BAC Information

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BAC

Clone NameB6Ng01-110C07
Chromosome14 (Build37)
Map Location 45,042,012 - 45,260,503
singlet/doubletdoublet
Overlap geneEG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725
Upstream geneLOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497
Downstream geneEG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110C07.bB6Ng01-110C07.g
ACCDH916851DH916852
length1,1791,136
definitionDH916851|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C07, 5' end.DH916852|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,042,012 - 45,043,190)(45,259,343 - 45,260,503)
sequence
gaattcattctttttaatagctgagtagtacagcatagtatggcagttct
attttaggactttgagcatcctctaaaccaaggttttctccagcggcttt
gctagtttccagtcttagtgaacagtgctcctttcctcacatcctccaca
ccatttgttgtttggtcccttaattgtgcacatgctgtctggaatgagat
tgcatgttggtgtggttttctttaaattttcattccttttatgcctgaaa
atttttaatggggttcattatttattcaccatttcactcctttttggaat
catctgtttatctcatttactgtgaacccctgtattactagaattctacc
aagaaacccctggtccttacctacatcttggtgtgacttctcttaggaat
ttctacctattataataagatctttaattaaaagtgatatggcgttagtt
cagtgtcacatcttggaatctgatttcttttcacacatatgaggacccac
atggccaggcaccatttgctaagggtatcctttcttcaatgtaagtttga
cttccttactagaactcacatgccttttctctgtcaggacaactcattct
gggtgaaaaggtcatgggtgcttggttgaagtcacatactgtgaagagga
gttctggcctagtcatgcctaaagttttcttgtagtacctgtcaacagga
aacattttccaaagttttactgagttcagatgtgtaaaaattcatccact
aggcatcaagctccagaagtttgaaccagccttgctgactaatttgaact
gaccttacttttcttcttacctcaccaagagcacttgcctaatgaaagga
gagtttgcagggatccacacattcattttctctttccatcttgtttcttt
atacttgctcattgcttctaagtctcagtatatgttgaataagtagagag
aatgtataccctggtctgtttcttattttatacagacttttctcctctcc
cattactttatgttgactatgtctgtgaatagaagattaatcgggtgagg
catgtttcttctattcctagttcttccaggaatttttatcatgaggtgat
gatgggaatgttccaatgcaatttctgtaggtactgaagagtagacaatt
caccatttaatttttggagacaatttttg
gaattctctgaaaagctcttttgctacatgatttacagttacaccttttc
agataatccatctgaatctctaaaaggtattctattgctgctacactgag
gatgaaatttccagggtttggacatgcctcaactgcctcttgttccaggc
ctgcttccctcagcccctagctctctggcctcacaaaaatcaatagtcta
ttattcattaagagactcttggagtctcctgacaaacacagccaaaggat
gacttccatgccttatattgtgattttttattcgatagcctacagctctt
gcggaagaatttttatccatttagcataactctctttctctctatctctg
tctctctttctctctgtctgtctgtctgtctgtctctgtctctctctctc
cgcgtgtggctgtgtgtgactgtgtatgtgtgtgttatacaattttctta
tatatgtaaattaatatggcctcttaagtctatttcaaacaatttagtgt
tagttattcctacgaattccctctccttctgtattatccccttcatccat
ctcaaataagcctctctctgttttatccattttccttttcatatcacctt
atcacctggatcctgctagcctattctactcccatagtctccatttatat
ttttgttttctatggttactgcagattaataccaattgaataatagtgag
ctattttgcagtatgctgctctctccagaacacaggtcataaagagaaaa
gatagagaaacatgagaattaaatgatattacacatcaaatggacggata
cgtgcagaatattctactcaagtaccaaagaataaacattctactcaaca
atccagggactcttctctaaatagagaagtttgtgggccacaaaacaaat
ttgagcaaacggaaataagtccatataccctattgcaacacagtagagta
acatttaaaaccacagcaacaatctctataagaacaaactcattgtgatt
aacaactcagtgctggatatgaatattaagatgaaataaaaaaagtagaa
attcagaaagaacaacaagaataggttccagccatgtcaaatctccttct
tcaaggaaataatatccctaagtctcccttaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_45042012_45043190
seq2: B6Ng01-110C07.b_47_1224

