BAC Information

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BAC

Clone NameB6Ng01-110A15
Chromosome14 (Build37)
Map Location 34,115,883 - 34,261,439
singlet/doubletdoublet
Overlap geneArhgap22, Mapk8, LOC100040079, LOC665681
Upstream geneOgdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657
Downstream geneFrmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A15.bB6Ng01-110A15.g
ACCDH916776DH916777
length8801,114
definitionDH916776|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A15, 5' end.DH916777|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,260,418 - 34,261,439)(34,115,883 - 34,117,005)
sequence
gaattctctataagttctacttattgctagtgctagtacactgcctttaa
gagaataggcaagcaataaaatatttactggagaaataagaaattaaaat
taaaaaattgctgagagataaaatggggggagaataaatgaatgagtgct
cacatttgcttcatgatagcatccctggagaaagaccattttaacatgta
atgggaacagtctacctgaatttactcaatacatatttgtatattttgga
aatcacagtatactacacaggtgtaagagagactgccctttatttcctac
tgtcaaagcaattgtcatactttttttccaagtttaatatactgtgcatg
taatatattttatataaacgtagaatcattctatatgtatgtgttgcttc
tttctcttagtgatattctccgttgttggcgagaatgcctttgaactctt
taaagtgctaaatatattttgcctcatgaatgatagtgatttaaatacct
ttccatccattgtcgaggctcgtcagtttatccgtgaatagttaatattt
gcgagagccgcaaggacttgcaggtaaatcaggtaaggcaaaaaatctgg
agcaggagggtttggggggtaaaaggaggtaacttcttccagggagctag
agaacatctactccttggtgggtggtaggccctttgaagagtatctgtca
aaccaggactctccgtggttcaggtgtgtgccctggcacgcgtgcctgac
cttcaaacactaaacccctcctccccgcgaggctagcaaccatgcaggct
taagctatgactggtgtttcgccgccacgcgccgtcacgtgccatcgcag
acccgcccctgctgctcccggcccgcccct
gaattcaacaccggtgctgatggaggccctggggtggctctccttcctac
cctctttccagaggctctgaagtcttgagacttcctaccaacctagtccc
agggactcaggagattttggctacagctagaaatattccactccctttat
agcctgttaaggtgtggcgcccagggatgttaggtgaaccacccgaggtc
aaacagctggcagaaggggacctgtacctccgaggtcagcctgccctggg
ctgagctttatgtgactaccgtttccaacagaggctccggacaggggcct
tgtggctagaaaaggaatagtaatgataaagttgaggtccagatggcaat
aagcactggaatttccactgtgacagagctgaggcaggaaaattaccatt
ttgaggccagcatggacaaagaaggaaggaacaaaagaagggaaggttga
gtgaccccacctgaaacaagagccaccaaggagccttctcactcaaactc
agtaacccgtgctatgggtctgatcttgagctggcctccagaggccctgg
tgaaagcagggtacaatctctgcccttaaagaatcaggggacaatgctta
ccatcctgatcttgagacaaggtaaataccttacttactaggttgaggct
aattacatggggacagaaacaggaagtatggctgtgaaggcccctgttgg
tatctcccagcactgaagcccggggcaggacaggaaaacggacagaggca
ttgccagtgctatggcctgagcctgggatagcccctcgttctgccctggg
tacctttcatcgcccaaggaggaaaacttgacagcccttggagatgtgat
tgttcttaagatgatcggctacttaagtttaattcatagagtctattgca
gccttcaatcctgtggaaagtgacagaaagaaatggtgtgagtgccacct
agtggacaacttgtcaatgcaacaccactcatgtgctgcatctcaagcta
ggtttcaagagccagagaccgcatgcccagtcaccgagcagtcataagaa
gacgtgtccttggggggaatgatgcaaggctcctatcgcctgactatggt
acttgctccatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_34260418_34261439
seq2: B6Ng01-110A15.b_47_926 (reverse)

seq1  AGGGGCGGGCCAGCCCCGGGGGCCCGGATTACGAGGGCGTGGCCCCGCGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGGGCGTGGCTACACTGGGGGGCGGGCTGCAGTAGCGGAGGTTTTCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGAGGGCGGGGCCGCGAGCAGCGTCTGGGCGGCCGCGTGTGAGGGGCGG  150
                                                |||||| |
seq2  ------------------------------------------AGGGGC-G  7

seq1  GGCCGGGAGCAGCAGGGGGCGGGTCTGCGATGGCACGTGGCGGCGCGTGG  200
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GGCCGGGAGCAGCA-GGGGCGGGTCTGCGATGGCACGTGACGGCGCGTGG  56

