BAC Information

Click to search

BAC

Clone NameB6Ng01-110C17
Chromosome14 (Build37)
Map Location 114,842,925 - 115,007,092
singlet/doubletdoublet
Overlap geneLOC100043521
Upstream geneLOC100043510, LOC382947, LOC668791, LOC100043821
Downstream geneGpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110C17.bB6Ng01-110C17.g
ACCDH916869DH916870
length1,1271,042
definitionDH916869|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C17, 5' end.DH916870|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,842,925 - 114,844,035)(115,006,032 - 115,007,092)
sequence
gaattcatatatataccatatataaattattcatatatatgtatatatat
gcttgccctttgaccctaatcacattagttggaatacattaggttgtact
gacatggtacagctcagtggttgcatgtttgcttagcatacctgagacta
gagtccatttaaaacacaataaaaatgttttaatagaaaaataccagcag
ttaagtgaattaaacattattagaaatttacagaaaacataaaaagtaaa
aagtattggtttaagaggccagaaatcatgatgagaatctgtgtcatctc
atttctctcatttgattttcatgtcttatttcatgtattacttactttct
actcaggacttatttataggataacatacaaccatagaagaagataacaa
gagatgaataaagaatatacaaggtaattattaaagattactaacaagag
ctgggcgtgatagcacacgcctttaatctcagcactcaggaggcagagcc
aggcagatttctgagttcaaggtcagcctagtctacaaagtgagttccag
gaccaggacaccagggctacacagagaaaccttgtctcaaaaaaaaaaaa
ttactaacaaaatatctctagcagcttcttactttcagtgtgaaataaat
ttaaatcctgcaattaaaagacattattgatgtattacaggaaatagaaa
tatgttctgcctaggaaaccaactccgtctacaataacagaacacatgca
cgcatgcaaggaaagaaaaatatgttgtgcagtagaaaacaagagaagca
gctgtctctatatcagatgcaataggacttgatgtgaaaagggaaaatat
acaggagagtgattataaaaaattaaatgactcaataaagtaggttgtgg
tacagcaaggtaacaaaccatatctaccccatcattaaactacataaacc
caccaaagcctgaatttagctacacggagcatttaacataattcataaat
aaaagaatatttatttccgaacacattttttattagtgagccccacatcc
aggaaacaaatcactaatgatacaaaaggatttaaacttacatcatttaa
acggtggagctaaatagatggtacatt
gaattcttttcctaatgtatttataatcttgcacatactaaggcatacac
atttctgcatataacacaaataagaactttggtttttcttagttttttga
tattaactttttagtactaacttcattttaaagaatacagttatgggttg
tctttatctttggacttgtttctgcctcataaatcagcactggcttatgt
tttctttcttttgatacagccagaccactttataggatgctatgtaactg
aagtaggtcaaatccgtgtcaatgtttgccagtcttcaggttaatttttt
taaaaatctgtattgttttgctggtcaagaagaaatatatatccccagtc
aaccaatctgaacacagcttctcgcattgtctttccagctcttcgtagct
cacatctttattggttttctccagcttggaaccgtattttctcttgttgc
atattgacatctattttacttatagctttctatagattaagtaacctgta
gcagtcaattaaggtttattgattgtctgactgcaaaccttttacctgtt
acatcctctttctttatctcatgattcattctttggatgtgatttctaac
ctatattcgattatcattacctctgggtgttaagatcatcctctccctca
tggggtgagaaatgtcctggctcactttcatcccaatttaaattcaaaga
gaaatacaactagttatatccctattaactcccatactgctctcataatc
ttggagggatgatgattcttctatgagaatctgtcttgtggggtccctgg
cccatgctcagacataaacccaccaaccacactttgtaggtaaagcaata
catatgaagccacacaggcagactcagatttggtttctctacctaaagat
ctgatgatgtagattttgatgcgcagaaatggaatgtctcatccagtctc
atacaaaatttcatgatcagaaagaatcaaggtagtgaaatctttcttga
ggagtagaaaagctgtccgatagaccaataaatcttaagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114842925_114844035
seq2: B6Ng01-110C17.b_41_1167

seq1  GAATTCATATATATACCATATATAAATTATTCATATATATGTATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATATACCATATATAAATTATTCATATATATGTATATATAT  50

seq1  GCTTGCCCTTTGACCCTAATCACATTAGTTGGAATACATTAGGTTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCCTTTGACCCTAATCACATTAGTTGGAATACATTAGGTTGTACT  100

seq1  GACATGGTACAGCTCAGTGGTTGCATGTTTGCTTAGCATACCTGAGACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGTACAGCTCAGTGGTTGCATGTTTGCTTAGCATACCTGAGACTA  150

seq1  GAGTCCATTTAAAACACAATAAAAATGTTTTAATAGAAAAATACCAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCATTTAAAACACAATAAAAATGTTTTAATAGAAAAATACCAGCAG  200

