BAC Information

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BAC

Clone NameB6Ng01-109B12
Chromosome14 (Build37)
Map Location 123,798,027 - 123,896,344
singlet/doubletdoublet
Overlap geneVgcnl1
Upstream geneClybl, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneItgbl1, LOC668700, Fgf14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109B12.bB6Ng01-109B12.g
ACCDH916098DH916099
length1,1201,142
definitionDH916098|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B12, 5' end.DH916099|Mus musculus domesticus DNA, BAC clone: B6Ng01-109B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,798,027 - 123,799,171)(123,895,202 - 123,896,344)
sequence
gaattccaggaatgtatcagacacagtgtagttgggactcagatgcaata
ctgttcaaagtagagtttacaactgaatccagcaggtacagttattatct
acataggtgaaaacactgtggttcaggtgaggcctgggttcagaaacaga
tacaactctttacttattctggatcaatcactagcccatagagtttacta
tacatttacttgctatggctataatattattagttcaacaaagcacagct
accattttccccatttaaatatctaccaaaaaattagatgaatgaccaat
attaaaaatacatagatatgtggaaataaattctcttggcttttttagga
gtaaatttggtgagataatagtcttttcatttctgttgatggctgaaaat
gtaatatttttctatcaatgcaactcaattcttggggtctgttatgttag
aatatatgctctaatttttcaggagtgatctaaggtcaagcatagtcaca
tcacctggcacctggtccattgtgagctacacaagacattttccatctcc
tatgcggagtaatggtgatgcttgtttgcagaggtgggagaacctggatt
tttgatctgccagtgtagccatcacctcagctcctgctgagttttggttc
ctaatgatgtcttctgtgtggtttctcagagctgctgaggcaaaaaatgc
atatacttggcgccttccatgtggacatttattctatcaccattctagag
gccagaggtctaaagggtagcctgcaacaggagtatatgtcttccagtgc
ttctaggaaaggatccttcctttcctcttgtagcttctgatgcccccagg
ccatcacttgttttttcttagagcatcaacttccaattctatctcataag
ggcctctctttctcctcttatccttttgagtttctcttcaacgtaataag
ttatatagaatattgttattattattcttatttactgaatttgagatccc
ctcaatactcagaggattttatcccaaattttaatttattatatctgcag
tcctctttcaaatttgagggcttgtttttgttctttgttcagtagtactc
aatattttaaccagcttatc
gaattctttaaggaagtttatgatttatattttaaattttatgtcacagg
atttagtaaggtaattttcattgaagaaaattctataggactggttggct
tcaggagttgtggaagatactgtttcaaactttaatattgatagcatatt
tttccacaatgatatctgggcatgtgttctccttttgttagctctgtatc
tgaatcaacagagcaggttgtggcagaacacaggattttcaggctgtttt
gggtctaaatgttgggtataacttaagtggaatgaggtcaattagacaga
gggtcttgggctgtcatgcataatgttcatcatggcccaaccctgggtag
atctgagggttgagcatattgtaaggagggaagatcatttggattaattg
agctaggatctagggtaaatatttacagttcttggttgagtcaagaggtt
aaatgtggcacatgatgtatctgggagtgggcagacaatgtcttggctga
agtctgtgggatgggaccagtgtaaccaagggtagctagatgaggtagaa
acactggatatgggacctgggaaaatcttgggggctgaagaagatgtgtg
ggggttagcagattaggagaactcttctggctagactctgctgaaatata
tacaagacccatctaggtggaggtgctggaatatggcactcaggggacct
gaacaatgaggcaaacaggccaatgacagcacacataaatagcaacatac
ataaatttccatccttctgatggcagttgttaaatgcagacatcttttca
aacattagccacttataaatttctgcagattcataagcaattttcaaatt
gctaacatttcacttgcccacttattggctaattattctaaatgattttt
taaatctcttacatttctaaagtatgagtcacttgtttataaatatgaaa
cataaaaagtatcaaatatgagacaaatccagtgtggatactagatgcat
gatgccacactgtgtactcttctgttgtttttggcagtgaggccagattt
ctcacaccattattatgaaacaatttagaaagttctctttgattgtgtgc
cttagtggtggcttcagaatttgaaaagttaatagacccttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_123798027_123799171
seq2: B6Ng01-109B12.b_49_1168

seq1  GAATTCCAGGAATGTATCAGACACAGTGTAGTTGGGACTCAGATGCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAATGTATCAGACACAGTGTAGTTGGGACTCAGATGCAATA  50

seq1  CTGTTCAAAGTAGAGTTTACAACTGAATCCAGCAGGTACAGTTATTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAAAGTAGAGTTTACAACTGAATCCAGCAGGTACAGTTATTATCT  100

seq1  ACATAGGTGAAAACACTGTGGTTCAGGTGAGGCCTGGGTTCAGAAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTGAAAACACTGTGGTTCAGGTGAGGCCTGGGTTCAGAAACAGA  150

seq1  TACAACTCTTTACTTATTCTGGATCAATCACTAGCCCATAGAGTTTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTCTTTACTTATTCTGGATCAATCACTAGCCCATAGAGTTTACTA  200

