BAC Information

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BAC

Clone NameB6Ng01-111E08
Chromosome14 (Build37)
Map Location 108,396,029 - 108,397,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754
Downstream geneLOC668757, EG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111E08.bB6Ng01-111E08.g
ACCDH917659DH917660
length1,2391,010
definitionDH917659|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E08, 5' end.DH917660|Mus musculus domesticus DNA, BAC clone: B6Ng01-111E08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactctgcagcctgtcttatgacttagcttctctgggtctgtgag
tgatagcattatgtcttttacttttcagctgtgagtacataacatctttg
cctttctgcatctgggttaccactctcatgatgatttatttatttttttt
ctagttccattcatttgcctacaaatgtgtgatattattgtttttaacat
ctgcttctatgactgtagttgagtcaccaagtgtacttgtggcattatgg
agagacctttgcatataggccaatgactggtatagttggtttttgaggta
gatctgtttccagtttcctgagaaaccacaatattgacttgcaacctcct
tcagcctagataggctggatcagactgtacaccactgaggcaggtccacc
tgctgtgctgcttctcatcactctcctttgatgtgagactgcctgccacc
tgcctgaggcctaacccattctccaagattttctgaagttagctgcagaa
ctgtgaatttctttctgctaaagggctgttctgacacttctcatctctac
ttaaagaaacttggtgtgactctcctctttataagcacagatttttttat
taaacatttgaaccttgagcagactagcttgtcttgcttccattatttct
ctacccgcctagatatcctcttctctttcagctccaagatgcctcccagg
ctagaaccccgacatgagagctgcaggcaggccccaacattgacttgtaa
agtgtctgtgaaaggttgcattcccatcatcagtggagaagtgttcccct
agctctacatcaatgtcagcctaagtttcatttgtatttcttatcatagt
ccttttaaattgtgtaagatggaatctcaaagtgtatttgatttgcattc
cttatggctaagatgctgaacacctttcagggattatttggtttgttgat
gtttgtttcttgagttctttatttattttgaaattagccctttgtaaatg
atgagttgtgaaaaatctttccccattttgtgggttttgttttgttctat
tgattattgtttcttgatttaagaagcattcatctcatgagtttaattcc
atttttaatatttttataggatgcccatttcatttccagcatacattgcc
caactttcccccattgcctaaccaatcaattggcacttggttaccggtac
taggcatataacgtgtgcgaaggtacgagggcccttctc
gaattcttatgtccttatgcagagtaagagaagaactgtgtgaccaatgg
taagtcaacaagattgacctcatacacacacatggatgattctgtgatat
ggtaagttacatcaaagaataaaactgaattataaatgctttttatatat
tttaaaattaactttaagggtatttagaattacttcaggcatttcatctg
ctgcttgatttatttgtataattcattattaattgataagattaaagaat
gccatcttgaaattacacatttattttattattattttttcactctacat
cccgctcactgctgtcaccagatcaccccttcccctaatccttacactat
tacccctccccttttcctctgagaaggtggggcttccttgaatatcccat
caacctggcacatcaactctttgcctggcttattgaatattcacctactg
acactaaataaggaaatccagcaagaagaacatatcccatgaccaggcaa
tagtttttgggatagccccatctccattttttcggaacacactgaagacc
aagttgcacatctgctacatattgtgtggggagaccggggtccagtccat
gtatgctcattggttgatgattcagtctctgagagatccaaagttccaaa
tgtaagttgactctgttgggtttcctgcgaattttctattcctttagtgc
cctgaattcttcccattactctttgaaaaaagtccccaaactgcattcac
tgttcgtgtgtgggtgtctgcatctctctgagtcagctgctgggtgaagc
ctcttagaggacagccatactagactccagtctacaaaaacaagagagta
tcattagtagtttcaggattgatgcttgctcatgcgatagtctcaaggtg
gtccagtaattgtttggtcatttcctcagtctctgtccattccctattct
gcatgaaactacatgaaactacgcatttttttggaacagtcttttttttg
ggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_108396029_108397044
seq2: B6Ng01-111E08.g_69_1078

seq1  GAATTCTTATGTCCTTATGCAGAGTAAGAGAAGAACTGTGTGACCAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTCCTTATGCAGAGTAAGAGAAGAACTGTGTGACCAATGG  50

