BAC Information

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BAC

Clone NameB6Ng01-109N08
Chromosome14 (Build37)
Map Location 25,622,700 - 25,623,679
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109N08.bB6Ng01-109N08.g
ACCDH916629DH916630
length1,209978
definitionDH916629|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N08, 5' end.DH916630|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttctatattccaggaaagtctttcatcagacacatggtggttt
gtgcacagttcctcttggtcgtagcttgtctttccctcttcccaatagga
tcggtggcagaggaaacacatttgatgatccaggatggtgatgctcagat
tacaagttttactttcatggctcacatgttggtgtccattccagaaattc
tgcacacagctaaatcctgggtgctttgcagaagttacatagttagcatt
tacaaaatccatttggagttgaattttatatatggtatgacatttatact
tgtgttcattattttaactatgactagccagccattctaatacctttcac
tgaaaattctccattaagttacctccacatcactgtcaaatgctagtgag
gcacatttgtttgggtctacttctgtaatctctagtctatctattgatct
attattgtctgagtctccactggtaccacattgcctttatcactgcagtt
acatttagactgaaataaggcataggattatttagcctactttattcctt
catcaagatcatttaacaagttgtagcctgtactttataaacaccatttt
gatcagaattgcattaaacttgtagattcatgtatagagatggctagcat
cttcacaatgttaaatgtcctaatctgtgaaaatagtgcatgtccccatt
taatcaagttttccttgttttatgtaaaacatatattaattacaaatttg
gccctacacacattttcttgatttttatattcaaatattccattttaggg
gggtgattatgagtgccatcatgcttctttatttttgttacagatgcctt
gtgcttctacacagacatgaggtccactttgtatatcctgatttttcatc
ctataacttttgatcaactcctatcttaactttttttctctttgtcctgc
gagatggatccttagattttatacatgtagaatcatgacatcttttagaa
aggcagacctaatgactttttgtttctttccctcacttttacaaggacac
atttccacatacattgggtgagaggtagacccagcgcttgcttgctcaga
ggtggagaagcggaaagttggctgcactgactaaggtagtctgcaagtgt
cttatagagtgaggatgttcgttccagtatccaacggcttaacagaaatg
ggttcgctt
gaattctcactgggtgaaaagttccagggcttgtttcccatctcaggcag
cagcttcacactctggagaagagacctgctgccatggagagacagggagg
ggtgggcaaggatttgggagtgatatttccatgaccttcctggaaaactc
tgtcacacctgctcactggggtgcaactgggagggatggtatttccccca
aacagcccaggttttccagtgatccccaggaggcctgcagggtgggaagg
ctgggttgcaaatgtcagcagagcgtgaaggacacagcagaggttgggtt
gccaggatttgctgtttcctcagcatctgcctcctatcctcatccctatg
gagtttccttggttttataattcactcgcttatctttctgcatgaggtga
atgtgtgtatgtgtgcatctctgtgtgcacatgtttgtgtttgtgtgtgc
acacgcatgcatgcatgcgtgcctgtggaggccagaagtcaatgctgcat
gtctttcctaatcgccttctgtcttactttttgaggcaggctctctcact
gagctcagtgactgaactagactggctggagcccagcaagccacagagac
tctcctgtctccaccacacctttctgcttggattacaggcacacaccgtc
acacctggctacaggcgtccatggtcacacctggctttctaccttggctc
tggtgagccaaactcaggttctcttgcttgtgtggtaaacacttggcctc
catgagacgggtgagggagtactttcctggcatagtgaattgaagttgtg
tagcccggaggatgggtgctgtatactttttgggcatgggatgggaggac
tggtggagaaataacaggtgcggctgactcctcccacgctccccactttc
tccttagtgaggtgtttccctccttctccccagcacagcagtggaaaata
actggcctgacttaccaggcctgtgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25622700_25623679
seq2: B6Ng01-109N08.g_68_1045

seq1  GAATTCTCACTGGGTGAAAAGTTCCAGGGCTTGTTTCCCATCTCAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGGGTGAAAAGTTCCAGGGCTTGTTTCCCATCTCAGGCAG  50

seq1  CAGCTTCACACTCTGGAGAAGAGACCTGCTGCCATGGAGAGACAGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCACACTCTGGAGAAGAGACCTGCTGCCATGGAGAGACAGGGAGG  100