seq1  TACATTTACTTGCTATGGCTATAATATTATTAGTTCAACAAAGCACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTACTTGCTATGGCTATAATATTATTAGTTCAACAAAGCACAGCT  250

seq1  ACCATTTTCCCCATTTAAATATCTACCAAAAAATTAGATGAATGACCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTCCCCATTTAAATATCTACCAAAAAATTAGATGAATGACCAAT  300

seq1  ATTAAAAATACATAGATATGTGGAAATAAATTCTCTTGGCTTTTTTAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATACATAGATATGTGGAAATAAATTCTCTTGGCTTTTTTAGGA  350

seq1  GTAAATTTGGTGAGATAATAGTCTTTTCATTTCTGTTGATGGCTGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTTGGTGAGATAATAGTCTTTTCATTTCTGTTGATGGCTGAAAAT  400

seq1  GTAATATTTTTCTATCAATGCAACTCAATTCTTGGGGTCTGTTATGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTTTCTATCAATGCAACTCAATTCTTGGGGTCTGTTATGTTAG  450

seq1  AATATATGCTCTAATTTTTCAGGAGTGATCTAAGGTCAAGCATAGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGCTCTAATTTTTCAGGAGTGATCTAAGGTCAAGCATAGTCACA  500

seq1  TCACCTGGCACCTGGTCCATTGTGAGCTACACAAGACATTTTCCATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGCACCTGGTCCATTGTGAGCTACACAAGACATTTTCCATCTCC  550

seq1  TATGCGGAGTAATGGTGATGCTTGTTTGCAGAGGTGGGAGAACCTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGGAGTAATGGTGATGCTTGTTTGCAGAGGTGGGAGAACCTGGATT  600

seq1  TTTGATCTGCCAGTGTAGCCATCACCTCAGCTCCTGCTGAGTTTTGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTGCCAGTGTAGCCATCACCTCAGCTCCTGCTGAGTTTTGGTTC  650

seq1  CTAATGATGTCTTCTGTGTGGTTTCTCAGAGCTGCTGAGGCAAAAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATGTCTTCTGTGTGGTTTCTCAGAGCTGCTGAGGCAAAAAATGC  700

seq1  ATATACTTGGCGCCTTCCATGTGGACATTTATTCTATCACCATTCTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTGGCGCCTTCCATGTGGACATTTATTCTATCACCATTCTAGAG  750

seq1  GCCAGAGGTCTAAAGGGTAGCCTGCAACAGGAGTATATGTCTTCCAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGTCTAAAGGGTAGCCTGCAACAGGAGTATATGTCTTCCAGTGC  800

seq1  TTCTAGGAAAGGATCCTTCCTTTCCTCTTGTAGCTTCTGATGCCCCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAAGGATCCTTCCTTTCCTCTTGTAGCTTCTGATGCCCCCAGG  850

seq1  CCATCACTTGTTTTTTCTTAGAGCATCAACTTCCAATTCTATCTCATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTTGTTTTTTCTTAGAGCATCAACTTCCAATTCTATCTCATAAG  900

seq1  GGCCTCTCTTTCTCCTCTTATCCTTTTGAGTTTCTCTTCAACGTAATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTTTCTCCTCTTATCCTTTTGAGTTTCTCTTCAACGTAATAAG  950

seq1  TTATAATAGAATTATTGTTATTAATTATTCTTATTTACTGAATTTGAGAT  1000
      |||| |||||| |||||||||| |||||||||||||||||||||||||||
seq2  TTAT-ATAGAA-TATTGTTATT-ATTATTCTTATTTACTGAATTTGAGAT  997

seq1  CCACTCAAATAACTCAGGAGGATTTTATCCCAAAATTTTTAATTTAATTA  1050
      || |||||   ||||| |||||||||||||||||  ||||||||| ||||
seq2  CCCCTCAA--TACTCA-GAGGATTTTATCCCAAA--TTTTAATTT-ATTA  1041

seq1  TATCTGCAAGTCCCCCTTTTCCAAAAATTTGAGGGCTTTGTTTTTGTTTC  1100
      ||||||| ||||| |  ||||   |||||||||||| ||||||||||   
seq2  TATCTGC-AGTCCTC--TTTC---AAATTTGAGGGC-TTGTTTTTGT---  1081

seq1  TTTTTGTTCAGGGTAGGTACTTCAAATATTTCAAACCAGCTTATC  1145
      | ||||||||  ||| |||||   |||||||  ||||||||||||
seq2  TCTTTGTTCA--GTA-GTACT--CAATATTT-TAACCAGCTTATC  1120

seq1: chr14_123895202_123896344
seq2: B6Ng01-109B12.g_68_1209 (reverse)

seq1  AAAGAGTCTATTATAACTTTTCAATTTTCTGAGACCCACACTTAAGCACA  50
      |||| ||||||  |||||||||||  ||||||  ||  |||| | |||||
seq2  AAAGGGTCTAT--TAACTTTTCAA-ATTCTGAAGCCACCACTAAGGCACA  47