seq1  TAAGTCAACAAGATTGACCTCATACACACACATGGATGATTCTGTGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAACAAGATTGACCTCATACACACACATGGATGATTCTGTGATAT  100

seq1  GGTAAGTTACATCAAAGAATAAAACTGAATTATAAATGCTTTTTATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTACATCAAAGAATAAAACTGAATTATAAATGCTTTTTATATAT  150

seq1  TTTAAAATTAACTTTAAGGGTATTTAGAATTACTTCAGGCATTTCATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTAACTTTAAGGGTATTTAGAATTACTTCAGGCATTTCATCTG  200

seq1  CTGCTTGATTTATTTGTATAATTCATTATTAATTGATAAGATTAAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGATTTATTTGTATAATTCATTATTAATTGATAAGATTAAAGAAT  250

seq1  GCCATCTTGAAATTACACATTTATTTTATTATTATTTTTTCACTCTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTGAAATTACACATTTATTTTATTATTATTTTTTCACTCTACAT  300

seq1  CCCGCTCACTGCTGTCACCAGATCACCCCTTCCCCTAATCCTTACACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTCACTGCTGTCACCAGATCACCCCTTCCCCTAATCCTTACACTAT  350

seq1  TACCCCTCCCCTTTTCCTCTGAGAAGGTGGGGCTTCCTTGAATATCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTCCCCTTTTCCTCTGAGAAGGTGGGGCTTCCTTGAATATCCCAT  400

seq1  CAACCTGGCACATCAACTCTTTGCCTGGCTTATTGAATATTCACCTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGCACATCAACTCTTTGCCTGGCTTATTGAATATTCACCTACTG  450

seq1  ACACTAAATAAGGAAATCCAGCAAGAAGAACATATCCCATGACCAGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAATAAGGAAATCCAGCAAGAAGAACATATCCCATGACCAGGCAA  500

seq1  TAGTTTTTGGGATAGCCCCATCTCCATTTTTTCGGAACACACTGAAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGGGATAGCCCCATCTCCATTTTTTCGGAACACACTGAAGACC  550

seq1  AAGTTGCACATCTGCTACATATTGTGTGGGGAGACCGGGGTCCAGTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCACATCTGCTACATATTGTGTGGGGAGACCGGGGTCCAGTCCAT  600

seq1  GTATGCTCATTGGTTGATGATTCAGTCTCTGAGAGATCCAAAGTTCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCATTGGTTGATGATTCAGTCTCTGAGAGATCCAAAGTTCCAAA  650

seq1  TGTAAGTTGACTCTGTTGGGTTTCCTGCGAATTTTCTATTCCTTTAGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTGACTCTGTTGGGTTTCCTGCGAATTTTCTATTCCTTTAGTGC  700

seq1  CCTGAATTCTTCCCATTACTCTTTGAAAAAAGTCCCCAAACTGCATTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTCTTCCCATTACTCTTTGAAAAAAGTCCCCAAACTGCATTCAC  750

seq1  TGTTCGTGTGTGGGTGTCTGCATCTCTCTGAGTCAGCTGCTGGGTGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTGTGTGGGTGTCTGCATCTCTCTGAGTCAGCTGCTGGGTGAAGC  800

seq1  CTCTTAGAGGACAGCCATACTAGACTCCAGTCTACAAAAACAAGAGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGAGGACAGCCATACTAGACTCCAGTCTACAAAAACAAGAGAGTA  850

seq1  TCATTAGTAGTTTCAGGGATTGATGCTTGCTCATGCGATTAGTCTCAAGG  900
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  TCATTAGTAGTTTCA-GGATTGATGCTTGCTCATGCGA-TAGTCTCAAGG  898

seq1  TGGTCCAGTAATTGTTTGGTCATTTCCTCAGTCTCTGTTCCATTCCCTAT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGGTCCAGTAATTGTTTGGTCATTTCCTCAGTCTCTG-TCCATTCCCTAT  947

seq1  TCCTGCATGAAACTACAATGAAACTACGCATTTTTTTGGAACAGTCTTTT  1000
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  T-CTGCATGAAACTAC-ATGAAACTACGCATTTTTTTGGAACAGTCTTTT  995

seq1  TTTTGGGGGGGGTGGG  1016
      |||| |||||||||||
seq2  TTTT-GGGGGGGTGGG  1010