BAC Information

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BAC

Clone NameB6Ng01-110O24
Chromosome14 (Build37)
Map Location 112,646,831 - 112,786,829
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509, Tpm3-rs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110O24.bB6Ng01-110O24.g
ACCDH917417DH917418
length1,1041,106
definitionDH917417|Mus musculus domesticus DNA, BAC clone: B6Ng01-110O24, 5' end.DH917418|Mus musculus domesticus DNA, BAC clone: B6Ng01-110O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,785,707 - 112,786,829)(112,646,831 - 112,647,926)
sequence
gaattctgaggcatttagttaaaggaaataaagatgaaaatggaatattt
cctttaacaaccctgacatacgctagtgggggtccagtgaactgtcttat
ttggtcaaagtgctgaacatgtaagactgaacatatgccattcggtctct
agaaaacaggatgggagattcaggacagcatgtgaaaagtgaaaatgata
agaattcaccctgacccaaaataagtgcaaggccatccaactgacttatg
gaagtggtgttctgattctgaacgtgtgctggagagctacacacctgtat
gcgagcacacacagataaagagcgtctggagaagatgatagatgggatct
aacaataatataaataaaaaataaattactctagctcatcctatacaaaa
caaaatatcagatatcatttgaaagacaaagagcagctacttacttacaa
aataaaaatgtattcaaataaaaagtaataaaaggaaggaaaataatttt
atatattaaaatgcaatctggactagcaattttaacatccaaatgaatag
tttataacaagtggtattatgagtattatataatgataagacatgtattg
tctagtgaaatattcaagagctgtacatggcccaacgcagagacatacca
gaacacagtggagacgtacacaaagccatgaaagtacttagaaatttttg
tagcctcctatggataatcaatataacacatggccaaaagtaagatgctt
atgtatgctctgtgtatgtgtgatctaagacaacattttaaacacaaatt
tataagataaacacttttcttaagaataggtctagctccattcagttgct
gtgataaaacattttgtctaaaaacaacttggagaagaaagagtccattg
gccttacaatcccgtactatagtttatctatcattgcagaaatcagcaca
aatctcacaggaaaggggagcagagttgtctgctgtccatgttgcagtac
tgcagtagctgggcactccattgagtaagagtacatagaacatggaaact
actatgagggtttacagctcatgtttaactagattcgcatacctctcaac
tact
gaattctctgtttatacctgtaattgaaaactctttgagttctttatata
ttttggacatttgtcctaaatcagatttgaaaatggttaaacaaaacaaa
acaaaacaaaacgaactttccttattttgcaggctactgcattgtgcaaa
taatggtgcttttttaaaaattttaatttaattttattttttgccatgca
gaaacatttcaggtaatgaggtcctacttactaatttttgccttagcgct
tctgctgatgtgttttctgtgaagagagttttcctatgccaatgcactca
aggctattccgcactctctcttctatcaggttcactgtattcattttatt
tttacttttacttttacttttacttttacttttacttttacttttacttt
tatttttatttttatttttatttttatttttatttttgctgaggttttgg
atgcactttgtgtttagttttttttgtagtgtgataattacggatctact
tgaattctttatatacaaccatcctgatagtgcagctctcagtagaaaaa
aacaaaaaacaaataaagtttgcacagtgcccagggcaaacctctccttg
tagagggtttctgaaagaacagttgtctaggagcatctaaaacaaactgc
ctgaagttaaattgtgagtctatcctgggcagtttatgttctgctggaga
tggctctctaaacagctctcttttgatagctcttggctctgtagtctact
tgagatattcagactgttctttgtttctgtgttctactctgctctgttct
agactgccttttcttgatactataaaaatctttctagttgagagaactag
ctttctgctcaagacagctcactctgagtgagtcaattttctctgcagta
aaattctaaagctctctggctagctcataggttttctgaccaaattcaga
gaaaaaaaaatgctgtagaaattccagatcttctgaccagtagaaatcct
gtttaaaattataaccttattcttggtttacaatcaatttcagagacgaa
tataggactctttagctctctgagtaattctggggatggttgacttctgt
taaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_112785707_112786829
seq2: B6Ng01-110O24.b_46_1149 (reverse)

seq1  AGTAGTTGAGAGTTATAGAAGGAATCTAGTTAAACATGGAGCTGTAAACC  50
      |||||||||||| |||     |||||||||||||||| ||||||||||||
seq2  AGTAGTTGAGAGGTAT---GCGAATCTAGTTAAACAT-GAGCTGTAAACC  46

seq1  CTCCATAGTAGTTTTCCATGGTTTCTATTGTACTTCTTTCTCCATTGTGA  100
      || |||||||| ||||||||  ||||| ||||| |||| ||| ||   ||
seq2  CT-CATAGTAG-TTTCCATG--TTCTA-TGTAC-TCTTACTCAAT--GGA  88