seq1  CATTC-AAGAG-ACTTTCTAAATGGTTTCATAATAAT-GTGTGAG-AATC  96
      || || ||||| ||||||||||| ||||||||||||| ||||||| ||||
seq2  CAATCAAAGAGAACTTTCTAAATTGTTTCATAATAATGGTGTGAGAAATC  97

seq1  TTGCCTCACTGCC-AAAACAACAGAAGAGTACACAGTGTGCATTCATGCA  145
      | ||||||||||| ||||||||||||||||||||||||||   |||||||
seq2  TGGCCTCACTGCCAAAAACAACAGAAGAGTACACAGTGTGGCATCATGCA  147

seq1  TCTAGTATCCACACTGGATTTGTCTTCATATTTGATACTTTTTATTGTTT  195
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  TCTAGTATCCACACTGGATTTGTC-TCATATTTGATACTTTTTA-TGTTT  195

seq1  CATATTTATAAACAAGTGACTCATACTTTAGAAATGTAAGAGATTTTAAA  245
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATATTTATAAACAAGTGACTCATACTTTAGAAATGTAAGAGA-TTTAAA  244

seq1  AAATCATTTAGAATAATTAGCCAATAAGTGGGCAAGTGAAATGTTAGCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTAGAATAATTAGCCAATAAGTGGGCAAGTGAAATGTTAGCAA  294

seq1  TTTGAAAATTGCTTATGAATCTGCAGAAATTTATAAGTGGCTAATGTTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATTGCTTATGAATCTGCAGAAATTTATAAGTGGCTAATGTTTG  344

seq1  AAAAGATGTCTGCATTTAACAACTGCCATCAGAAGGATGGAAATTTATGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTCTGCATTTAACAACTGCCATCAGAAGGATGGAAATTTATGT  394

seq1  ATGTTGCTATTTATGTGTGCTGTCATTGGCCTGTTTGCCTCATTGTTCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCTATTTATGTGTGCTGTCATTGGCCTGTTTGCCTCATTGTTCAG  444

seq1  GTCCCCTGAGTGCCATATTCCAGCACCTCCACCTAGATGGGTCTTGTATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGAGTGCCATATTCCAGCACCTCCACCTAGATGGGTCTTGTATA  494

seq1  TATTTCAGCAGAGTCTAGCCAGAAGAGTTCTCCTAATCTGCTAACCCCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGCAGAGTCTAGCCAGAAGAGTTCTCCTAATCTGCTAACCCCCA  544

seq1  CACATCTTCTTCAGCCCCCAAGATTTTCCCAGGTCCCATATCCAGTGTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCTTCAGCCCCCAAGATTTTCCCAGGTCCCATATCCAGTGTTT  594

seq1  CTACCTCATCTAGCTACCCTTGGTTACACTGGTCCCATCCCACAGACTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCATCTAGCTACCCTTGGTTACACTGGTCCCATCCCACAGACTTC  644

seq1  AGCCAAGACATTGTCTGCCCACTCCCAGATACATCATGTGCCACATTTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGACATTGTCTGCCCACTCCCAGATACATCATGTGCCACATTTAA  694

seq1  CCTCTTGACTCAACCAAGAACTGTAAATATTTACCCTAGATCCTAGCTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGACTCAACCAAGAACTGTAAATATTTACCCTAGATCCTAGCTCA  744

seq1  ATTAATCCAAATGATCTTCCCTCCTTACAATATGCTCAACCCTCAGATCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCCAAATGATCTTCCCTCCTTACAATATGCTCAACCCTCAGATCT  794

seq1  ACCCAGGGTTGGGCCATGATGAACATTATGCATGACAGCCCAAGACCCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGTTGGGCCATGATGAACATTATGCATGACAGCCCAAGACCCTC  844

seq1  TGTCTAATTGACCTCATTCCACTTAAGTTATACCCAACATTTAGACCCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTGACCTCATTCCACTTAAGTTATACCCAACATTTAGACCCAA  894

seq1  AACAGCCTGAAAATCCTGTGTTCTGCCACAACCTGCTCTGTTGATTCAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTGAAAATCCTGTGTTCTGCCACAACCTGCTCTGTTGATTCAGA  944

seq1  TACAGAGCTAACAAAAGGAGAACACATGCCCAGATATCATTGTGGAAAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCTAACAAAAGGAGAACACATGCCCAGATATCATTGTGGAAAAA  994

seq1  TATGCTATCAATATTAAAGTTTGAAACAGTATCTTCCACAACTCCTGAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATCAATATTAAAGTTTGAAACAGTATCTTCCACAACTCCTGAAG  1044

seq1  CCAACCAGTCCTATAGAATTTTCTTCAATGAAAATTACCTTACTAAATCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGTCCTATAGAATTTTCTTCAATGAAAATTACCTTACTAAATCC  1094

seq1  TGTGACATAAAATTTAAAATATAAATCATAAACTTCCTTAAAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATAAAATTTAAAATATAAATCATAAACTTCCTTAAAGAATTC  1142