seq1  TTAAGTGAATTAAACATTATTAGAAATTTACAGAAAACATAAAAAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAATTAAACATTATTAGAAATTTACAGAAAACATAAAAAGTAAA  250

seq1  AAGTATTGGTTTAAGAGGCCAGAAATCATGATGAGAATCTGTGTCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGGTTTAAGAGGCCAGAAATCATGATGAGAATCTGTGTCATCTC  300

seq1  ATTTCTCTCATTTGATTTTCATGTCTTATTTCATGTATTACTTACTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCATTTGATTTTCATGTCTTATTTCATGTATTACTTACTTTCT  350

seq1  ACTCAGGACTTATTTATAGGATAACATACAACCATAGAAGAAGATAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGACTTATTTATAGGATAACATACAACCATAGAAGAAGATAACAA  400

seq1  GAGATGAATAAAGAATATACAAGGTAATTATTAAAGATTACTAACAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAATAAAGAATATACAAGGTAATTATTAAAGATTACTAACAAGAG  450

seq1  CTGGGCGTGATAGCACACGCCTTTAATCTCAGCACTCAGGAGGCAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGTGATAGCACACGCCTTTAATCTCAGCACTCAGGAGGCAGAGCC  500

seq1  AGGCAGATTTCTGAGTTCAAGGTCAGCCTAGTCTACAAAGTGAGTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATTTCTGAGTTCAAGGTCAGCCTAGTCTACAAAGTGAGTTCCAG  550

seq1  GACCAGGACACCAGGGCTACACAGAGAAACCTTGTCTCAAAAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGACACCAGGGCTACACAGAGAAACCTTGTCTCAAAAAAAAAAAA  600

seq1  TTACTAACAAAATATCTCTAGCAGCTTCTTACTTTCAGTGTGAAATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAACAAAATATCTCTAGCAGCTTCTTACTTTCAGTGTGAAATAAAT  650

seq1  TTAAATCCTGCAATTAAAAGACATTATTGATGTATTACAGGAAATAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCTGCAATTAAAAGACATTATTGATGTATTACAGGAAATAGAAA  700

seq1  TATGTTCTGCCTAGGAAACCAACTCCGTCTACAATAACAGAACACATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTGCCTAGGAAACCAACTCCGTCTACAATAACAGAACACATGCA  750

seq1  CGCATGCAAGGAAAGAAAAATATGTTGTGCAGTAGAAAACAAGAGAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCAAGGAAAGAAAAATATGTTGTGCAGTAGAAAACAAGAGAAGCA  800

seq1  GCTGTCTCTATATCAGATGCAATA-GACTTGATGTGAAAAGGAAAAATAG  849
      |||||||||||||||||||||||| ||||||||||||||||| |||||| 
seq2  GCTGTCTCTATATCAGATGCAATAGGACTTGATGTGAAAAGGGAAAATAT  850

seq1  ACAGGAGAGTGATTATAAAATATTAAATGACTCAATAAAGTAGG-TGT-G  897
      |||||||||||||||||||| ||||||||||||||||||||||| ||| |
seq2  ACAGGAGAGTGATTATAAAAAATTAAATGACTCAATAAAGTAGGTTGTGG  900

seq1  TACAGCAAG--TACAAA-CATATCTACCCCATCATTAAACTACACAAACA  944
      |||||||||   ||||| |||||||||||||||||||||||||| |||| 
seq2  TACAGCAAGGTAACAAACCATATCTACCCCATCATTAAACTACATAAACC  950

seq1  CACCAAAG-CTGAA-TTAGCTACAC-GAGCA-TTAACAT-ATTCAATAAT  989
      |||||||| ||||| |||||||||| ||||| ||||||| |||||  |||
seq2  CACCAAAGCCTGAATTTAGCTACACGGAGCATTTAACATAATTCATAAAT  1000

seq1  AAAAGAATA-TTAATTCCGAACACAATTTTTATTAGTGAG-CCCACATCC  1037
      ||||||||| ||| ||||||||||| |||||||||||||| |||||||||
seq2  AAAAGAATATTTATTTCCGAACACATTTTTTATTAGTGAGCCCCACATCC  1050

seq1  AGAAACAAAATCACTAATGATAC-AAAGGATTTAAAC-TACATCATTTTA  1085
      || ||  |||||||||||||||| ||||||||||||| |||||||||| |
seq2  AGGAAACAAATCACTAATGATACAAAAGGATTTAAACTTACATCATTTAA  1100

seq1  AACGTGAGCCTAAATAGAT-GTACATT  1111
      |  |||   |||||||||| |||||||
seq2  ACGGTGGAGCTAAATAGATGGTACATT  1127

seq1: chr14_115006032_115007092
seq2: B6Ng01-110C17.g_68_1109 (reverse)