seq1  GGTGGGCAAGGATTTGGGAGTGATATTTCCATGACCTTCCTGGAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAAGGATTTGGGAGTGATATTTCCATGACCTTCCTGGAAAACTC  150

seq1  TGTCACACCTGCTCACTGGGGTGCAACTGGGAGGGATGGTATTTCCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACACCTGCTCACTGGGGTGCAACTGGGAGGGATGGTATTTCCCCCA  200

seq1  AACAGCCCAGGTTTTCCAGTGATCCCCAGGAGGCCTGCAGGGTGGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCAGGTTTTCCAGTGATCCCCAGGAGGCCTGCAGGGTGGGAAGG  250

seq1  CTGGGTTGCAAATGTCAGCAGAGCGTGAAGGACACAGCAGAGGTTGGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTGCAAATGTCAGCAGAGCGTGAAGGACACAGCAGAGGTTGGGTT  300

seq1  GCCAGGATTTGCTGTTTCCTCAGCATCTGCCTCCTATCCTCATCCCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGATTTGCTGTTTCCTCAGCATCTGCCTCCTATCCTCATCCCTATG  350

seq1  GAGTTTCCTTGGTTTTATAATTCACTCGCTTATCTTTCTGCATGAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCTTGGTTTTATAATTCACTCGCTTATCTTTCTGCATGAGGTGA  400

seq1  ATGTGTGTATGTGTGCATCTCTGTGTGCACATGTTTGTGTTTGTGTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTATGTGTGCATCTCTGTGTGCACATGTTTGTGTTTGTGTGTGC  450

seq1  ACACGCATGCATGCATGCGTGCCTGTGGAGGCCAGAAGTCAATGCTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCATGCATGCATGCGTGCCTGTGGAGGCCAGAAGTCAATGCTGCAT  500

seq1  GTCTTTCCTAATCGCCTTCTGTCTTACTTTTTGAGGCAGGCTCTCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCTAATCGCCTTCTGTCTTACTTTTTGAGGCAGGCTCTCTCACT  550

seq1  GAGCTCAGTGACTGAACTAGACTGGCTGGAGCCCAGCAAGCCACAGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTGACTGAACTAGACTGGCTGGAGCCCAGCAAGCCACAGAGAC  600

seq1  TCTCCTGTCTCCACCACACCTTTCTGCTTGGATTACAGGCACACACCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTCTCCACCACACCTTTCTGCTTGGATTACAGGCACACACCGTC  650

seq1  ACACCTGGCTACAGGCGTCCATGGTCACACCTGGCTTTCTACCTTGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGCTACAGGCGTCCATGGTCACACCTGGCTTTCTACCTTGGCTC  700

seq1  TGGTGAGCCAAACTCAGGTTCTCTTGCTTGTGTGGTAAACACTTGGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCCAAACTCAGGTTCTCTTGCTTGTGTGGTAAACACTTGGCCTC  750

seq1  CATGAGACGGGTGAGGGAGTACTTTCCTGGCATAGTGAATTGAAGTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGACGGGTGAGGGAGTACTTTCCTGGCATAGTGAATTGAAGTTGTG  800

seq1  TAG-CCGGAGGATGGGTGCTGTATAC-TTTTGGGCATGGGATGGG-GGAC  847
      ||| |||||||||||||||||||||| |||||||||||||||||| ||||
seq2  TAGCCCGGAGGATGGGTGCTGTATACTTTTTGGGCATGGGATGGGAGGAC  850

seq1  TGGTGGAGAAATAGCAGGGTGCGGCTGACTCCTCCCACGCTCCCCACTTT  897
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  TGGTGGAGAAATAACA-GGTGCGGCTGACTCCTCCCACGCTCCCCACTTT  899

seq1  CTCCTTAGTGAGGGGTTTCCCTCCTCTCTCCCCCAGCAACAGCAGTGGAA  947
      ||||||||||||| ||||||||||| ||| ||||||| ||||||||||||
seq2  CTCCTTAGTGAGGTGTTTCCCTCCT-TCT-CCCCAGC-ACAGCAGTGGAA  946

seq1  AATAACTGCCCTGACCTTACCAGGCCTGTGCTC  980
      |||||||| ||||| ||||||||||||||||||
seq2  AATAACTGGCCTGA-CTTACCAGGCCTGTGCTC  978