BAC Information

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BAC

Clone NameB6Ng01-109I03
Chromosome14 (Build37)
Map Location 55,508,267 - 55,637,513
singlet/doubletdoublet
Overlap genePabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn
Upstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2
Downstream geneZfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I03.bB6Ng01-109I03.g
ACCDH916397DH916398
length9641,121
definitionDH916397|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I03, 5' end.DH916398|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,636,552 - 55,637,513)(55,508,267 - 55,509,413)
sequence
gaattccaggacagccagagctacatggtgagaccctgtttcaaaacaaa
caataaacaagacagtttgtgcctgtaatcttagaaatgaagaggtgaag
gcaggaggatcattgtaagttcaaggccagtcagggtgacatagagagac
tgtttcaaaggcccagcagagctttccagttcacgccagtaaagcaggca
agggttggcatctactgacactaataatccccaaagaagttctataaatt
tttgatttttttctttaaattttaatttgaaagctagcctatttcactgc
acatcagagaatctaaaatccagcacttgaaaggtggagaagtaaggtca
caagttcaaagctaatccatgtttcatagcaggctcatgtctaaacaaac
aaacaagcaaaccagaacgaggagggaaaaaaggtccaaggaagagcgga
agctcccacatctcattttcagatacatcatcttcacagtgtggtgtctc
aaattcggatgcatctttcagtcaatgggttctcatcacagattagtggc
atttttatccgcaagtgatgcattccaaaagtgccaatgaatgtttgcaa
tggcagagcactgaatcctatatacactgtttcttcccaatcattttatg
caaataataaaccttcatttacaaccaagtgtaagagattgacaacaact
agcaatatcaaatacctcaattatatttctaaaataaattattttaaact
ttaggaggtgtaactgaaactttacattcagtattttcagactgatgtta
atctcaagtaactgaagtgacaggaacgaagcttggggacttctgtatat
aaagtctcaccacggtccaaactgacatcatctaagactgtaagaacaaa
agagcaactccctcggctgtcctacatggctgctcaagtgacgactccat
tcttacgtcttacc
gaattctttgaaaattaaaaaaaaatccttaaatgtggttacggggaata
accataaaataataatatataactaatcgataacctataaatatatccca
aagctggatgtggtgctgccagtttataattctagcttttgggaaataag
aggcaggatcagtgccactgtggcttatataagaccctgttcaacacaca
cacacacacacacacacacacacacacacacacacacacacacaccagaa
attttgaccagaaagcataatataatggttgctcttcattcatcatctct
agagaaaaatgatcaaatatttcctgtgtatttaacccagttctaggctc
acaggcaaagagaatgggaagacatatctcagctcacatgttgctcttac
actccagtagggggtcaaacaataaataaatctcataactatgttagaag
gtagtaaatactatgaggaaagatgcctggtgacacacatctttcatcgt
agtgttagggaggcagctgctaggcagctctgcaagttcaagaccagcct
ggcctacgtgtgagaccctgtttaaagatactatttttaaataacaggat
gaaggatagaaatatgtagattctctaattttaaatcaaatgatcaggga
aatcctcatgtctaagatgacaagtaaaactacgaattacggtataactg
aaggtatctactagcacttaaacatttttatattttcctataaaacttat
ataggttagaaaatagaatgtgatagtgtgaagtcttcagcaagagcaga
caaagatcccatttgtggtttgtctgatgggcaggttttgttctttctgc
tgtcatattttctgactggggtggggggtaataaatataagcaaatctga
tagagcaactgaaagcaagtttttagataaaaagttgttaaaacataacc
agccagcttggtgtggggcatatatacctgcaatctcacattcaaggatg
ggaggggtccctgaagttggaggttgatctgctcatcataggtggagccg
ccagggctactttgacgaaccctatcaaaaatagcccaccatggggtggc
gatgacctgtacagtccttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55636552_55637513
seq2: B6Ng01-109I03.b_48_1011 (reverse)

seq1  GGTAAGACGTAAGAATGGAGTCGTCACTTTGAGCAGCCATGTAGGACAGC  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTAAGACGTAAGAATGGAGTCGTCAC-TTGAGCAGCCATGTAGGACAGC  49

seq1  CGA-GGAGTTGCTCTTTTGTTTCTTACAGTCTTAGATGATGTCAGTTTGG  99
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGAGGGAGTTGCTCTTTTG-TTCTTACAGTCTTAGATGATGTCAGTTTGG  98

seq1  ACCGTGGTGACGACTTTATATACAGAAGTCCCC-AGCTTCGTTTCCTGTC  148
      |||||||||| |||||||||||||||||||||| ||||||| ||||||||
seq2  ACCGTGGTGA-GACTTTATATACAGAAGTCCCCAAGCTTCG-TTCCTGTC  146

