BAC Information

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BAC

Clone NameB6Ng01-112A24
Chromosome2 (Build37)14 (Build37)
Map Location 170,772,854 - 170,773,337121,874,406 - 121,874,674
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5
Downstream geneLOC668955, LOC100043743, LOC100043744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112A24.bB6Ng01-112A24.g
ACCDH918232DH918233
length478381
definitionDH918232|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A24, 5' end.DH918233|Mus musculus domesticus DNA, BAC clone: B6Ng01-112A24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(170,772,854 - 170,773,337)(121,874,406 - 121,874,674)
sequence
catggagatctgagccacgggactcatgactaatttgtattagtcagtca
atttcaactgttttactcacttgacctcagccttgaatcactctgatctg
tttgccaagactccacagtaccttgtcgtgtcatcggtgactctcaatcc
accctacagaatgccatgagaggcactcactgttcccttgactgaaacag
gctccacagggaacctggctaactaacctaagttattaaataaatgatga
gacgttggttttttttttttttttaaaaaacttaccatcctcaattaata
tcacaggaatgttgaggttgctatttttatcataattttcattcacattt
ttggcaattttggctctaagtaatagagactcaatgagaattgataatgt
tttagaaaatgtgtgtgtctgtttcttttgagagtatgtgggcacatgaa
gtgtgtgtgtgtgtgtgtgtgtgtgttg
cctctctatgctgcctttaaaaaattgcacaaatcttttatcttttcttt
gcatacgtgtatggagcaagtgtgtatgtttacatatgtatgggtgcatg
tgtctatataggccagaagctgatgtctagtgctgtccctaattgctatt
ccttatctcttgaggcaaggcccccccacagcccctctctctgtctctct
gtctctctctgtctctgtcttctctgtctctctgtctctctctctctctc
tctctctctctctctctctctctctctctctctctctcacacacacgcac
acacactatctctctctcactcacacgaacacccacatacacagactcca
ctcttttgtgggcgcgcacacacacacaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_170772854_170773337
seq2: B6Ng01-112A24.b_50_533

seq1  GAATTCCATGGAGATCTGAGCCACGGGACTCATGACTAATTTGTATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAGATCTGAGCCACGGGACTCATGACTAATTTGTATTAGT  50

seq1  CAGTCAATTTCAACTGTTTTACTCACTTGACCTCAGCCTTGAATCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAATTTCAACTGTTTTACTCACTTGACCTCAGCCTTGAATCACTCT  100

seq1  GATCTGTTTGCCAAGACTCCACAGTACCTTGTCGTGTCATCGGTGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTTGCCAAGACTCCACAGTACCTTGTCGTGTCATCGGTGACTCT  150

seq1  CAATCCACCCTACAGAATGCCATGAGAGGCACTCACTGTTCCCTTGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCACCCTACAGAATGCCATGAGAGGCACTCACTGTTCCCTTGACTG  200

seq1  AAACAGGCTCCACAGGGAACCTGGCTAACTAACCTAAGTTATTAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTCCACAGGGAACCTGGCTAACTAACCTAAGTTATTAAATAAA  250

seq1  TGATGAGACGTTGGTTTTTTTTTTTTTTTTAAAAAACTTACCATCCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGACGTTGGTTTTTTTTTTTTTTTTAAAAAACTTACCATCCTCAA  300

seq1  TTAATATCACAGGAATGTTGAGGTTGCTATTTTTATCATAATTTTCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCACAGGAATGTTGAGGTTGCTATTTTTATCATAATTTTCATTC  350

seq1  ACATTTTTGGCAATTTTGGCTCTAAGTAATAGAGACTCAATGAGAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGGCAATTTTGGCTCTAAGTAATAGAGACTCAATGAGAATTGA  400

seq1  TAATGTTTTAGAAAATGTGTGTGTCTGTTTCTTTTGAGAGTATGTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTAGAAAATGTGTGTGTCTGTTTCTTTTGAGAGTATGTGGGCA  450

seq1  CATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTTG  484
      ||||||||||||||||||||||||||||||||||
seq2  CATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTTG  484

seq1: chr14_121874406_121874674
seq2: B6Ng01-112A24.g_258_454 (reverse)

seq1  AATTGTGTGTGTGTGTGTGTGTATGCATGCAAGAGACAGAAAGACAGAGA  50
      ||||||||||||||| |       ||   ||| |||  |  || | | | 
seq2  AATTGTGTGTGTGTGCG------CGCCCACAAAAGAGTG-GAGTCTGTG-  42

seq1  CCAGAGACACATAGAGTGAGGCACACACACACACACACACACACACACAG  100
         | |     | | |||||                             |
seq2  TATGTGGGTGTTCGTGTGAG----------------------------TG  64

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACAGAG  150
      ||||||||| || | | | | | | | |  ||| ||| ||| ||| ||||
seq2  AGAGAGAGATAGTGTGTGTGCGTGTGTGTGAGAGAGAGAGAGAGAGAGAG  114

seq1  AGACAGAGGAGGAAGAGAGAGAGAGAAGACAGAGAGAAAGACAGACAGAG  200
      ||           |||||||||||| ||| ||||||| ||| ||||||||
seq2  AG-----------AGAGAGAGAGAG-AGAGAGAGAGAGAGAGAGACAGAG  152

seq1  AGACAGAGGCAGAGGAGGAAAGAGAGAGAGAAGACAGACAGACAGAGAGA  250
      ||||                      |||||||||||  |||||||||||
seq2  AGAC----------------------AGAGAAGACAG--AGACAGAGAGA  178

seq1  GAGAGAGAGAGAGAGAGAG  269
      || ||||||| ||||||||
seq2  GACAGAGAGACAGAGAGAG  197