BAC Information

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BAC

Clone NameB6Ng01-111A14
Chromosome14 (Build37)
Map Location 85,700,674 - 85,888,906
singlet/doubletdoublet
Overlap geneLOC668603
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111A14.bB6Ng01-111A14.g
ACCDH917491DH917492
length1,1161,114
definitionDH917491|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A14, 5' end.DH917492|Mus musculus domesticus DNA, BAC clone: B6Ng01-111A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,887,776 - 85,888,906)(85,700,674 - 85,701,802)
sequence
gaattctttcctacattagaagacagctgtttgtctgttgtgactgcaaa
agaaaaaaagagacaaatcattgtaaggaagacaataatcaacaataatt
aattattactatatatgatacccataaaagattaccaggctatccagaat
gataacctctcttgagtctagaagatcaaaaccccttttaaaaatagccc
tctacatggtatagctgctgggaatgcagtagatactcagtgctctaagc
tagtgttttagaccaggaaactccctaaagaggaatagcattcatatcac
actgacaagctaaagaatgtggagttggatattgtcagatagatagatat
caattacatgtgagatgatgtagtttctcaggaagaaattaaggtaggtg
ttaaatattacatttccctcagacctcactctatgtgaggtatccgttgg
aaggtttagtttactgtaatggggaccttccccttcagctaactccctgg
aaatcacttcacagagtctacctcagagatgtgcctcaggtggttccaga
tgccaccaaattgacaatccagctcattcttcaccatttctggagagaga
tgataatcatagcaatgtgcaattctactgacactacaaagagcttgaaa
agtgtgaaaaaatttagatggcaccataaccttttttttttttttaagct
gggtattttcaaagtattttttcgttggcaagtcaaatattaaactacat
aaaaatgtgagtaagcctccagttctttttaggaactacaaagttcctaa
ttttcaaaattctagtagggtaaagattatccattttgtttgaaattatg
cagttatctgggctttatcccgccatatttgccaggttcagtaagtggac
agtaatagttaatcaagttgttctgtcataatttcttctgttgtttgcct
gccccaccttcccacaataaatggaggtaggctaattcagctctatggtc
actttgtcagtgcagtaaagattcccactgagtctaagcaattagtctaa
cagtggtgaaaatgcgatcaatcttcatcatatctcttattttcctctga
ctatttttaggtttaa
gaattcagcagaaattttattccatatgtacttgcttaaaaattatgata
ttgacattattcttattaaaattattaagcttacaacatgtaattacatc
gatattagaagaatatcactgcataattaaataaatacaatgtgttcttt
gaatatgctaatatgattatttctgaaaaacattcagataatgttcattt
ttaaaatactcatatgttgtgaagtcttactgctttgaaaagaaattctt
acaggaaacattcattacacttaaagcacaagcagagtgctgttcttaga
ttcacaaatatacaaagactatctatgtgaatgtatttttaggtagcaat
gccttaacgaagtggagaatagattatacctttaaggaagaagaaatagt
ctctacataattctaacttgaaaaagtttaacgtgcttgatggcagcatt
agcaacattttctttcatttccctgtgagactaaaagaagaggcagcata
ttgttgctgctctgctctttcttcttccttgggctttgattgtaaggcca
gtgtgcctttttcatcttcctacagatctgactgcaaaaatctctgagga
aagctctctgtgcaggaaatgatacggtaaaaagaaagttcttccatttt
ctatataattttttttttcctctgtgagtctgtgatcagactctgagttt
tattatgattcctggttgcctaccaattttctttcacgaattataattcc
tgccttctaagttggttaggagcacatagctgcaaactagaaggacttcc
ttctttgagtgtccctctaatattacattattttctttaaataaaggggg
ttttacagtgaaatgaaagatgaaattatagatggatgttttcttcgaat
ttatgaataccaagcatcaggacacatttgttaaatgccactaaaacaca
gacactatctagtatgagagcatgtaaacatgaaatagagtcccgttaaa
atacacataatgagtgagcacaaaaatagtttaaagagatcaacatgata
ttacattctcagcaaagcatactatacttaaaaaatcacttatttagaaa
tgacgttcggtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85887776_85888906
seq2: B6Ng01-111A14.b_50_1165 (reverse)

seq1  TTAAAAACTAAAAATAGTCAGAGGAAAAATAAGAGATTATGATGAAGAGA  50
       | ||| ||||||||||||||||| ||||||||||| |||||||||||  
seq2  -TTAAACCTAAAAATAGTCAGAGG-AAAATAAGAGA-TATGATGAAGA-T  46

seq1  TGATCGCATTTTTCAACACTG-TAGACTAAATTGCTTTTAGACACCAGTG  99
      |||||||| |||||| ||||| |||||| ||||||  ||||||  |||||
seq2  TGATCGCA-TTTTCACCACTGTTAGACT-AATTGC--TTAGAC-TCAGTG  91

