BAC Information

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BAC

Clone NameB6Ng01-109H01
Chromosome14 (Build37)
Map Location 20,657,510 - 20,658,665
singlet/doubletsinglet
Overlap geneLOC100039534
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik
Downstream geneGng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109H01.bB6Ng01-109H01.g
ACCDH916348DH916349
length7521,132
definitionDH916348|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H01, 5' end.DH916349|Mus musculus domesticus DNA, BAC clone: B6Ng01-109H01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttttaatcttgtaaaacagaaaattggtaactattaaacaata
tttctccttttctctgtagctcaggccctatgaggaaccatcacgatgga
gagggaatcacacaatgtttcatgatgaacttaattcatcttctatactg
tctccaaggttgttgtagcacatgtgagaatctcctacattttaagttga
ataacatttcataccatatatccatcccatgttgattgtccattcatcct
ttgatgaatacttggaccagtttttggctattacaaacaatgctgctatg
aatataggtgtgtagagtccctggcttctgtgttttttgaggagccacca
tattgtttcctatagcagctatacaacttgacactgctccagtgcgacaa
aatggttctagttcacttgacttttcaccagtggctgtggctgattcttt
ttggttatttgttttgataattgcccccctatggtgaggtggagtctctt
tgtgattggatttgctttttcctggctatggccgcagagtctcaaatact
tccaaccccatcttgcaaaagtggacctcatgtgattgacattttcccaa
tgatttttatttttcatttgcttttggccactggtgtatcttctttgaag
aaatggccatttaaatactttccaattttgaatttgattcttcttaaaaa
tttttgttttgttttgtttgttttacttcttaaattatgtatggtggggt
gt
gaattccaggacagccagggctatacagagaaaccctgtctcgaaaaaac
gaaacaaaaacaacgacaaaaacaaacaaacaaaaaaaaaatcccaacct
caaacaaagaacaaaacagcaaaaataattttagccgggcatggtggcgc
acacctttaatcccagcacttgggaggcagagccaggcggatttctgagt
tggaggccagcctgatctacaaagtgagttccaggacagccagggctaca
cagagaaaccctgtctcgaaaaaacaaacaaaagaaaaaacaaaaacaaa
aaacaaaaaaaggaaagagagagagagagagagagagagagagagagaga
gagagagagagccactggacaatggtgtgaaccttgtcctttgcaggtgt
cagaaatccatggcacctggaacagatgcctcagaactgccagaaaccca
tcagaccacacattttcaagctggatatagtgatgtacctctgtaatccc
agcacgcaggaggctgaggcaggaggattgtaagtttaaggtcagctttg
agcagcaaaaccctgcctgaaaaaatgaagtgaagaagtacccactcccc
agcctccaccacgcctcagacttgttaaatgaaacctgggccacaggcct
gagaatggctaccacaagctgagtgagcttcccattgaaatgactaaggt
aacactacctgattccgttgtgtgtgtgcttagacggttctcagcccttc
ccacaaaggccacgtatcccttggcaacacgtttgagatctccatggcct
tgactacggtccagatgtgctgaacagagtaattggcgagttatgtctaa
aatacctattaagctctgccaggagtgaatgtttcaagtttactctgacg
ctcatataatgtatctgtgtggtttgccttaaaagctctgtatccttgag
ctcaggcaccaaaaataatttagaggctcaggcccctctttggtctggta
ttaaataaagacttaaatattgttctaatcagtatgtgtcagtagtatct
cattgtgactaaattggaagcacacagatttccacctctgctctatgaga
ctctacctggctctgcctctcttgcaggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_20657510_20658665
seq2: B6Ng01-109H01.g_67_1198

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAAC  50

seq1  GAAACAAAAACAACGACAAAAACAAACAAACAAAAAAAAAATCCCAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAACAACGACAAAAACAAACAAACAAAAAAAAAATCCCAACCT  100

seq1  CAAACAAAGAACAAAACAGCAAAAATAATTTTAGCCGGGCATGGTGGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAGAACAAAACAGCAAAAATAATTTTAGCCGGGCATGGTGGCGC  150

seq1  ACACCTTTAATCCCAGCACTTGGGAGGCAGAGCCAGGCGGATTTCTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAATCCCAGCACTTGGGAGGCAGAGCCAGGCGGATTTCTGAGT  200

seq1  TGGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCAGCCTGATCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACA  250