seq1  CGGCGAAACACCAGTCATAGCTTAAGCCTGCATGGTTGCTAGCCTCGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGAAACACCAGTCATAGCTTAAGCCTGCATGGTTGCTAGCCTCGCGG  106

seq1  GGAGGAGGGG-TTAGTGTTTGAAGGTCAGGCACGCGTGCCAGGGCACACA  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGGTTTAGTGTTTGAAGGTCAGGCACGCGTGCCAGGGCACACA  156

seq1  CCTGAACCACGGAGAGTCCTGGTTTGACAGATACTCTTC-AAGGGCCTAC  348
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGAACCACGGAGAGTCCTGGTTTGACAGATACTCTTCAAAGGGCCTAC  206

seq1  CACCCACCAAGGAGTAGATGTTCTCTAGCTCCCTGGAAGAAGTTACCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCAAGGAGTAGATGTTCTCTAGCTCCCTGGAAGAAGTTACCTCC  256

seq1  TTTTACCCCCCAAACCCTCCTGCTCCAGATTTTTTGCCTTACCTGATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCCCCAAACCCTCCTGCTCCAGATTTTTTGCCTTACCTGATTTA  306

seq1  CCTGCAAGTCCTTGCGGCTCTCGCAAATATTAACTATTCACGGATAAACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGTCCTTGCGGCTCTCGCAAATATTAACTATTCACGGATAAACT  356

seq1  GACGAGCCTCGACAATGGATGGAAAGGTATTTAAATCACTATCATTCATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGCCTCGACAATGGATGGAAAGGTATTTAAATCACTATCATTCATG  406

seq1  AGGCAAAATATATTTAGCACTTTAAAGAGTTCAAAGGCATTCTCGCCAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAATATATTTAGCACTTTAAAGAGTTCAAAGGCATTCTCGCCAAC  456

seq1  AACGGAGAATATCACTAAGAGAAAGAAGCAACACATACATATAGAATGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAGAATATCACTAAGAGAAAGAAGCAACACATACATATAGAATGAT  506

seq1  TCTACGTTTATATAAAATATATTACATGCACAGTATATTAAACTTGGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTTTATATAAAATATATTACATGCACAGTATATTAAACTTGGAAA  556

seq1  AAAAGTATGACAATTGCTTTGACAGTAGGAAATAAAGGGCAGTCTCTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGACAATTGCTTTGACAGTAGGAAATAAAGGGCAGTCTCTCTT  606

seq1  ACACCTGTGTAGTATACTGTGATTTCCAAAATATACAAATATGTATTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTGTAGTATACTGTGATTTCCAAAATATACAAATATGTATTGAG  656

seq1  TAAATTCAGGTAGACTGTTCCCATTACATGTTAAAATGGTCTTTCTCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCAGGTAGACTGTTCCCATTACATGTTAAAATGGTCTTTCTCCAG  706

seq1  GGATGCTATCATGAAGCAAATGTGAGCACTCATTCATTTATTCTCCCCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTATCATGAAGCAAATGTGAGCACTCATTCATTTATTCTCCCCCC  756

seq1  ATTTTATCTCTCAGCAATTTTTTAATTTTAATTTCTTATTTCTCCAGTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTCTCAGCAATTTTTTAATTTTAATTTCTTATTTCTCCAGTAA  806

seq1  ATATTTTATTGCTTGCCTATTCTCTTAAAGGCAGTGTACTAGCACTAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTGCTTGCCTATTCTCTTAAAGGCAGTGTACTAGCACTAGCA  856

seq1  ATAAGTAGAACTTATAGAGAATTC  1022
      ||||||||||||||||||||||||
seq2  ATAAGTAGAACTTATAGAGAATTC  880

seq1: chr14_34115883_34117005
seq2: B6Ng01-110A15.g_68_1181

seq1  GAATTCAACACCGGTGCTGATGGAGGCCCTGGGGTGGCTCTCCTTCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACCGGTGCTGATGGAGGCCCTGGGGTGGCTCTCCTTCCTAC  50

seq1  CCTCTTTCCAGAGGCTCTGAAGTCTTGAGACTTCCTACCAACCTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCCAGAGGCTCTGAAGTCTTGAGACTTCCTACCAACCTAGTCCC  100

seq1  AGGGACTCAGGAGATTTTGGCTACAGCTAGAAATATTCCACTCCCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCAGGAGATTTTGGCTACAGCTAGAAATATTCCACTCCCTTTAT  150

seq1  AGCCTGTTAAGGTGTGGCGCCCAGGGATGTTAGGTGAACCACCCGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTAAGGTGTGGCGCCCAGGGATGTTAGGTGAACCACCCGAGGTC  200

