BAC Information

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BAC

Clone NameB6Ng01-111H09
Chromosome14 (Build37)
Map Location 29,147,012 - 29,302,489
singlet/doubletdoublet
Overlap geneErc2, LOC100040206
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneWnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111H09.bB6Ng01-111H09.g
ACCDH917800DH917801
length6841,112
definitionDH917800|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H09, 5' end.DH917801|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,147,012 - 29,147,692)(29,301,354 - 29,302,489)
sequence
gaattcctctgccaaaggggttgccatccgcagaaaataagctcctcttt
cctctgggctcttctgccctgcgcagcaccagaggcagatcccagggggc
tgcacatggttaagatctggtttgtaggatctggcttttcagagccctct
ttgttttgttctattttaaaatatagcaaggttgcctgcattccaaatct
tccttgcctgcactctataatgaaaagcatttccttcctgcccatccaca
gtaaagaaagagtgggctgaatcttgtatatactgggttgagtcgtgagt
ttggtagacttgttttaattggcagtggggttgggggaggggcatgcttt
cccctcttgaaaagaccatttgctttattctttcagtatgtattgatcgt
ctactgtgtgccgaatctaaagggcttccgtctctgtctttctggtcaga
attcacctccaaggctgtctgccagtgattttatgtttctcttctgcagt
gtaacaggcccctgctgatcagtacatgtgcccttttgtgtgcatctaca
acacatgtatgaagcatttaccacattgtataatgcaggttcctggggag
tttgtatttttctcctcacagctcctctgggtaaccattctacttcagag
tggttagttgtacccacctcagtgttttctagtg
gaattcactacctttgccaaatctgcgtagggtcttggctttcctcatgg
ccgtgacataatgcctggtgtaaacaactttagggagatgaggatggctt
tagttcctgggttttgagggatttggtccatgtgcttgggatcatcacag
ctgtaagactatggcgaacaggaaggaaatagagaacagcagaatacaag
aaggagcagcgtgtaatatagtccccaaagatatgccttcaaagtgaccc
cctctcttccaactaagcctgcctacaacctttcaccatttcttcacaat
gtccacccagcgttaatccattcattaagtcaaagccttcatgagttgtc
tctaaactaaaagacataaaacttgatagaaaacacacagacgatgtgta
cttttttctctcagacagcagtgcagatagcagaactctatggtcagata
aggagggggatccagcctctccttgaaatcactgggtggcacttggtggc
ttctttaacctcactaaaccttggatctgtaaatgggatgactcaaggta
cccaccttgctgggcttttgcaatgatagaacaagaaagcatactcttgg
tgtttagcataacatttggcatgcatcttgttcttagtcaatggagtact
gcaccttgaaacccataaggcttaaatcagtcaagacagaaaaatggatt
gtggaaatttgcacaaatccccaacacaaagtttttgttttgctttgttt
tccttttgatttgtcatttttgtaaatctggagggctcacaaagaggctg
ttgttagtggaagggctatagggtagccagactcttgataagcccacatt
ctgatggagggagggcttgggattgaataggaccaaccagtgatcatcac
acctgacagcactaaggagccatgcagagactgtacacagtctatgactg
ttaatatctctgacagattgtcacctgtcttgctaagtatcagagtaaag
gagatcaattgagatgcttgggtcaccacccaggagtacagagaaggtct
cagccttgctgttgaatccaccacctcaagtcagtctatgcatgctaggc
cgatgctctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_29147012_29147692
seq2: B6Ng01-111H09.b_45_728

seq1  GAATTCCTCTGCCAAAGGGGTTGCCAT-TGCAGAAAATAAGCTCCTCTTT  49
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GAATTCCTCTGCCAAAGGGGTTGCCATCCGCAGAAAATAAGCTCCTCTTT  50

seq1  CCTCTGGGCTCTTCTGCCCTGCGCAGCACCAGAGGCAGATCCCAGGGGGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGCTCTTCTGCCCTGCGCAGCACCAGAGGCAGATCCCAGGGGGC  100

seq1  TGCACATGGTTAAGATCTGGTTTGTAGGATCTGGCTTTTCAGAGCCCTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGGTTAAGATCTGGTTTGTAGGATCTGGCTTTTCAGAGCCCTCT  150

