BAC Information

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BAC

Clone NameB6Ng01-110G01
Chromosome14 (Build37)X (Build37)
Map Location 18,861,438 - 18,862,46519,908,212 - 19,908,428
singlet/doubletsingletsinglet
Overlap geneThrb
Upstream genenone
Downstream geneLOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110G01.bB6Ng01-110G01.g
ACCDH917015DH917016
length1,013828
definitionDH917015|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G01, 5' end.DH917016|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,861,438 - 18,862,465)(19,908,212 - 19,908,428)
sequence
gaattcactatgcagactaagctggacttaaagtagtgggaatctgcctc
tgcctcacaaatgcaggagctacaggtatataataacatgctcagactac
aactacttaaaaaaatgtttatgactgttttgactgcacacatgtctatg
cacccaaagaggtcattggatccttagaactagaggtatgggtgggtggt
tgtgagctgcatgttggtgctgggttctctgggagaacagccagtgctct
taactgctgaaccatctctccagccccctcaatcactgtttttaaatctc
caggctggttaatttcagcagtttacatttcttttagcacaggtcttcaa
ctggtattatagtaatgcagaagtctccatcagtcagcccttcattctga
gttttacttgaaagtgcggctgagcagagttcaagactcatcttctttta
ttgtgtgtagctctgctggtcagtgggcagctgagcttttcaggaagtac
aaaacttccttagaaggtgccagatgcaagtgactaaggcagtacaagct
ttgctcgttgtcaaccagcaaatccagggcagaggtgaagccagaatcca
gtgtcctggcttccaggtttctatatttggtgacctagataccagagtca
atggacaagctagctctttctgctcatatttcagggtcatttaaagctta
tttggtcaccatgctatttaggttttatgacaatgggctaataaaacttt
acaacagaactctgtgtggcaaatattaaaaataaaaattattttctggg
gttggagaaaagttcagaatccaatattgatgtcatttgaatgggtctga
atgactgttacacctctgtctcttgtcaaacttacagcagctcacttaac
ttcccagttagggagacattgatttccagtttattcccacagtgattaac
aatccctctacgtcaccgtgccagatgactggaataggatattttgtatg
tacgctgggattt
gaattctttgtttatctctgtaccccattttaataaggttacttgatttt
tctggagtccatcttcttgagttctttatatatattggatattagtcccc
tatctgatttatgataggtaaagatcctttcccaatctgttgatggcctt
tttgtcttattgacagtgtcttttgccttacagaagctttgcaattttat
gagtcccatttgtcaattttcgattttacaggccaatccatacaataatt
ctttctttctttcttttctttttctttttcttttttctttttcttttttc
ttttttcttttttttttttttttttttttttttggtattccggggttaaa
tatactttttaaattttttttattaaatattttcttcatttacatttcaa
atgctatcccaaaagtccagtataccctccccctgccctggtctcctact
cactcactcccacttcttggcccttgcgttcccctgtactggggcatata
aagaatgcaaaaccaaggggcccctcttcccaatgatggctgactaggcc
atcttctgctacatatgcactaaatttcaatgcaaaatgtttttctatct
cttaaaaatgcatttcaggttaggcatagagcataaagtattctcctttc
ttagagactgtattaattttcagtgtgtactacaacaattttgacacaac
aatttgaacttgagagactggaagttctcattgtgcagatctttcacaaa
gtttggttagagtcccaccagacattttatattgttagtgactattgtga
agggtgtcatttccctaatttcttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18861438_18862465
seq2: B6Ng01-110G01.b_45_1057 (reverse)

seq1  AAATCCCAGCCTTACCTACAAAATATCCCTATGCCAGGCATACTAGCACA  50
      ||||||||| | ||| |||||||||| ||||| |||| ||| || |||| 
seq2  AAATCCCAG-CGTACATACAAAATAT-CCTATTCCAGTCAT-CTGGCACG  47

seq1  CTGAAGTCTGAGTGCTTGTTTATCACATGTGTGAATGAAACTGGAATTCA  100
       ||| ||  ||| | ||||| ||||| |||| |||| ||||||||| || 
seq2  GTGACGT-AGAGGGATTGTTAATCAC-TGTGGGAAT-AAACTGGAAATC-  93

seq1  AATGTTTACCTAACTGTGAAGTTCAACTGAGATGACTGTAAATTTTGACA  150
      ||||| | |||||||| |||||| || |||| || |||| || |||||||
seq2  AATGTCTCCCTAACTGGGAAGTT-AAGTGAGCTG-CTGT-AAGTTTGACA  140

seq1  AGAAACAGAAGATGTAACAGTCATTCAGACCCATTCAAATGACATCAATA  200
      ||| |||| || ||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAG-AGGTGTAACAGTCATTCAGACCCATTCAAATGACATCAATA  189

seq1  TTGAATTCTTGAACTTTTTCTCCAACCCCAGAAAATAATTTTCTATTTTT  250
      ||| |||| ||||| ||||||||||||||||||||||||||| |||||||
seq2  TTGGATTC-TGAAC-TTTTCTCCAACCCCAGAAAATAATTTT-TATTTTT  236

