BAC Information

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BAC

Clone NameB6Ng01-111P18
Chromosome14 (Build37)
Map Location 55,423,704 - 55,557,311
singlet/doubletdoublet
Overlap geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5
Upstream geneLOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
Downstream geneMyh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111P18.bB6Ng01-111P18.g
ACCDH918175DH918176
length1,086632
definitionDH918175|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P18, 5' end.DH918176|Mus musculus domesticus DNA, BAC clone: B6Ng01-111P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,556,228 - 55,557,311)(55,423,704 - 55,424,335)
sequence
gaattcctgcctattttcctgtctgctcctcggagactgaattcctgccc
aaggatgcctccggacatgtcaaatatttccaaggaagtgagctcagaac
cttacccagagaggatggaagcagataaatctagatcaaccaggaggcag
aggggagaccaggaaacagaccacatggagcgggactgagctaggccttt
tatgtgtgggaggacaggtctaaggtctgtacatactccttgacaatccc
ccttgacaagggcacactcatgggtgtcaaaaattcacgtctgagcacag
gacacaacgcgagtcaaagcacagctcagttgtagaaatgaaggggagtc
acagggctataggaaaattgggcaaacaaggagaaggaagagaccaggat
gggggtgggagaggcaacgttcctcaccagacaaggccagttgagcctat
cgaagcgctggtagtactgcgtggcgcagaggaagaggaaggccagtgtg
atgaggaactctagcaacgctgcagccatgtaggcagagatggaggccgt
gaagcaaatgaagatgatgaaggtcagggcctgcaggaccaagtacgggg
agctttctgaggagacacatgcgtaggccaggccatggtttgcctgtggt
tagggggctcctcttctcagctggtacttctaccccagcctcactgagaa
ggaagagttctcagtgaagacacagaagtgactcatccctagtgtcaggg
accatcaagggcatctccatcctcccactcctgctatcccaggaatctca
gcaactccatcagtttggtatccgcagagccccagggaagtccccggggg
acacagaacacaaggtacacaccagcccacagtacctctgccctacaaag
cttttccctattcctgatggctaaaagtcagatgccaagaagcagaattc
catgctgagagagcttagaaggcaagatcttgcttactaatagaccgcag
aataggaacgacagcctggggtgagcactgtgatctgctcagtaccaagg
ccagccctgaagctaatgggcaatgggccactactg
gaattcaagagctatggggtcatggaggcttccacctagattgcaaagga
aggccagacagtatgtggcagaatcagaaaccacctcggcggcctctgag
agggtgcttgtaagctgtgagagtgaagcctgagactcagtggaacctag
gaagctggagatacaggactatagactgtctgctgaggaaagatgcaggc
accaagcagttagctcaggagagacttcatgtggccataggagaaggatc
atgtaggacctttggggtccacacgtcccagatgcagcacatgaagctac
aggacttagtgtctgtttgggtttgctttggtccaagattcctattcatg
tatcctgtccttttggaacagggaggtttattctgtgtgttggaagtatg
taatttgctttttttttttttttgctcttttcatattttaatgatgacat
gcattttaatcatttaaattttattatttagttagagtaataaccttaga
aaagagatatgcatatatatcaaaagatggcctagtcggccatcactgga
aagagaggcccattggacttgcaaactttatatgccccagtacaggggaa
caccagggccaaaaagggggagtgggtgggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55556228_55557311
seq2: B6Ng01-111P18.b_51_1136 (reverse)

seq1  CAGTAGTGGCCCATTGCCATCTAGTCTCAGGCTTGCCCTGGTTACTGAGC  50
      ||||||||||||||||||   |||  |||||  || ||| | ||||||||
seq2  CAGTAGTGGCCCATTGCCCATTAGCTTCAGGGCTGGCCTTGGTACTGAGC  50

seq1  AAGATCACAGTGCTCA-CCCAGGCTGTCGTTCCTA-TCTGCCGGTCTATA  98
       ||||||||||||||| |||||||||||||||||| |||| |||||||| 
seq2  -AGATCACAGTGCTCACCCCAGGCTGTCGTTCCTATTCTG-CGGTCTATT  98

seq1  AGTTAGCAAGATCCTGCCTTCTAAGCCTCTCTCAGCATGGAA-TCTGC-T  146
      ||| ||||||||| ||||||||||| |||||||||||||||| ||||| |
seq2  AGTAAGCAAGATCTTGCCTTCTAAG-CTCTCTCAGCATGGAATTCTGCTT  147

seq1  CTTGGCATCTGACTTTTAGCCATCAGGAATAGGG-AAAGCTTTGTAGGGC  195
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGGCATCTGACTTTTAGCCATCAGGAATAGGGAAAAGCTTTGTAGGGC  197

seq1  AGAGGTACTGTGGGCTGGTGTGTACCTTGTGTTCTGTGTCCCCCGGGGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACTGTGGGCTGGTGTGTACCTTGTGTTCTGTGTCCCCCGGGGAC  247

seq1  TTCCCTGGGGCTCTGCGGATACCAAACTGATGGAGTTGCTGAGATTCCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGGGCTCTGCGGATACCAAACTGATGGAGTTGCTGAGATTCCTG  297

seq1  GGATAGCAGGAGTGGGAGGATGGAGATGCCCTTGATGGTCCCTGACACTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCAGGAGTGGGAGGATGGAGATGCCCTTGATGGTCCCTGACACTA  347

seq1  GGGATGAGTCACTTCTGTGTCTTCACTGAGAACTCTTCCTTCTCAGTGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGAGTCACTTCTGTGTCTTCACTGAGAACTCTTCCTTCTCAGTGAG  397