seq1  AATTCATTCTTTTTAATAGCTGAGAAGTACAGCATAGTATGGCAGTTCTA  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATTCATTCTTTTTAATAGCTGAGTAGTACAGCATAGTATGGCAGTTCTA  50

seq1  TTTTAGGACTTTGAGCATCCTCTAAACCAAGGTTTTCTCCTGAGGCTTTG  100
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  TTTTAGGACTTTGAGCATCCTCTAAACCAAGGTTTTCTCCAGCGGCTTTG  100

seq1  CCAGTTTCCAGTCTTAGTGAATAGTGCTCCTTTCCTCACATACTCCACAC  150
      | ||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CTAGTTTCCAGTCTTAGTGAACAGTGCTCCTTTCCTCACATCCTCCACAC  150

seq1  CCTTTGTTGTTTGTTCCCTTAATTGTGTACATGCTGTCTGGAATGAGATT  200
      | ||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  CATTTGTTGTTTGGTCCCTTAATTGTGCACATGCTGTCTGGAATGAGATT  200

seq1  GCATGGTGGTGTGGTTTTCTTTAAATTTTCATTCCTTTTATGCCTGAAAA  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTGGTGTGGTTTTCTTTAAATTTTCATTCCTTTTATGCCTGAAAA  250

seq1  TATTTAATGTGGTTCATTATTTATTCACCATTTCACTCCTTTTTGGAATC  300
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGGGGTTCATTATTTATTCACCATTTCACTCCTTTTTGGAATC  300

seq1  ATCTGTTTATCTCATTTACTGTGAACCCCTGTATTACTAGAATTCTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTGTTTATCTCATTTACTGTGAACCCCTGTATTACTAGAATTCTACCA  350

seq1  AGAAACCCCTGGTCCTTACCTACATCTTGGTGTGACTTCTCTTAGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCCCTGGTCCTTACCTACATCTTGGTGTGACTTCTCTTAGGAATT  400

seq1  TCTACCTATTATAATAAGATCTTTAATTAAAAGTGATATGGCGTTAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTATTATAATAAGATCTTTAATTAAAAGTGATATGGCGTTAGTTC  450

seq1  AGTGTCACATCTTGGAATCTGATTTCTTTTCACACATATGAGGACCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACATCTTGGAATCTGATTTCTTTTCACACATATGAGGACCCACA  500

seq1  TGGCCAGGCACCATTTGCTAAGGGTATCCTTTCTTCAATGTAAGTTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGCACCATTTGCTAAGGGTATCCTTTCTTCAATGTAAGTTTGAC  550

seq1  TTCCTTACTAGAACTCACATGCCTTTTCTCTGTCAGGACAACTCATTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTAGAACTCACATGCCTTTTCTCTGTCAGGACAACTCATTCTG  600

seq1  GGTGAAAAGGTCATGGGTGCTTGGTTGAAGTCACATACTGTGAAGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAAAGGTCATGGGTGCTTGGTTGAAGTCACATACTGTGAAGAGGAG  650

seq1  TTCTGGCCTAGTCATGCCTAAAGTTTTCTTGTAGTACCTGTCAACAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCTAGTCATGCCTAAAGTTTTCTTGTAGTACCTGTCAACAGGAA  700

seq1  ACATTTTCCAAAGTTTTACTGAGTTCAGATGTGTAAAAATTCATCCACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCAAAGTTTTACTGAGTTCAGATGTGTAAAAATTCATCCACTA  750

seq1  GGCATCAAGCTCCAGAAGTTTGAACCAGCCTTGCTGACTAATTTGAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAAGCTCCAGAAGTTTGAACCAGCCTTGCTGACTAATTTGAACTG  800