seq1  ACTATTTTGCCACACAGAGTTCTGTTGTAAAGTTTTATTAGCCCATTGTC  300
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATA-TTTGCCACACAGAGTTCTGTTGTAAAGTTTTATTAGCCCATTGTC  285

seq1  ATAAAACCTAAATAGCATGGTGACCAAATAAGCTTTAAATGACCCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTAAATAGCATGGTGACCAAATAAGCTTTAAATGACCCTGAAA  335

seq1  TCTGAGCAGAAAGAGCTAGCTTGTCCATTGACTCTGGTATCTAGGTCACC  400
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGCAGAAAGAGCTAGCTTGTCCATTGACTCTGGTATCTAGGTCACC  385

seq1  AAATATAGAAACCTGGAAGCCAGGACACTGGATTCTGGCTTCACCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGAAACCTGGAAGCCAGGACACTGGATTCTGGCTTCACCTCTGC  435

seq1  CCTGGATTTGCTGGTTGACAACGAGCAAAGCTTGTACTGCCTTAGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTTGCTGGTTGACAACGAGCAAAGCTTGTACTGCCTTAGTCACT  485

seq1  TGCATCTGGCACCTTCTAAGGAAGTTTTGTACTTCCTGAAAAGCTCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGGCACCTTCTAAGGAAGTTTTGTACTTCCTGAAAAGCTCAGCT  535

seq1  GCCCACTGACCAGCAGAGCTACACACAATAAAAGAAGATGAGTCTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGACCAGCAGAGCTACACACAATAAAAGAAGATGAGTCTTGAAC  585

seq1  TCTGCTCAGCCGCACTTTCAAGTAAAACTCAGAATGAAGGGCTGACTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCAGCCGCACTTTCAAGTAAAACTCAGAATGAAGGGCTGACTGAT  635

seq1  GGAGACTTCTGCATTACTATAATACCAGTTGAAGACCTGTGCTAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTCTGCATTACTATAATACCAGTTGAAGACCTGTGCTAAAAGAA  685

seq1  ATGTAAACTGCTGAAATTAACCAGCCTGGAGATTTAAAAACAGTGATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACTGCTGAAATTAACCAGCCTGGAGATTTAAAAACAGTGATTGA  735

seq1  GGGGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGGCTGTTCTCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTGGAGAGATGGTTCAGCAGTTAAGAGCACTGGCTGTTCTCCCAG  785

seq1  AGAACCCAGCACCAACATGCAGCTCACAACCACCCACCCATACCTCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAGCACCAACATGCAGCTCACAACCACCCACCCATACCTCTAGT  835

seq1  TCTAAGGATCCAATGACCTCTTTGGGTGCATAGACATGTGTGCAGTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGATCCAATGACCTCTTTGGGTGCATAGACATGTGTGCAGTCAAA  885

seq1  ACAGTCATAAACATTTTTTTAAGTAGTTGTAGTCTGAGCATGTTATTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATAAACATTTTTTTAAGTAGTTGTAGTCTGAGCATGTTATTATA  935

seq1  TACCTGTAGCTCCTGCATTTGTGAGGCAGAGGCAGATTCCCACTACTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTAGCTCCTGCATTTGTGAGGCAGAGGCAGATTCCCACTACTTTA  985

seq1  AGTCCAGCTTAGTCTGCATAGTGAATTC  1028
      ||||||||||||||||||||||||||||
seq2  AGTCCAGCTTAGTCTGCATAGTGAATTC  1013

seq1: chrX_19908212_19908428
seq2: B6Ng01-110G01.g_421_634 (reverse)

seq1  TGCATATGTAGCAGAAGATTGCCTAGTTAGCCATCATTGGGAAGAGAGGC  50
      ||||||||||||||||||| ||||||| |||||||||||||||||| |||
seq2  TGCATATGTAGCAGAAGATGGCCTAGTCAGCCATCATTGGGAAGAGGGGC  50

seq1  CCCTTGGCCTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCAAGGGC  100
      |||||||  |||||  ||||||||||||||||||||||||| ||||||||
seq2  CCCTTGGTTTTGCATTCTTTATATGCCCCAGTACAGGGGAACGCAAGGGC  100

seq1  CAAGAAGTTGGAGTGGGTGGGTAGGGGAGCAGGGCAGGGGGAGGGTATAG  150
      |||||||| |||||| ||| ||||| || |||||||||||||||||||| 
seq2  CAAGAAGTGGGAGTGAGTGAGTAGGAGACCAGGGCAGGGGGAGGGTATAC  150

seq1  CAGACTTTTGGGATGGCATTTGAAATGTAAATGAAGACAATACCTAATTT  200
        |||||||||||| |||||||||||||||||||||| ||||  ||||  
seq2  TGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATATTTAAT--  198

seq1  AAAAAATAAATTAAAAA  217
       ||||| || |||||||
seq2  -AAAAAAAATTTAAAAA  214