BAC Information

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BAC

Clone NameB6Ng01-109L11
Chromosome14 (Build37)
Map Location 29,763,022 - 29,886,566
singlet/doubletdoublet
Overlap geneCacna2d3, Lrtm1
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream genePpia-ps15, EG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L11.bB6Ng01-109L11.g
ACCDH916548DH916549
length1,114402
definitionDH916548|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L11, 5' end.DH916549|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,885,437 - 29,886,566)(29,763,022 - 29,763,429)
sequence
gaattctctagacaaatgtatgccaagcaaagaattgacctttatagtct
ccaaatcggaagaaaggcgaatagccagggctgacgttaaagtccttata
ttgccacccacagggctgatctcaggtacctgatgtttcctcacagctca
cactcagcaagcaggccctaggaggataaagatgcccaggttgataactt
tacgaccatttgtctgactttctcctcttccctatgctagtatgaagaag
gaaaaaaacggaggaaacccaactacagtagtgtggatctctctgaagtc
gagtgggaagaccgggatgatgtggtaagtgaccctttgcagccctcatt
gtcaaggacaatactgaccataaaagataggccagaggacagcagagggc
tgtgaagacaactgacccttcccttatggttggagttgtatagctcctcc
tgctagtctgctgagcctgtacccagcaggctctggattcctctacagct
gattcattccacttcatccccagtataattgtcaggacttgccttaccat
cttcagagaatcctgttgctgggcaacaggagacccagtaactacaaaga
catgccatctacaggccaataagacaggctcccagatggatagaatgaac
ttgttaggtctacgtggacacaactcttgtcaccaaagagtagcagagga
gtgtgagggctcaatttccccatgtgtggtcagcctcccagccccactgc
tacctccactcccagtcccctgtcctgtgcttctacctgtcccacgggat
gtcacaggaagccatttgacatcccagactatctcctcttgctttataga
aacagggctggcgtcctaactcccttgttgctgctttcttcattttcata
gcctctgcaatgtgaatggccttagctagcagaagctcaggttttctccc
ttgtctataaatgcaaagccatatctatacagaaatttacctagttctgt
ctggttaacccagctcagacaaataaattgtcattcataaaactactgcc
tcatcactcttctttttctatctgcactgcttgacatcatggagagtcat
tgaccagaagagtt
atgccactgtgccctgatctgtgccctccatcatggccaggacttctcga
tgctggcactacttgctcagctatccatttgttgtaggtgctgtcatgag
tgttgtagaatgtctagcagcatgttggtctctacccactagatgccagt
agcaagctatgacaatcaaaactgtccccagatattgcagtgactgctgg
gagacagagcttcccttcagttaaacagtacagctccagacaaagcaagg
atcacagtaatgggctcttaaaatatagaaaggaaaggaaaggaaaggaa
aggaaaggaaaggaaaggaaaggaaagggaaagggaaagggaaagggaaa
gggaaagggaaagggaaagggaaagggaaagggaaagggaaagggaaagg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29885437_29886566
seq2: B6Ng01-109L11.b_48_1161 (reverse)

seq1  AACTCTTCTTGGTCATTGACTCTCCATGATGTCAAAGCAGTGGCAGATAG  50
      |||||||| |||||| ||||||||||||||||| ||||||| ||||||||
seq2  AACTCTTC-TGGTCAATGACTCTCCATGATGTC-AAGCAGT-GCAGATAG  47

seq1  GAAAAGAAGAGTGGATGAGGCAGTAGTTTTTATTGAATGACAATTTTATT  100
       ||||||||||| |||||||||||||||||   |||||||||||||   |
seq2  AAAAAGAAGAGT-GATGAGGCAGTAGTTTT--ATGAATGACAATTT--AT  92

seq1  TTGTCTGAGCTTGGGTTTAACCAGACAGAACTAGGTAAAATTTCTGTAAT  150
      |||||||||||  || |||||||||||||||||||| |||||||||| ||
seq2  TTGTCTGAGCT--GGGTTAACCAGACAGAACTAGGT-AAATTTCTGT-AT  138

seq1  AGATATGGCTTTTGCATTTTATAGACAAGGGAGAAAAACCTGAGCTTTCT  200
      ||||||||| |||||| |||||||||||||||| ||||||||||| ||||
seq2  AGATATGGC-TTTGCA-TTTATAGACAAGGGAG-AAAACCTGAGC-TTCT  184

seq1  GCTAGCTAAGGCCATTCACATTGCAGAGGCTATGAAAATGAAGAAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTAAGGCCATTCACATTGCAGAGGCTATGAAAATGAAGAAAGCAG  234

seq1  CAACAAGGGAGTTAGGACGCCAGCCCTGTTTCTATAAAGCAAGAGGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGGAGTTAGGACGCCAGCCCTGTTTCTATAAAGCAAGAGGAGAT  284

seq1  AGTCTGGGATGTCAAATGGCTTCCTGTGACATCCCGTGGGACAGGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGATGTCAAATGGCTTCCTGTGACATCCCGTGGGACAGGTAGAA  334