seq1  ACCTTACTTTTCTTCTTACCTCACCAAGAGCACTTGCCTAATGAAAGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTTTTCTTCTTACCTCACCAAGAGCACTTGCCTAATGAAAGGAG  850

seq1  AGTTTGCAGGGATCCACACATTCATTTTCTCTTTCCATCTTGTTTCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAGGGATCCACACATTCATTTTCTCTTTCCATCTTGTTTCTTTA  900

seq1  TACTTGCTCATTGCTTCTAAGTCTCAGGTATTATGTTGAATAAGGTAGAG  950
      |||||||||||||||||||||||||| ||| |||||||||||| ||||||
seq2  TACTTGCTCATTGCTTCTAAGTCTCA-GTA-TATGTTGAATAA-GTAGAG  947

seq1  AGAATGTATACCCTGGTCTTGTTTCTTATTTTATACAGACTTTTTCTCTC  1000
      |||||||||||||||||| |||||||||||||||||||||||||   |||
seq2  AGAATGTATACCCTGGTC-TGTTTCTTATTTTATACAGACTTTTCTCCTC  996

seq1  TCCCATTACTATAATGTTGACTATGTCTGTTGAATAGAAGATTTAATCGG  1050
      |||||||||| | |||||||||||||||| ||||||||||| ||||||||
seq2  TCCCATTACT-TTATGTTGACTATGTCTG-TGAATAGAAGA-TTAATCGG  1043

seq1  GTGAGGCATGTTTCTCCTATTCCTAGTTTCTTCAGGAA-TTTTATCATGA  1099
      ||||||||||||||| ||||||||||||  | |||||| |||||||||||
seq2  GTGAGGCATGTTTCTTCTATTCCTAGTTCTTCCAGGAATTTTTATCATGA  1093

seq1  GGTGATGATGGACATG-TCCAATGCATTTTCTGTAGGTACT---GAGATG  1145
      |||||||||||  ||| ||||||||| ||||||||||||||   |||  |
seq2  GGTGATGATGGGAATGTTCCAATGCAATTTCTGTAGGTACTGAAGAGTAG  1143

seq1  ACAATTCAACTATTAATTTTT-GAGACTATTTTTG  1179
      |||||||| |  ||||||||| ||||| |||||||
seq2  ACAATTCACCATTTAATTTTTGGAGACAATTTTTG  1178

seq1: chr14_45259343_45260503
seq2: B6Ng01-110C07.g_69_1204 (reverse)

seq1  ATTGTTAAAGTGGAAGAACTTAGAGATATTAATTTTCCTTGTAGAA-GAG  49
      ||||||||   || || |||||| |||||||  |||||||| |||| |||
seq2  ATTGTTAA---GGGAG-ACTTAGGGATATTA--TTTCCTTGAAGAAGGAG  44

seq1  ATTTTGACATGTGCTGGAGATACTATTC-TGTTGTTCTTTCCTGGAAATT  98
      | ||||||||| ||||  ||  |||||| ||||||||||| |||   | |
seq2  A-TTTGACATG-GCTG--GAACCTATTCTTGTTGTTCTTT-CTG---AAT  86

seq1  TTCTACTTTTTTTTTATTTCATCTTTAATATATCATTATCCAGCACTGAG  148
      ||||||  ||||||||||||||| ||||||| ||| ||||||||||||||
seq2  TTCTAC--TTTTTTTATTTCATC-TTAATAT-TCA-TATCCAGCACTGAG  131

seq1  TTGTTTAATCACAATGAGTTTTGTTCTTATTAGAGATTTGTTTGCTGTTG  198
      ||| |||||||||||||| |||||||||| ||||||||   |||||| ||
seq2  TTG-TTAATCACAATGAG-TTTGTTCTTA-TAGAGATT--GTTGCTG-TG  175

seq1  GTTTTAAATGTTACTCTACTGTGTTGCAATAGGGTATATGGACTTATTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATGTTACTCTACTGTGTTGCAATAGGGTATATGGACTTATTTC  225