seq1  AAACAGCTGGCAGAAGGGGACCTGTACCTCCGAGGTCAGCCTGCCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGGCAGAAGGGGACCTGTACCTCCGAGGTCAGCCTGCCCTGGG  250

seq1  CTGAGCTTTATGTGACTACCGTTTCCAACAGAGGCTCCGGACAGGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTTATGTGACTACCGTTTCCAACAGAGGCTCCGGACAGGGGCCT  300

seq1  TGTGGCTAGAAAAGGAATAGTAATGATAAAGTTGAGGTCCAGATGGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTAGAAAAGGAATAGTAATGATAAAGTTGAGGTCCAGATGGCAAT  350

seq1  AAGCACTGGAATTTCCACTGTGACAGAGCTGAGGCAGGAAAATTACCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGGAATTTCCACTGTGACAGAGCTGAGGCAGGAAAATTACCATT  400

seq1  TTGAGGCCAGCATGGACAAAGAAGGAAGGAACAAAAGAAGGGAAGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAGCATGGACAAAGAAGGAAGGAACAAAAGAAGGGAAGGTTGA  450

seq1  GTGACCCCACCTGAAACAAGAGCCACCAAGGAGCCTTCTCACTCAAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCACCTGAAACAAGAGCCACCAAGGAGCCTTCTCACTCAAACTC  500

seq1  AGTAACCCGTGCTATGGGTCTGATCTTGAGCTGGCCTCCAGAGGCCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCCGTGCTATGGGTCTGATCTTGAGCTGGCCTCCAGAGGCCCTGG  550

seq1  TGAAAGCAGGGTACAATCTCTGCCCTTAAAGAATCAGGGGACAATGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGGGTACAATCTCTGCCCTTAAAGAATCAGGGGACAATGCTTA  600

seq1  CCATCCTGATCTTGAGACAAGGTAAATACCTTACTTACTAGGTTGAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGATCTTGAGACAAGGTAAATACCTTACTTACTAGGTTGAGGCT  650

seq1  AATTACATGGGGACAGAAACAGGAAGTATGGCTGTGAAGGCCCCTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGGGGACAGAAACAGGAAGTATGGCTGTGAAGGCCCCTGTTGG  700

seq1  TATCTCCCAGCACTGAAGCCCGGGGCAGGACAGGAAAACGGACAGAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCCAGCACTGAAGCCCGGGGCAGGACAGGAAAACGGACAGAGGCA  750

seq1  TTGCCAGTGCTATGGCCTGAGCCTGGGATAGCCCCTCGTTCTGCCCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGTGCTATGGCCTGAGCCTGGGATAGCCCCTCGTTCTGCCCTGGG  800

seq1  TACC-TTCATCGCCCAAGGAGGAAAACTTGACAGCCCTTGGAGATGTGAT  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCATCGCCCAAGGAGGAAAACTTGACAGCCCTTGGAGATGTGAT  850

seq1  TGTTCTTAAGATGATCGGCTACTTAAGTTTAATTCATAGAGTCTATTGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAAGATGATCGGCTACTTAAGTTTAATTCATAGAGTCTATTGCA  900

seq1  GCCTTCAATCCTGTGGAAAGTGACAGAAAAGAAATGGTGTGAGTGCCACC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCTTCAATCCTGTGGAAAGTGACAG-AAAGAAATGGTGTGAGTGCCACC  949

seq1  TAGTGGACAAACTTGTCAATGCAAACACCACTCATGTGCTGCAATCTCCA  999
      |||||||| ||||||||||||| ||||||||||||||||||| |||| ||
seq2  TAGTGGAC-AACTTGTCAATGC-AACACCACTCATGTGCTGC-ATCT-CA  995

seq1  AGCTAGGTTTCAAAGAGCCAGAGAACCGCATGCACAGTCACCGAGCAAGT  1049
      ||||||||||| ||||||||||| ||||||||| |||||||||||| |||
seq2  AGCTAGGTTTC-AAGAGCCAGAG-ACCGCATGCCCAGTCACCGAGC-AGT  1042

seq1  CATAAGAGGACAGTGTCACT-GGGGGAATGAGTGCAGGGCTCCTATCGCC  1098
      ||||||| ||| |||||  | |||||||||| |||| |||||||||||||
seq2  CATAAGAAGAC-GTGTCCTTGGGGGGAATGA-TGCAAGGCTCCTATCGCC  1090

seq1  TGGCTATGGTACGTGGCTCCATGCC  1123
      || ||||||||| | ||||||||||
seq2  TGACTATGGTAC-TTGCTCCATGCC  1114