seq1  GGAATCTTTACTGGCACTTGAACAAAGTGACCATAGAGCTGAATTAGCCT  149
      |||||||||||| |||||   |||||||||||||||||||||||||||||
seq2  GGAATCTTTACT-GCACT--GACAAAGTGACCATAGAGCTGAATTAGCCT  138

seq1  ACCTCCATTTATTGTGGGGAAGGTGGGGCAGGCAAACAACAAGAAGAAAA  199
      ||||||||||||||| |||||||||||||||||||||||| |||||  ||
seq2  ACCTCCATTTATTGT-GGGAAGGTGGGGCAGGCAAACAAC-AGAAG--AA  184

seq1  ATTATGACAGAACAACTTGATTAACTATTACTGTCCACTTACTGAACCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACAGAACAACTTGATTAACTATTACTGTCCACTTACTGAACCTG  234

seq1  GCAAATATGGCGGGATAAAGCCCAGATAACTGCATAATTTCAAACAAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATGGCGGGATAAAGCCCAGATAACTGCATAATTTCAAACAAAAT  284

seq1  GGATAATCTTTACCCTACTAGAATTTTGAAAATTAGGAACTTTGTAGTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATCTTTACCCTACTAGAATTTTGAAAATTAGGAACTTTGTAGTTC  334

seq1  CTAAAAAGAACTGGAGGCTTACTCACATTTTTATGTAGTTTAATATTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGAACTGGAGGCTTACTCACATTTTTATGTAGTTTAATATTTGA  384

seq1  CTTGCCAACGAAAAAATACTTTGAAAATACCCAGCTTAAAAAAAAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAACGAAAAAATACTTTGAAAATACCCAGCTTAAAAAAAAAAAAA  434

seq1  AGGTTATGGTGCCATCTAAATTTTTTCACACTTTTCAAGCTCTTTGTAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGGTGCCATCTAAATTTTTTCACACTTTTCAAGCTCTTTGTAGT  484

seq1  GTCAGTAGAATTGCACATTGCTATGATTATCATCTCTCTCCAGAAATGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAGAATTGCACATTGCTATGATTATCATCTCTCTCCAGAAATGGT  534

seq1  GAAGAATGAGCTGGATTGTCAATTTGGTGGCATCTGGAACCACCTGAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGAGCTGGATTGTCAATTTGGTGGCATCTGGAACCACCTGAGGC  584

seq1  ACATCTCTGAGGTAGACTCTGTGAAGTGATTTCCAGGGAGTTAGCTGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGAGGTAGACTCTGTGAAGTGATTTCCAGGGAGTTAGCTGAAG  634

seq1  GGGAAGGTCCCCATTACAGTAAACTAAACCTTCCAACGGATACCTCACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTCCCCATTACAGTAAACTAAACCTTCCAACGGATACCTCACAT  684

seq1  AGAGTGAGGTCTGAGGGAAATGTAATATTTAACACCTACCTTAATTTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGGTCTGAGGGAAATGTAATATTTAACACCTACCTTAATTTCTT  734

seq1  CCTGAGAAACTACATCATCTCACATGTAATTGATATCTATCTATCTGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAACTACATCATCTCACATGTAATTGATATCTATCTATCTGACA  784

seq1  ATATCCAACTCCACATTCTTTAGCTTGTCAGTGTGATATGAATGCTATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCAACTCCACATTCTTTAGCTTGTCAGTGTGATATGAATGCTATTC  834

seq1  CTCTTTAGGGAGTTTCCTGGTCTAAAACACTAGCTTAGAGCACTGAGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGGGAGTTTCCTGGTCTAAAACACTAGCTTAGAGCACTGAGTAT  884

seq1  CTACTGCATTCCCAGCAGCTATACCATGTAGAGGGCTATTTTTAAAAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCATTCCCAGCAGCTATACCATGTAGAGGGCTATTTTTAAAAGGG  934

seq1  GTTTTGATCTTCTAGACTCAAGAGAGGTTATCATTCTGGATAGCCTGGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATCTTCTAGACTCAAGAGAGGTTATCATTCTGGATAGCCTGGTA  984

seq1  ATCTTTTATGGGTATCATATATAGTAATAATTAATTATTGTTGATTATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATGGGTATCATATATAGTAATAATTAATTATTGTTGATTATTG  1034

seq1  TCTTCCTTACAATGATTTGTCTCTTTTTTTCTTTTGCAGTCACAACAGAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTACAATGATTTGTCTCTTTTTTTCTTTTGCAGTCACAACAGAC  1084

seq1  AAACAGCTGTCTTCTAATGTAGGAAAGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  AAACAGCTGTCTTCTAATGTAGGAAAGAATTC  1116

seq1: chr14_85700674_85701802
seq2: B6Ng01-111A14.g_70_1183

seq1  GAATTCAGCAGAAATTTTATTCCATATGTACTTGCTTAAAAATTATGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAAATTTTATTCCATATGTACTTGCTTAAAAATTATGATA  50

seq1  TTGACATTATTCTTATTAAAATTATTAAGCTTACAACATGTAATTACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTATTCTTATTAAAATTATTAAGCTTACAACATGTAATTACATC  100