seq1  TTGTTTTGTTCTATTTTAAAATATAGCAAGGTTGCCTGCATTCCAAATCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTCTATTTTAAAATATAGCAAGGTTGCCTGCATTCCAAATCT  200

seq1  TCCTTGCCTGCACTCTATAATGAAAAGCATTTCCTTCCTGCCCATCCACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCTGCACTCTATAATGAAAAGCATTTCCTTCCTGCCCATCCACA  250

seq1  GTAAAGAAAGAGTGGGCTGAATCTTGTATATACTGGGTTGAGTCGTGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAAGAGTGGGCTGAATCTTGTATATACTGGGTTGAGTCGTGAGT  300

seq1  TTGGTAGACTTGTTTTAATTGGCAGTGGGGTTGGGGGAGGGGCATGCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGACTTGTTTTAATTGGCAGTGGGGTTGGGGGAGGGGCATGCTTT  350

seq1  CCCCTCTTGAAAAGACCATTTGCTTTATTCTTTCAGTATGTATTGATCGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTGAAAAGACCATTTGCTTTATTCTTTCAGTATGTATTGATCGT  400

seq1  CTACTGTGTGCCGAATCTAAAGGGCTTCCGTCTCTGTCTTTCTGGTCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTGCCGAATCTAAAGGGCTTCCGTCTCTGTCTTTCTGGTCAGA  450

seq1  ATTCACCTCCAAGGCTGTCTGCCAGTGATTTTATGTTTCTCTTCTGCAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTCCAAGGCTGTCTGCCAGTGATTTTATGTTTCTCTTCTGCAGT  500

seq1  GTAACAGGCCCCTGCTGATCAGTACATGTGCCC-TTTGTGTGCATCTACA  548
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAACAGGCCCCTGCTGATCAGTACATGTGCCCTTTTGTGTGCATCTACA  550

seq1  ACACATGTATGAAGCATTTACCACATTGTATAATGCAGGTTCCT-GGGAG  597
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACATGTATGAAGCATTTACCACATTGTATAATGCAGGTTCCTGGGGAG  600

seq1  TTTGTATTTTTCTCCTCACAGCTCCTCTGGGTAACCATTCTACTTCAGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTTTCTCCTCACAGCTCCTCTGGGTAACCATTCTACTTCAGAG  650

seq1  TGGTTAGTTGGACCCACCTCAGTGTTTTCTAGTG  681
      |||||||||| |||||||||||||||||||||||
seq2  TGGTTAGTTGTACCCACCTCAGTGTTTTCTAGTG  684

seq1: chr14_29301354_29302489
seq2: B6Ng01-111H09.g_71_1182 (reverse)

seq1  CTCAGAGCATTTCTGCCCTAGCAATGCATAGACTGACTTTGAGGGTGGGT  50
      ||||||||||    | |||||| |||||||||||||| ||||||   |||
seq2  CTCAGAGCAT---CGGCCTAGC-ATGCATAGACTGAC-TTGAGG--TGGT  43

seq1  GGGTATCACACAGGCCAGGGCTGAGACCTGTCTCTGCTACTTCCTGGGTG  100
      || | ||| ||||  || ||||||||||| |||||| ||| |||||||| 
seq2  GGAT-TCA-ACAG--CAAGGCTGAGACCT-TCTCTG-TAC-TCCTGGGT-  85

seq1  GGTGACCCCAAGCATCTCATTTGATCTCCCTGTACCTCCTTGATACCTAG  150
      ||||| ||||||||||||| ||||||| ||| || |||  |||||| |||
seq2  GGTGA-CCCAAGCATCTCAATTGATCT-CCTTTA-CTC--TGATACTTAG  130

seq1  CAAGAACAGGTGACAATCTGTCAGGAGATATTAACAGTCATAGACTGTGT  200
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAG-ACAGGTGACAATCTGTCA-GAGATATTAACAGTCATAGACTGTGT  178

seq1  AACAGTCTCTGCATGGCTCCCTTAGTGCTGTCAGGTGTGATGATCACTGG  250
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -ACAGTCTCTGCATGGCT-CCTTAGTGCTGTCAGGTGTGATGATCACTGG  226