seq1  GTGCCCCAGCTACTGGCAGGTACTGCAACATGGAACAGCAGACAACTCTG  150
      ||| |||||||||| ||| |||||||||||||| ||||||||||||||||
seq2  GTG-CCCAGCTACT-GCA-GTACTGCAACATGG-ACAGCAGACAACTCTG  134

seq1  CCTCCCCTTTCCTGTTGAGATTTTGTGCTGATTTTCTGCAATGATAGATA  200
       ||||||||||||| ||||| |||||||||| ||||||||||||||||||
seq2  -CTCCCCTTTCCTG-TGAGA-TTTGTGCTGA-TTTCTGCAATGATAGATA  180

seq1  AACTATAGTACGGGATTGTAA-GCCAATGGACTCTTTCTTCTCCAAGTTG  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACTATAGTACGGGATTGTAAGGCCAATGGACTCTTTCTTCTCCAAGTTG  230

seq1  TTTTTAGACAAAATGTTTTATCACAGCAACTGAATGGAGCTAGACCTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGACAAAATGTTTTATCACAGCAACTGAATGGAGCTAGACCTATT  280

seq1  CTTAAGAAAAGTGTTTATCTTATAAATTTGTGTTTAAAATGTTGTCTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAAAAGTGTTTATCTTATAAATTTGTGTTTAAAATGTTGTCTTAG  330

seq1  ATCACACATACACAGAGCATACATAAGCATCTTACTTTTGGCCATGTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACATACACAGAGCATACATAAGCATCTTACTTTTGGCCATGTGTT  380

seq1  ATATTGATTATCCATAGGAGGCTACAAAAATTTCTAAGTACTTTCATGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATTATCCATAGGAGGCTACAAAAATTTCTAAGTACTTTCATGGC  430

seq1  TTTGTGTACGTCTCCACTGTGTTCTGGTATGTCTCTGCGTTGGGCCATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTACGTCTCCACTGTGTTCTGGTATGTCTCTGCGTTGGGCCATGT  480

seq1  ACAGCTCTTGAATATTTCACTAGACAATACATGTCTTATCATTATATAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTGAATATTTCACTAGACAATACATGTCTTATCATTATATAAT  530

seq1  ACTCATAATACCACTTGTTATAAACTATTCATTTGGATGTTAAAATTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAATACCACTTGTTATAAACTATTCATTTGGATGTTAAAATTGCT  580

seq1  AGTCCAGATTGCATTTTAATATATAAAATTATTTTCCTTCCTTTTATTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGATTGCATTTTAATATATAAAATTATTTTCCTTCCTTTTATTAC  630

seq1  TTTTTATTTGAATACATTTTTATTTTGTAAGTAAGTAGCTGCTCTTTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTGAATACATTTTTATTTTGTAAGTAAGTAGCTGCTCTTTGTC  680

seq1  TTTCAAATGATATCTGATATTTTGTTTTGTATAGGATGAGCTAGAGTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGATATCTGATATTTTGTTTTGTATAGGATGAGCTAGAGTAAT  730

seq1  TTATTTTTTATTTATATTATTGTTAGATCCCATCTATCATCTTCTCCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATTTATATTATTGTTAGATCCCATCTATCATCTTCTCCAGA  780

seq1  CGCTCTTTATCTGTGTGTGCTCGCATACAGGTGTGTAGCTCTCCAGCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTTATCTGTGTGTGCTCGCATACAGGTGTGTAGCTCTCCAGCACA  830

seq1  CGTTCAGAATCAGAACACCACTTCCATAAGTCAGTTGGATGGCCTTGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGAATCAGAACACCACTTCCATAAGTCAGTTGGATGGCCTTGCAC  880

seq1  TTATTTTGGGTCAGGGTGAATTCTTATCATTTTCACTTTTCACATGCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGGTCAGGGTGAATTCTTATCATTTTCACTTTTCACATGCTGT  930

seq1  CCTGAATCTCCCATCCTGTTTTCTAGAGACCGAATGGCATATGTTCAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCTCCCATCCTGTTTTCTAGAGACCGAATGGCATATGTTCAGTC  980

seq1  TTACATGTTCAGCACTTTGACCAAATAAGACAGTTCACTGGACCCCCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTTCAGCACTTTGACCAAATAAGACAGTTCACTGGACCCCCACT  1030

seq1  AGCGTATGTCAGGGTTGTTAAAGGAAATATTCCATTTTCATCTTTATTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTATGTCAGGGTTGTTAAAGGAAATATTCCATTTTCATCTTTATTTC  1080

seq1  CTTTAACTAAATGCCTCAGAATTC  1123
      ||||||||||||||||||||||||
seq2  CTTTAACTAAATGCCTCAGAATTC  1104

seq1: chr14_112646831_112647926
seq2: B6Ng01-110O24.g_108_1175

seq1  GTTCTTTATATATTTTGGACATTTGTCCTAAATCAGATTTGAAAATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATATATTTTGGACATTTGTCCTAAATCAGATTTGAAAATGGTT  50

seq1  AAACAAAACAAAACAAAACAAAACGAACTTTCCTTATTTTGCAGGCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAACAAAACGAACTTTCCTTATTTTGCAGGCTACT  100