seq1  GATATTAGAAGAATATCACTGCATAATTAAATAAATACAATGTGTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTAGAAGAATATCACTGCATAATTAAATAAATACAATGTGTTCTTT  150

seq1  GAATATGCTAATATGATTATTTCTGAAAAACATTCAGATAATGTTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGCTAATATGATTATTTCTGAAAAACATTCAGATAATGTTCATTT  200

seq1  TTAAAATACTCATATGTTGTGAAGTCTTACTGCTTTGAAAAGAAATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATACTCATATGTTGTGAAGTCTTACTGCTTTGAAAAGAAATTCTT  250

seq1  ACAGGAAACATTCATTACACTTAAAGCACAAGCAGAGTGCTGTTCTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAACATTCATTACACTTAAAGCACAAGCAGAGTGCTGTTCTTAGA  300

seq1  TTCACAAATATACAAAGACTATCTATGTGAATGTATTTTTAGGTAGCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAATATACAAAGACTATCTATGTGAATGTATTTTTAGGTAGCAAT  350

seq1  GCCTTAACGAAGTGGAGAATAGATTATACCTTTAAGGAAGAAGAAATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAACGAAGTGGAGAATAGATTATACCTTTAAGGAAGAAGAAATAGT  400

seq1  CTCTACATAATTCTAACTTGAAAAAGTTTAACGTGCTTGATGGCAGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATAATTCTAACTTGAAAAAGTTTAACGTGCTTGATGGCAGCATT  450

seq1  AGCAACATTTTCTTTCATTTCCCTGTGAGACTAAAAGAAGAGGCAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATTTTCTTTCATTTCCCTGTGAGACTAAAAGAAGAGGCAGCATA  500

seq1  TTGTTGCTGCTCTGCTCTTTCTTCTTCCTTGGGCTTTGATTGTAAGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTGCTCTGCTCTTTCTTCTTCCTTGGGCTTTGATTGTAAGGCCA  550

seq1  GTGTGCCTTTTTCATCTTCCTACAGATCTGACTGCAAAAATCTCTGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTTTTTCATCTTCCTACAGATCTGACTGCAAAAATCTCTGAGGA  600

seq1  AAGCTCTCTGTGCAGGAAATGATACGGTAAAAAGAAAGTTCTTCCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTCTGTGCAGGAAATGATACGGTAAAAAGAAAGTTCTTCCATTTT  650

seq1  CTATATAA-TTTTTTTTTCCTCTGTGAGTCTGTGATCAGACTCTGAGTTT  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAATTTTTTTTTTCCTCTGTGAGTCTGTGATCAGACTCTGAGTTT  700

seq1  TATTATGATTCCTGGTTGCCTACCAATTTTCTTTCACGAATTATAATTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATTCCTGGTTGCCTACCAATTTTCTTTCACGAATTATAATTCC  750

seq1  TGCCTTCTAAGTTGGTTAGGAGCACATAGCTGCAAACTAGAAGGACTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTAAGTTGGTTAGGAGCACATAGCTGCAAACTAGAAGGACTTCC  800

seq1  TTCTTTGAGTGTCCCTCTAATATTACATTATTTTCTTTAAATAAAGGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAGTGTCCCTCTAATATTACATTATTTTCTTTAAATAAAGGGGG  850

seq1  TTTTACAGTGAAATGAAAGATGAAATTATAGATGGATGTTTTCTTCGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGTGAAATGAAAGATGAAATTATAGATGGATGTTTTCTTCGAAT  900

seq1  TTAATGAATACCAAGCAATCAGGGACACATTTGTTAAATGCCACTAAAAC  949
      || ||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  TT-ATGAATACCAAGC-ATCA-GGACACATTTGTTAAATGCCACTAAAAC  947

seq1  ACAGAACACTATCTAGTATGAGAGCATGTAAACATGAAATTAGAGTTCCC  999
      |||| |||||||||||||||||||||||||||||||||| ||||| ||||
seq2  ACAG-ACACTATCTAGTATGAGAGCATGTAAACATGAAA-TAGAG-TCCC  994

seq1  GTTAAAATACACATAAAATGAGTGAGCAACAAAAATAGTTTATAGAGATC  1049
      ||||||||||||||  ||||||||||| |||||||||||||| |||||||
seq2  GTTAAAATACACAT--AATGAGTGAGC-ACAAAAATAGTTTAAAGAGATC  1041

seq1  AAACATGATA-TACA-TCTCAGCAAAAGCAATACTATAACCTTAAAATAA  1097
       ||||||||| |||| ||||||| ||||| ||||||||  ||||||| ||
seq2  -AACATGATATTACATTCTCAGC-AAAGC-ATACTATA--CTTAAAA-AA  1085

seq1  TCCAACTTATTTAGAAATGACGTTCGGGTAGC  1129
      ||  ||||||||||||||||||||| ||||||
seq2  TC--ACTTATTTAGAAATGACGTTC-GGTAGC  1114