seq1  CAGAGAAACCCTGTCTCGAAAAAACAAACAAAAGAAAAAACAAAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAAACAAACAAAAGAAAAAACAAAAACAAA  300

seq1  AAACAAAAAAAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  350
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAAGGAA--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  348

seq1  GAGAGAGAGAGAGCCACTGGACAATGGTGTGAACCTTGTCCTTTGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGCCACTGGACAATGGTGTGAACCTTGTCCTTTGCAGGT  398

seq1  GTCAGAAATCCATGGCACCTGGAACAGATGCCTCAGAACTGCCAGAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAATCCATGGCACCTGGAACAGATGCCTCAGAACTGCCAGAAACC  448

seq1  CATCAGACCACACATTTTCAAGCTGGATATAGTGATGTACCTCTGTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACCACACATTTTCAAGCTGGATATAGTGATGTACCTCTGTAATC  498

seq1  CCAGCACGCAGGAGGCTGAGGCAGGAGGATTGTAAGTTTAAGGTCAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACGCAGGAGGCTGAGGCAGGAGGATTGTAAGTTTAAGGTCAGCTT  548

seq1  TGAGCAGCAAAACCCTGCCTGAAAAAATGAAGTGAAGAAGTACCCACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCAAAACCCTGCCTGAAAAAATGAAGTGAAGAAGTACCCACTCC  598

seq1  CCAGCCTCCACCACGCCTCAGACTTGTTAAATGAAACCTGGGCCACAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCCACCACGCCTCAGACTTGTTAAATGAAACCTGGGCCACAGGC  648

seq1  CTGAGAATGGCTACCACAAGCTGAGTGAGCTTCCCATTGAAATGACTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATGGCTACCACAAGCTGAGTGAGCTTCCCATTGAAATGACTAAG  698

seq1  GTAACACTACCTGATTCCGTTGTGTGTGTGCTTAGACGGTTCTCAGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTACCTGATTCCGTTGTGTGTGTGCTTAGACGGTTCTCAGCCCT  748

seq1  TCCCACAAAGGCCACGTATCCCTTGGCAACACGTTTGAGATCTCCATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAAAGGCCACGTATCCCTTGGCAACACGTTTGAGATCTCCATGGC  798

seq1  CTTGACTACGGTCCAGATGTGCTGAACAGAGTAATTGGCGAGTTATGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTACGGTCCAGATGTGCTGAACAGAGTAATTGGCGAGTTATGTCT  848

seq1  AAAATACCTATTAAGCTCTGCCAGGAGTGAATGTTTCAAGTTTACTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCTATTAAGCTCTGCCAGGAGTGAATGTTTCAAGTTTACTCTGA  898

seq1  CGCTCATATAAATGTATCTGTGTGGTTTTGCCTTAAAAGCTCTGTATCCC  950
      ||||||||| ||||||||||||||| ||||||||||||||||||||||| 
seq2  CGCTCATAT-AATGTATCTGTGTGG-TTTGCCTTAAAAGCTCTGTATCCT  946

seq1  TGAGCTCAGGCACCAAGAGACATTTTGAAGGGCTCAAGCCCCTCTTTGGT  1000
      |||||||||||||||| |   |||| ||  |||||| |||||||||||||
seq2  TGAGCTCAGGCACCAAAAATAATTTAGA--GGCTCAGGCCCCTCTTTGGT  994

seq1  CTGGTTATTAATAAAAGGACTTAAAATTATTGTCTAAATCAGTATGGTTG  1050
      |||||  | ||||||  ||||||||  ||||||   ||||||||||  ||
seq2  CTGGTATTAAATAAA--GACTTAAA--TATTGTTCTAATCAGTATG--TG  1038

seq1  TCAGTAAGTATCTCATGTGGATCATAAAATTGGAAGCCACACGAGATTTC  1100
      ||||| |||||||||| ||  | |  |||||||||| ||||| |||||||
seq2  TCAGT-AGTATCTCAT-TG--TGACTAAATTGGAAG-CACAC-AGATTTC  1082

seq1  CCACCCTCTGCTCCATGAGACTCAACCTCGCTCCTGGCCTTCCTCGTGCA  1150
      |   ||||||||| ||||||||| |||| ||||   ||||  ||| ||||
seq2  C--ACCTCTGCTCTATGAGACTCTACCTGGCTC--TGCCT--CTCTTGCA  1126

seq1  GGAGGG  1156
      ||||||
seq2  GGAGGG  1132