seq1  GCATTGTGCAAATAATGGTGCTTTTTTAAAAATTTTAATTTAATTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGCAAATAATGGTGCTTTTTTAAAAATTTTAATTTAATTTTATT  150

seq1  TTTTGCCATGCAGAAACATTTCAGGTAATGAGGTCCTACTTACTAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCATGCAGAAACATTTCAGGTAATGAGGTCCTACTTACTAATTTT  200

seq1  TGCCTTAGCGCTTCTGCTGATGTGTTTTCTGTGAAGAGAGTTTTCCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGCGCTTCTGCTGATGTGTTTTCTGTGAAGAGAGTTTTCCTATG  250

seq1  CCAATGCACTCAAGGCTATTCCGCACTCTCTCTTCTATCAGGTTCACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCACTCAAGGCTATTCCGCACTCTCTCTTCTATCAGGTTCACTGT  300

seq1  ATTCATTTTATTTTTACTTTTACTTTTACTTTTACTTTTACTTTTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTATTTTTACTTTTACTTTTACTTTTACTTTTACTTTTACTTT  350

seq1  TACTTTTACTTTTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTACTTTTATTTTTATTTTTATTTTTATTTTTATTTTTATTTTTG  400

seq1  CTGAGGTTTTGGATGCACTTTGTGTTTAGTTTTTTTTGTAGTGTGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTTTGGATGCACTTTGTGTTTAGTTTTTTTTGTAGTGTGATAAT  450

seq1  TACGGATCTACTTGAATTCTTTATATACAACCATCCTGATAGTGCAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGATCTACTTGAATTCTTTATATACAACCATCCTGATAGTGCAGCTC  500

seq1  TCAGTAGAAAAAAACAAAAAACAAATAAAGTTTGCACAGTGCCCAGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGAAAAAAACAAAAAACAAATAAAGTTTGCACAGTGCCCAGGGCA  550

seq1  AACCTCTCCTTGTAGAGGGTTTCTGAAAGAACAGTTGTCTAGGAGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCCTTGTAGAGGGTTTCTGAAAGAACAGTTGTCTAGGAGCATCT  600

seq1  AAAACAAACTGCCTGAAGTTAAATTGTGAGTCTATCCT-GGCAGTTTATG  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAACAAACTGCCTGAAGTTAAATTGTGAGTCTATCCTGGGCAGTTTATG  650

seq1  TTCTGCTGGAGATGGCTCTCTAAACAGCTCTCTTTTGATAGCTCTTGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGAGATGGCTCTCTAAACAGCTCTCTTTTGATAGCTCTTGGCT  700

seq1  CTGTAGTCTACTTGAGATATTCAGACTGTTCTTTGTTTCTGTGTTCTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTCTACTTGAGATATTCAGACTGTTCTTTGTTTCTGTGTTCTACT  750

seq1  CTGCTCTGTTCTAGACTGCCTTTTCTTGATACTATAAAAATCTTTCTAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTTCTAGACTGCCTTTTCTTGATACTATAAAAATCTTTCTAGT  800

seq1  TGAGAGAACTAGCTTTCTGCTCAAGACAGCTCACTCTGAGTGAGTCAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAACTAGCTTTCTGCTCAAGACAGCTCACTCTGAGTGAGTCAATT  850

seq1  TTCTCTGCAAGTAAAAATTCTAAAAGCTCTCTGGCTAGCTCATAGGTTTT  899
      |||||||| ||| |||||||| ||||||||||||||||||||||||||||
seq2  TTCTCTGC-AGT-AAAATTCT-AAAGCTCTCTGGCTAGCTCATAGGTTTT  897

seq1  CTGACCAAATTCAGAAGAAAAAAAAAATGCTGTAGAAAATTCCAGGATCT  949
      |||||||||||||||   ||||||||||||||||| |||||||| |||||
seq2  CTGACCAAATTCAGA--GAAAAAAAAATGCTGTAG-AAATTCCA-GATCT  943

seq1  TCTGACCAAGTAAGAAATCCTGTTATAAAAATTATAAACGTAATTCTTGG  999
      ||||||| ||| |||||||||||  | |||||||| ||| | ||||||||
seq2  TCTGACC-AGT-AGAAATCCTGT--TTAAAATTAT-AACCTTATTCTTGG  988

seq1  GTTTTACAATCAAAATTCAGAAAGACAGAAAAAATTATAAAGGAACTCTT  1049
        ||||||||| || |||||  |||| |||     ||||   | |||| |
seq2  --TTTACAATC-AATTTCAG--AGAC-GAA-----TATA---GGACTC-T  1023

seq1  TTAGCTCTCTGAGTAATTCCTGGGATTGCTGACATTCTGTTAGAAAA  1096
      |||||||||||||||||||  ||||| | |||| |||||||| ||| 
seq2  TTAGCTCTCTGAGTAATTCTGGGGATGGTTGAC-TTCTGTTAAAAA-  1068