seq1  ACTTCAGTTACCTGAGATTAACATCAGTCTGAAAATACTGAATGTAAAGT  198
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTTACTTGAGATTAACATCAGTCTGAAAATACTGAATGTAAAGT  196

seq1  TTCAGTTACACCTCCT-AAGTTTAAAATAATTTATTTTAG-AATATAATT  246
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  TTCAGTTACACCTCCTAAAGTTTAAAATAATTTATTTTAGAAATATAATT  246

seq1  GAGGTATTTGATATTGCTAGTTGTTGTCAATCTCTTACACTTGGTTGTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTTGATATTGCTAGTTGTTGTCAATCTCTTACACTTGGTTGTAA  296

seq1  ATGAAGGTTTATTATTTGCAT-AAATGATTGGGAAG-AACAGTGTATATA  344
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ATGAAGGTTTATTATTTGCATAAAATGATTGGGAAGAAACAGTGTATATA  346

seq1  GGATTCAGTGCTCTGCCATTGCAAACATTCATTGGCACTTTTGGAATGCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGTGCTCTGCCATTGCAAACATTCATTGGCACTTTTGGAATGCA  396

seq1  TCACTTGCGGATAAAAATGCCACTAATCTGTGATGAGAACCCATTGACTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCGGATAAAAATGCCACTAATCTGTGATGAGAACCCATTGACTG  446

seq1  AAAGATGCATCCGAATTTGAGACACCACACTGTGAAGATGATGTATCTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGCATCCGAATTTGAGACACCACACTGTGAAGATGATGTATCTGA  496

seq1  AAATGAGATGTGGGAGCTTCCGCTCTTCCTTGGACCTTTTTTCCCTCCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGATGTGGGAGCTTCCGCTCTTCCTTGGACCTTTTTTCCCTCCTC  546

seq1  GTTCTGGTTTGCTTGTTTGTTTGTTTAGACATGAGCCTGCTATGAAACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTTTGCTTGTTTGTTTGTTTAGACATGAGCCTGCTATGAAACAT  596

seq1  GGATTAGCTTTGAACTTGTGACCTTACTTCTCCACCTTTCAAGTGCTGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGCTTTGAACTTGTGACCTTACTTCTCCACCTTTCAAGTGCTGGA  646

seq1  TTTTAGATTCTCTGATGTGCAGTGAAATAGGCTAGCTTTCAAATTAAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTCTCTGATGTGCAGTGAAATAGGCTAGCTTTCAAATTAAAAT  696

seq1  TTAAAGAAAAAAATCAAAAATTTATAGAACTTCTTTGGGGATTATTAGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAAAAATCAAAAATTTATAGAACTTCTTTGGGGATTATTAGTG  746

seq1  TCAGTAGATGCCAACCCTTGCCTGCTTTACTGGCGTGAACTGGAAAGCTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGATGCCAACCCTTGCCTGCTTTACTGGCGTGAACTGGAAAGCTC  796

seq1  TGCTGGGCCTTTGAAACAGTCTCTCTATGTCACCCTGACTGGCCTTGAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCCTTTGAAACAGTCTCTCTATGTCACCCTGACTGGCCTTGAAC  846

seq1  TTACAATGATCCTCCTGCCTTCACCTCTTCATTTCTAAGATTACAGGCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGATCCTCCTGCCTTCACCTCTTCATTTCTAAGATTACAGGCAC  896

seq1  AAACTGTCTTGTTTATTGTTTGTTTTGAAACAGGGTCTCACCATGTAGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTCTTGTTTATTGTTTGTTTTGAAACAGGGTCTCACCATGTAGCT  946

seq1  CTGGCTGTCCTGGAATTC  962
      ||||||||||||||||||
seq2  CTGGCTGTCCTGGAATTC  964

seq1: chr14_55508267_55509413
seq2: B6Ng01-109I03.g_67_1187

seq1  GAATTCTTTGAAAATTAAAAAAAAATCCTTAAATGTGGTTACGGGGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAAAATTAAAAAAAAATCCTTAAATGTGGTTACGGGGAATA  50

seq1  ACCATAAAATAATAATATATAACTAATCGATAACCTATAAATATATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAAATAATAATATATAACTAATCGATAACCTATAAATATATCCCA  100

seq1  AAGCTGGATGTGGTGCTGCCAGTTTATAATTCTAGCTTTTGGGAAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGATGTGGTGCTGCCAGTTTATAATTCTAGCTTTTGGGAAATAAG  150