seq1  GCACAGGACAGGGGACTGGGAGTGGAGGTAGCAGTGGGGCTGGGAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGACAGGGGACTGGGAGTGGAGGTAGCAGTGGGGCTGGGAGGCTG  384

seq1  ACCACACATGGGGAAATTGAGCCCTCACACTCCTCTGCTACTCTTTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACATGGGGAAATTGAGCCCTCACACTCCTCTGCTACTCTTTGGTG  434

seq1  ACAAGAGTTGTGTCCACGTAGACCTAACAAGTTCATTCTATCCATCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTTGTGTCCACGTAGACCTAACAAGTTCATTCTATCCATCTGGG  484

seq1  AGCCTGTCTTATTGGCCTGTAGATGGCATGTCTTTGTAGTTACTGGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCTTATTGGCCTGTAGATGGCATGTCTTTGTAGTTACTGGGTCT  534

seq1  CCTGTTGCCCAGCAACAGGATTCTCTGAAGATGGTAAGGCAAGTCCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGCCCAGCAACAGGATTCTCTGAAGATGGTAAGGCAAGTCCTGAC  584

seq1  AATTATACTGGGGATGAAGTGGAATGAATCAGCTGTAGAGGAATCCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTGGGGATGAAGTGGAATGAATCAGCTGTAGAGGAATCCAGAG  634

seq1  CCTGCTGGGTACAGGCTCAGCAGACTAGCAGGAGGAGCTATACAACTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGGTACAGGCTCAGCAGACTAGCAGGAGGAGCTATACAACTCCA  684

seq1  ACCATAAGGGAAGGGTCAGTTGTCTTCACAGCCCTCTGCTGTCCTCTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAGGGAAGGGTCAGTTGTCTTCACAGCCCTCTGCTGTCCTCTGGC  734

seq1  CTATCTTTTATGGTCAGTATTGTCCTTGACAATGAGGGCTGCAAAGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTTATGGTCAGTATTGTCCTTGACAATGAGGGCTGCAAAGGGTC  784

seq1  ACTTACCACATCATCCCGGTCTTCCCACTCGACTTCAGAGAGATCCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCACATCATCCCGGTCTTCCCACTCGACTTCAGAGAGATCCACAC  834

seq1  TACTGTAGTTGGGTTTCCTCCGTTTTTTTCCTTCTTCATACTAGCATAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAGTTGGGTTTCCTCCGTTTTTTTCCTTCTTCATACTAGCATAGG  884

seq1  GAAGAGGAGAAAGTCAGACAAATGGTCGTAAAGTTATCAACCTGGGCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGAAAGTCAGACAAATGGTCGTAAAGTTATCAACCTGGGCATC  934

seq1  TTTATCCTCCTAGGGCCTGCTTGCTGAGTGTGAGCTGTGAGGAAACATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTCCTAGGGCCTGCTTGCTGAGTGTGAGCTGTGAGGAAACATCA  984

seq1  GGTACCTGAGATCAGCCCTGTGGGTGGCAATATAAGGACTTTAACGTCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGAGATCAGCCCTGTGGGTGGCAATATAAGGACTTTAACGTCAG  1034

seq1  CCCTGGCTATTCGCCTTTCTTCCGATTTGGAGACTATAAAGGTCAATTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTATTCGCCTTTCTTCCGATTTGGAGACTATAAAGGTCAATTCT  1084

seq1  TTGCTTGGCATACATTTGTCTAGAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  TTGCTTGGCATACATTTGTCTAGAGAATTC  1114

seq1: chr14_29763022_29763429
seq2: B6Ng01-109L11.g_68_475

seq1  GAATTCATGCCACTGTGCCCTGATCTGTGCCCTCCATCATGGCCAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCACTGTGCCCTGATCTGTGCCCTCCATCATGGCCAGGACT  50

seq1  TCTCGATGCTGGCACTACTTGCTCAGCTATCCATTTGTTGTAGGTGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGATGCTGGCACTACTTGCTCAGCTATCCATTTGTTGTAGGTGCTGT  100

seq1  CATGAGTGTTGTAGAATGTCTAGCAGCATGTTGGTCTCTACCCACTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGTTGTAGAATGTCTAGCAGCATGTTGGTCTCTACCCACTAGAT  150

seq1  GCCAGTAGCAAGCTATGACAATCAAAACTGTCCCCAGATATTGCAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGCAAGCTATGACAATCAAAACTGTCCCCAGATATTGCAGTGAC  200

seq1  TGCTGGGAGACAGAGCTTCCCTTCAGTTAAACAGTACAGCTCCAGACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGACAGAGCTTCCCTTCAGTTAAACAGTACAGCTCCAGACAAA  250

seq1  GCAAGGATCACAGTAATGGGCTCTTAAAATATAGAAAGGAAAGGAAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGATCACAGTAATGGGCTCTTAAAATATAGAAAGGAAAGGAAAGGA  300

seq1  AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAAAGGGAAAGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGGAAAGGGAAAGGGAAA  350

seq1  GGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGG  400

seq1  GAAAGGGA  408
      ||||||||
seq2  GAAAGGGA  408