seq1  ACTCTAAAGATTTATTGTGTCTATCGCGACAGCTTCTTCTACTCCTTCAA  50
      ||||| ||||||||||| |||||||| |||||||| ||||||||||   |
seq2  ACTCTTAAGATTTATTG-GTCTATCG-GACAGCTT-TTCTACTCCT--CA  45

seq1  AGAAAGATTTCACTACCTTTGATTCCTTTCCTGATCTATGAAAATTTTGT  100
      ||||||||||||||||| |||||||  || |||||| ||| |||||||||
seq2  AGAAAGATTTCACTACC-TTGATTC--TTTCTGATC-ATG-AAATTTTGT  90

seq1  ATGAGAACTTGGATTGAGAACATTCCATTTCTGCGCATCAAAAATCTACA  150
      ||||||   |||| |||| |||||||||||||||||||| ||||||||||
seq2  ATGAGA--CTGGA-TGAG-ACATTCCATTTCTGCGCATC-AAAATCTACA  135

seq1  TCATCAGATCTTTAGGTAGAGAAAACCAAATCTGAGTCTGCCTGTGTGGC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATCAGATCTTTAGGTAGAG-AAACCAAATCTGAGTCTGCCTGTGTGGC  184

seq1  TTCATATGTATTGCTTTACCTACAAAAGTGTGGTTGGTGGGTTTATGTCT  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCATATGTATTGCTTTACCTAC-AAAGTGTGGTTGGTGGGTTTATGTCT  233

seq1  GAGCATTGGGCCAGGGACCCCACAAGACAGATTCTCATAGAAGAATCATC  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCA-TGGGCCAGGGACCCCACAAGACAGATTCTCATAGAAGAATCATC  282

seq1  ATCCCCTCCAAGATTATGAGAGCAGTATGGGAGTTAATAGGGATATAACT  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-CCCTCCAAGATTATGAGAGCAGTATGGGAGTTAATAGGGATATAACT  331

seq1  AGTTGTATTTCTCTTTGAATTTAAATTGGGATGAAAGTGAGCCAGGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTTCTCTTTGAATTTAAATTGGGATGAAAGTGAGCCAGGACAT  381

seq1  TTCTCACCCCATGAGGGAGAGGATGATCTTAACACCCAGAGGTAATGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCCCATGAGGGAGAGGATGATCTTAACACCCAGAGGTAATGATA  431

seq1  ATCGAATATAGGTTAGAAATCACATCCAAAGAATGAATCATGAGATAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAATATAGGTTAGAAATCACATCCAAAGAATGAATCATGAGATAAAG  481

seq1  AAAGAGGATGTAACAGGTAAAAGGTTTGCAGTCAGACAATCAATAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGATGTAACAGGTAAAAGGTTTGCAGTCAGACAATCAATAAACCT  531

seq1  TAATTGACTGCTACAGGTTACTTAATCTATAGAAAGCTATAAGTAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGACTGCTACAGGTTACTTAATCTATAGAAAGCTATAAGTAAAATA  581

seq1  GATGTCAATATGCAACAAGAGAAAATACGGTTCCAAGCTGGAGAAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAATATGCAACAAGAGAAAATACGGTTCCAAGCTGGAGAAAACCA  631

seq1  ATAAAGATGTGAGCTACGAAGAGCTGGAAAGACAATGCGAGAAGCTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGTGAGCTACGAAGAGCTGGAAAGACAATGCGAGAAGCTGTGT  681

seq1  TCAGATTGGTTGACTGGGGATATATATTTCTTCTTGACCAGCAAAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGGTTGACTGGGGATATATATTTCTTCTTGACCAGCAAAACAAT  731

seq1  ACAGATTTTTAAAAAAATTAACCTGAAGACTGGCAAACATTGACACGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTTAAAAAAATTAACCTGAAGACTGGCAAACATTGACACGGAT  781

seq1  TTGACCTACTTCAGTTACATAGCATCCTATAAAGTGGTCTGGCTGTATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTACTTCAGTTACATAGCATCCTATAAAGTGGTCTGGCTGTATCA  831

seq1  AAAGAAAGAAAACATAAGCCAGTGCTGATTTATGAGGCAGAAACAAGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAACATAAGCCAGTGCTGATTTATGAGGCAGAAACAAGTCC  881

seq1  AAAGATAAAGACAACCCATAACTGTATTCTTTAAAATGAAGTTAGTACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAGACAACCCATAACTGTATTCTTTAAAATGAAGTTAGTACTA  931

seq1  AAAAGTTAATATCAAAAAACTAAGAAAAACCAAAGTTCTTATTTGTGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAATATCAAAAAACTAAGAAAAACCAAAGTTCTTATTTGTGTTA  981

seq1  TATGCAGAAATGTGTATGCCTTAGTATGTGCAAGATTATAAATACATTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGAAATGTGTATGCCTTAGTATGTGCAAGATTATAAATACATTAG  1031

seq1  GAAAAGAATTC  1061
      |||||||||||
seq2  GAAAAGAATTC  1042