seq1  TTGGTCCTTATTCAAT-CCAAGCCCTCCCTCCATCAGAATGTGGGCTTAT  299
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGTCC-TATTCAATCCCAAGCCCTCCCTCCATCAGAATGTGGGCTTAT  275

seq1  CAAGAGTCTGGCTACCCTATAGCCC-TCCACTAACAACAGCCTCTTTTGT  348
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  CAAGAGTCTGGCTACCCTATAGCCCTTCCACTAACAACAGCCTC-TTTGT  324

seq1  GAGCCCTCCAGATTTACAAAAATGACAAATCAAAAGGAAAACAAAGCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCCAGATTTACAAAAATGACAAATCAAAAGGAAAACAAAGCAAA  374

seq1  ACAAAAACTTTGTGTTGGGGATTTGTGCAAATTTCCACAATCCATTTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTTTGTGTTGGGGATTTGTGCAAATTTCCACAATCCATTTTTC  424

seq1  TGTCTTGACTGATTTAAGCCTTATGGGTTTCAAGGTGCAGTACTCCATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGACTGATTTAAGCCTTATGGGTTTCAAGGTGCAGTACTCCATTG  474

seq1  ACTAAGAACAAGATGCATGCCAAATGTTATGCTAAACACCAAGAGTATGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGAACAAGATGCATGCCAAATGTTATGCTAAACACCAAGAGTATGC  524

seq1  TTTCTTGTTCTATCATTGCAAAAGCCCAGCAAGGTGGGTACCTTGAGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTTCTATCATTGCAAAAGCCCAGCAAGGTGGGTACCTTGAGTCA  574

seq1  TCCCATTTACAGATCCAAGGTTTAGTGAGGTTAAAGAAGCCACCAAGTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTACAGATCCAAGGTTTAGTGAGGTTAAAGAAGCCACCAAGTGC  624

seq1  CACCCAGTGATTTCAAGGAGAGGCTGGATCCCCCTCCTTATCTGACCATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGATTTCAAGGAGAGGCTGGATCCCCCTCCTTATCTGACCATA  674

seq1  GAGTTCTGCTATCTGCACTGCTGTCTGAGAGAAAAAAGTACACATCGTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGCTATCTGCACTGCTGTCTGAGAGAAAAAAGTACACATCGTCT  724

seq1  GTGTGTTTTCTATCAAGTTTTATGTCTTTTAGTTTAGAGACAACTCATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTCTATCAAGTTTTATGTCTTTTAGTTTAGAGACAACTCATGA  774

seq1  AGGCTTTGACTTAATGAATGGATTAACGCTGGGTGGACATTGTGAAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGACTTAATGAATGGATTAACGCTGGGTGGACATTGTGAAGAAA  824

seq1  TGGTGAAAGGTTGTAGGCAGGCTTAGTTGGAAGAGAGGGGGTCACTTTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAGGTTGTAGGCAGGCTTAGTTGGAAGAGAGGGGGTCACTTTGA  874

seq1  AGGCATATCTTTGGGGACTATATTACACGCTGCTCCTTCTTGTATTCTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATCTTTGGGGACTATATTACACGCTGCTCCTTCTTGTATTCTGC  924

seq1  TGTTCTCTATTTCCTTCCTGTTCGCCATAGTCTTACAGCTGTGATGATCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTATTTCCTTCCTGTTCGCCATAGTCTTACAGCTGTGATGATCC  974

seq1  CAAGCACATGGACCAAATCCCTCAAAACCCAGGAACTAAAGCCATCCTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACATGGACCAAATCCCTCAAAACCCAGGAACTAAAGCCATCCTCA  1024

seq1  TCTCCCTAAAGTTGTTTACACCAGGCATTATGTCACGGCCATGAGGAAAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAAAGTTGTTTACACCAGGCATTATGTCACGGCCATGAGGAAAG  1074

seq1  CCAAGACCCTACGCAGATTTGGCAAAGGTAGTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCCTACGCAGATTTGGCAAAGGTAGTGAATTC  1112