seq1  AGGCAGGATCAGTGCCACTGTGGCTTATATAAGACCCTGTTCAACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGATCAGTGCCACTGTGGCTTATATAAGACCCTGTTCAACACACA  200

seq1  CACACACACACACACACACACACACACACACACACACACACACACCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACCAGAA  250

seq1  ATTTTGACCAGAAAGCATAATATAATGGTTGCTCTTCATTCATCATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACCAGAAAGCATAATATAATGGTTGCTCTTCATTCATCATCTCT  300

seq1  AGAGAAAAATGATCAAATATTTCCTGTGTATTTAACCCAGTTCTAGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAATGATCAAATATTTCCTGTGTATTTAACCCAGTTCTAGGCTC  350

seq1  ACAGGCAAAGAGAATGGGAAGACATATCTCAGCTCACATGTTGCTCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAAGAGAATGGGAAGACATATCTCAGCTCACATGTTGCTCTTAC  400

seq1  ACTCCAGTAGGGGGTCAAACAATAAATAAATCTCATAACTATGTTAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTAGGGGGTCAAACAATAAATAAATCTCATAACTATGTTAGAAG  450

seq1  GTAGTAAATACTATGAGGAAAGATGCCTGGTGACACACATCTTTCATCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAATACTATGAGGAAAGATGCCTGGTGACACACATCTTTCATCGT  500

seq1  AGTGTTAGGGAGGCAGCTGCTAGGCAGCTCTGCAAGTTCAAGACCAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGGGAGGCAGCTGCTAGGCAGCTCTGCAAGTTCAAGACCAGCCT  550

seq1  GGCCTACGTGTGAGACCCTGTTTAAAGATACTATTTTTAAATAACAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACGTGTGAGACCCTGTTTAAAGATACTATTTTTAAATAACAGGAT  600

seq1  GAAGGATAGAAATATGTAGATTCTCTAATTTTAAATCAAATGATCAGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATAGAAATATGTAGATTCTCTAATTTTAAATCAAATGATCAGGGA  650

seq1  AATCCTCATGTCTAAGATGACAAGTAAAACTACGAATTACGGTATAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCATGTCTAAGATGACAAGTAAAACTACGAATTACGGTATAACTG  700

seq1  AAGGTATCTACTAGCACTTAAACATTTTTATATTTTCCTATAAAACTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATCTACTAGCACTTAAACATTTTTATATTTTCCTATAAAACTTAT  750

seq1  ATAGGTTAGAAAATAGAATGTGATAGTGTGAAGTCTTCAGCAAGAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTAGAAAATAGAATGTGATAGTGTGAAGTCTTCAGCAAGAGCAGA  800

seq1  CAAAGATCCCATTTGTGGTTTTGTCTGATGGGCAGGTTTTGTTCTTTCTG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAAAGATCCCATTTGTGG-TTTGTCTGATGGGCAGGTTTTGTTCTTTCTG  849

seq1  CTGTCAGTATTTTCTGACTGGGGTGGGGGATAATAAATATAAGCAAATCT  900
      |||||| |||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGTCA-TATTTTCTGACTGGGGTGGGGGGTAATAAATATAAGCAAATCT  898

seq1  GATAGAGCAACTGAAAGCAAGTTTTTTAGATAAAAAGTTGTTAAAAACAT  950
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  GATAGAGCAACTGAAAGCAAG-TTTTTAGATAAAAAGTTGTT-AAAACAT  946

seq1  AACCAGTCAAGCTTGGTGATGGGCATATATACTTGCAATCTCAACATTCA  1000
      |||||| | |||||||||  |||||||||||| ||||||||| |||||||
seq2  AACCAG-CCAGCTTGGTGTGGGGCATATATACCTGCAATCTC-ACATTCA  994

seq1  AGGGATGGGAGGGGTCACTGAAAGTTGGAGGTTGATCTGTCTACATAATG  1050
      | |||||||||||||| ||| |||||||||||||||||| || ||| || 
seq2  A-GGATGGGAGGGGTCCCTG-AAGTTGGAGGTTGATCTG-CT-CATCATA  1040

seq1  AGTTGTAAGCCAGCCAGGGCTACTTAGACAGACCCTTTATCAAAAGATTA  1100
       || |  |||| ||||||||||||| |||  ||||  |||||||  | ||
seq2  GGTGG--AGCC-GCCAGGGCTACTTTGACGAACCC--TATCAAA--AATA  1083

seq1  GCCACTCAGTGGGCTGTCGAGATGACTCAGTGGGTTACAGTCCTTGC  1147
      ||| | |  ||||  || | ||||||    ||   ||||||||||||
seq2  GCC-CACCATGGG--GTGGCGATGAC---CTG---TACAGTCCTTGC  1121