAGTGAGCATCTTCAAAACATTGTCTAATAATCCTTTCC  597

seq1  GTGGACAACATTAATTCATTGACAGGGGAAAAGCAACAGGGTGATTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAACATTAATTCATTGACAGGGGAAAAGCAACAGGGTGATTTTAT  647

seq1  TGGCCAACACAGATGGGGTGGGTTCTCTTCTGGCCAGAGTTCAATTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACACAGATGGGGTGGGTTCTCTTCTGGCCAGAGTTCAATTTCAA  697

seq1  TTTCTATAATTAGTTGCAGGTGGAGCTCTTGTGATGTTTTTTGGGTCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAATTAGTTGCAGGTGGAGCTCTTGTGATGTTTTTTGGGTCCAT  747

seq1  TGGCATCTGTGTGCAAATTCCCACCACTACCAGGTGGACTCAATAAATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTGTGTGCAAATTCCCACCACTACCAGGTGGACTCAATAAATAG  797

seq1  TTTGGCTTTGCAGGAATATAGAAAATTATAAATCTCTCTCTCACACACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTGCAGGAATATAGAAAATTATAAATCTCTCTCTCACACACAT  847

seq1  ATACACCCCCAGATAAATCTGCTTTAAAGGTCAGGCTTTGAAAGCTGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCCCCAGATAAATCTGCTTTAAAGGTCAGGCTTTGAAAGCTGTGG  897

seq1  AGAACATTTTCTAAAGTTTGGGAAGTGGGGTTTTTGGCAGAGTGTAGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTTCTAAAGTTTGGGAAGTGGGGTTTTTGGCAGAGTGTAGGCT  947

seq1  TGCAGCCAAGAGCTGGGGCAGCCTGACAAACAGAATTC  988
      ||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAAGAGCTGGGGCAGCCTGACAAACAGAATTC  985