seq1  GCTGGGGTAGAAGTACCAGCTGAGAAGAGGAGCCCCCTAACCACAGGCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGTAGAAGTACCAGCTGAGAAGAGGAGCCCCCTAACCACAGGCAA  447

seq1  ACCATGGCCTGGCCTACGCATGTGTCTCCTCAGAAAGCTCCCCGTACTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCCTGGCCTACGCATGTGTCTCCTCAGAAAGCTCCCCGTACTTG  497

seq1  GTCCTGCAGGCCCTGACCTTCATCATCTTCATTTGCTTCACGGCCTCCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAGGCCCTGACCTTCATCATCTTCATTTGCTTCACGGCCTCCAT  547

seq1  CTCTGCCTACATGGCTGCAGCGTTGCTAGAGTTCCTCATCACACTGGCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTACATGGCTGCAGCGTTGCTAGAGTTCCTCATCACACTGGCCT  597

seq1  TCCTCTTCCTCTGCGCCACGCAGTACTACCAGCGCTTCGATAGGCTCAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCTCTGCGCCACGCAGTACTACCAGCGCTTCGATAGGCTCAAC  647

seq1  TGGCCTTGTCTGGTGAGGAACGTTGCCTCTCCCACCCCCATCCTGGTCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTCTGGTGAGGAACGTTGCCTCTCCCACCCCCATCCTGGTCTC  697

seq1  TTCCTTCTCCTTGTTTGCCCAATTTTCCTATAGCCCTGTGACTCCCCTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCCTTGTTTGCCCAATTTTCCTATAGCCCTGTGACTCCCCTTC  747

seq1  ATTTCTACAACTGAGCTGTGCTTTGACTCGCGTTGTGTCCTGTGCTCAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACAACTGAGCTGTGCTTTGACTCGCGTTGTGTCCTGTGCTCAGA  797

seq1  CGTGAATTTTTGACACCCATGAGTGTGCCCTTGTCAAGGGGGATTGTCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAATTTTTGACACCCATGAGTGTGCCCTTGTCAAGGGGGATTGTCAA  847

seq1  GGAGTATGTACAGACCTTAGACCTGTCCTCCCACACATAAAAGGCCTAGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGTACAGACCTTAGACCTGTCCTCCCACACATAAAAGGCCTAGC  897

seq1  TCAGTCCCGCTCCATGTGGTCTGTTTCCTGGTCTCCCCTCTGCCTCCTGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCCGCTCCATGTGGTCTGTTTCCTGGTCTCCCCTCTGCCTCCTGG  947

seq1  TTGATCTAGATTTATCTGCTTCCATCCTCTCTGGGTAAGGTTCTGAGCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTAGATTTATCTGCTTCCATCCTCTCTGGGTAAGGTTCTGAGCTC  997

seq1  ACTTCCTTGGAAATATTTGACATGTCCGGAGGCATCCTTGGGCAGGAATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGGAAATATTTGACATGTCCGGAGGCATCCTTGGGCAGGAATT  1047

seq1  CAGTCTCCGAGGAGCAGACAGGAAAATAGGCAGGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCGAGGAGCAGACAGGAAAATAGGCAGGAATTC  1086

seq1: chr14_55423704_55424335
seq2: B6Ng01-111P18.g_71_702

seq1  GAATTCAAGAGCTATGGGGTCATGGAGGCTTCCACCTAGATTGCAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCTATGGGGTCATGGAGGCTTCCACCTAGATTGCAAAGGA  50

seq1  AGGCCAGACAGTATGTGGCAGAATCAGAAACCACCTCGGCGGCCTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGACAGTATGTGGCAGAATCAGAAACCACCTCGGCGGCCTCTGAG  100

seq1  AGGGTGCTTGTAAGCTGTGAGAGTGAAGCCTGAGACTCAGTGGAACCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTTGTAAGCTGTGAGAGTGAAGCCTGAGACTCAGTGGAACCTAG  150

seq1  GAAGCTGGAGATACAGGACTATAGACTGTCTGCTGAGGAAAGATGCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGAGATACAGGACTATAGACTGTCTGCTGAGGAAAGATGCAGGC  200

seq1  ACCAAGCAGTTAGCTCAGGAGAGACTTCATGTGGCCATAGGAGAAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCAGTTAGCTCAGGAGAGACTTCATGTGGCCATAGGAGAAGGATC  250

seq1  ATGTAGGACCTTTGGGGTCCACACGTCCCAGATGCAGCACATGAAGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGACCTTTGGGGTCCACACGTCCCAGATGCAGCACATGAAGCTAC  300

seq1  AGGACTTAGTGTCTGTTTGGGTTTGCTTTGGTCCAAGATTCCTATTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTAGTGTCTGTTTGGGTTTGCTTTGGTCCAAGATTCCTATTCATG  350

seq1  TATCCTGTCCTTTTGGAACAGGGAGGTTTATTCTGTGTGTTGGAAGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTCCTTTTGGAACAGGGAGGTTTATTCTGTGTGTTGGAAGTATG  400

seq1  TAATTTGCTTTTTTTTTTTTTTTGCTCTTTTCATATTTTAATGATGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTTTTTTTTTTTTTTTGCTCTTTTCATATTTTAATGATGACAT  450

seq1  GCATTTTAATCATTTAAATTTTATTATTTAGTTAGAGTAATAACCTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAATCATTTAAATTTTATTATTTAGTTAGAGTAATAACCTTAGA  500

seq1  AAAGAGATATGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATATGCATATATATCAAAAGATGGCCTAGTCGGCCATCACTGGA  550

seq1  AAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGGGAA  600

seq1  CACCAGGGCCAAAAAGGGGGAGTGGGTGGGCA  632
      ||||||||||||||||||||||||||||||||
seq2  CACCAGGGCCAAAAAGGGGGAGTGGGTGGGCA  632