seq1  CGTTTTGCTCAAATTTGTTTTGTGGCCCACAAACTTCTCTATTTTAGAGA  298
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CG-TTTGCTCAAATTTGTTTTGTGGCCCACAAACTTCTCTA-TTTAGAGA  273

seq1  AGAGTCCCTGGATTGTTGAGTAGAATGTTTATTCTTTGGTACTTGAGTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCTGGATTGTTGAGTAGAATGTTTATTCTTTGGTACTTGAGTAG  323

seq1  AATATTCTGCACGTATCCGTCCATTTGATGTGTAATATCATTTAATTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTGCACGTATCCGTCCATTTGATGTGTAATATCATTTAATTCTC  373

seq1  ATGTTTCTCTATCTTTTCTCTTTATGACCTGTGTTCTGGAGAGAGCAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTCTATCTTTTCTCTTTATGACCTGTGTTCTGGAGAGAGCAGCA  423

seq1  TACTGCAAAATAGCTCACTATTATTCAATTGGTATTAATCTGCAGTAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAAAATAGCTCACTATTATTCAATTGGTATTAATCTGCAGTAACC  473

seq1  ATAGAAAACAAAAATATAAATGGAGACTATGGGAGTAGAATAGGCTAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAACAAAAATATAAATGGAGACTATGGGAGTAGAATAGGCTAGCA  523

seq1  GGATCCAGGTGATAAGGTGATATGAAAAGGAAAATGGATAAAACAGAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGGTGATAAGGTGATATGAAAAGGAAAATGGATAAAACAGAGAG  573

seq1  AGGCTTATTTGAGATGGATGAAGGGGATAATACAGAAGGAGAGGGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATTTGAGATGGATGAAGGGGATAATACAGAAGGAGAGGGAATTC  623

seq1  GTAGGAATAACTAACACTAAATTGTTTGAAATAGACTTAAGAGGCCATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATAACTAACACTAAATTGTTTGAAATAGACTTAAGAGGCCATAT  673

seq1  TAATTTACATATATAAGAAAATTGTATAACACACACATACACAGTCACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATATATAAGAAAATTGTATAACACACACATACACAGTCACAC  723

seq1  ACAGCCACACGCGGAGAGAGAGAGACAGAGACAGACAGACAGACAGACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACACGCGGAGAGAGAGAGACAGAGACAGACAGACAGACAGACAG  773

seq1  AGAGAAAGAGAGACAGAGATAGAGAGAAAGAGAGTTATGCTAAATGGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGAGACAGAGATAGAGAGAAAGAGAGTTATGCTAAATGGATA  823

seq1  AAAATTCTTCCGCAAGAGCTGTAGGCTATCGAATAAAAAATCACAATATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTCCGCAAGAGCTGTAGGCTATCGAATAAAAAATCACAATATA  873

seq1  AGGCATGGAAGTCATCCTTTGGCTGTGTTTGTCAGGAGACTCCAAGAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGAAGTCATCCTTTGGCTGTGTTTGTCAGGAGACTCCAAGAGTC  923

seq1  TCTTAATGAATAATAGACTATTGATTTTTGTGAGGCCAGAGAGCTAGGGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAATAATAGACTATTGATTTTTGTGAGGCCAGAGAGCTAGGGG  973

seq1  CTGAGGGAAGCAGGCCTGGAACAAGAGGCAGTTGAGGCATGTCCAAACCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAAGCAGGCCTGGAACAAGAGGCAGTTGAGGCATGTCCAAACCC  1023

seq1  TGGAAATTTCATCCTCAGTGTAGCAGCAATAGAATACCTTTTAGAGATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTTCATCCTCAGTGTAGCAGCAATAGAATACCTTTTAGAGATTC  1073

seq1  AGATGGATTATCTGAAAAGGTGTAACTGTAAATCATGTAGCAAAAGAGCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATTATCTGAAAAGGTGTAACTGTAAATCATGTAGCAAAAGAGCT  1123

seq1  TTTCAGAGAATTC  1161
      |||||||||||||
seq2  TTTCAGAGAATTC  1136