BAC Information

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BAC

Clone NameB6Ng01-112C06
Chromosome14 (Build37)
Map Location 57,163,106 - 57,324,720
singlet/doubletdoublet
Overlap geneCenpj, Parp4, LOC100042788, 4930548G07Rik
Upstream genePck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17
Downstream genePspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C06.bB6Ng01-112C06.g
ACCDH918288DH918289
length1,1081,161
definitionDH918288|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C06, 5' end.DH918289|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,163,106 - 57,164,224)(57,323,549 - 57,324,720)
sequence
gaattcacccttctgtagacttttagaaaagaagaacagaaattatatca
ggacagatggtggagtaggaaactggagaaactaactgtccagccaccta
aacagacaaaaccaacctcagagctctgcggtagagaatggtgaccatct
ctacaggcgctcctagtgacccctgtattccctaggccccctgggaacag
gtatcgggactatgccatccatcctgaggtacccgagggcaggaagagcc
agactgatgcttccacatcctttccagacaggcttgttggaagaatttag
agacaacgcaactcatgagggtcaaaaagattaactgaagcacccggcac
ttgccacaaagaactaaagcaacatgtatacagctgctctctgaggtgag
caaccaatactacaacagcaggagaaaatggagccctggcccaggcagat
gagatggctcagttcgtggcatactgacaactgagattgaaccccaggac
ccacacagtagaaagaaaacaacaactcctgaatgttgtcatttgacccc
cacatgcatgttgtcatttgacctccacatgcatgcccatgtaactaaca
cacacacacattgttttttgagacagggtttctctggaactcactctgta
gaccaggctggccttgaactctgagatccatctgtctctgccttccaagt
gctgggattaaaggcttataccaccacactgagcagtacatgtaaattta
aatattcatataaaatcagaaacctttgtaaaatgtagacatgtagggaa
tggtataataaagccaaataccctcatgtgttaccaggttccacagacaa
ggacttggctctgccccagcagactttagcacacagacgctcccagcact
ctctgctggcagttcagttctcacaggttataacccacagatacataacc
tgaaacctgtactgtagtctgctttggaaaggatttctttctcccatgga
gctaggacctgaataaactgctctgtgggtagaatccatgcctattctca
tatctgaaaccacagaacatgttctgcatctggacagaaaaatatcctca
gggaacaa
gaattcctagaaaggaaacacaagtgagaaatgagatggcattaaccttg
acagccagagcctttttcttcttagtcacttttaggaggaaatgggaaac
agtttgggctgcttgaagcatttgatcttagcagcatgagcctggtctgg
tgtttaaggcttctctgtctagtcctcttccgagaacttgttcaagtttc
tctccagcactaggtcttagacctttcccatagttggactgaatgattct
taccaattgttcagttcttggccctctgctaagggtgacttcttggggca
cagagacctcatattggtgctgactgcacttttgttgaattagtgaacag
tttatttaaggtaacactggtatcattaccataatcaacatgggatgttg
ggggcagggcgcacgtgcatgtgctctcgggccccatctgactaaaatga
agcacagtgaagattaaggatgccatgagttaagggaggagccgtgctgt
ctgcacagagcctgcactgggaaggcactgaagacctcagtgttaggccc
acggaggcagacacatctgagatgggaagtcttattctgctagattcatg
tgcactctttaatatggtttgattgctttaacagaggatggctgaaattg
tcacccaggctggccttgtaactgtaatctgtgccagcctcccaagtagc
taggatcacatcctgtgtctgaggacccagcagcttcttactagggtttt
tgtacccctccccctgcctgctgacagtggcaaacactgtggagttggat
aagaaagtcatgttcatagatccacatttgatcttaggaaattacagctg
agtttattgggagggaccaaccatggcagctacttggctgtattgaaatg
ttcacttgagagcagatatgttgtgcacacaaagtggacttgctggttgg
tcctgtttgctggttgagcaccctacctcagcatggtctgtataacactg
tgtcattcctcactaatcgagaagtcccatgatgtctggatcccatcagt
gctacacttggacacgtaatgcacgtgtacggtgcatgcttttcctcaag
cttggctttcatgtcatctgcaggggcgtctttaactggtggagaaagca
tgaatggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57163106_57164224
seq2: B6Ng01-112C06.b_48_1155

seq1  GAATTCACCCTTCTGTAGACTTTTAGAAAAGAAGAACAGAAATTATATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTCTGTAGACTTTTAGAAAAGAAGAACAGAAATTATATCA  50

seq1  GGACAGATGGTGGAGTAGGAAACTGGAGAAACTAACTGTCCAGCCACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATGGTGGAGTAGGAAACTGGAGAAACTAACTGTCCAGCCACCTA  100

seq1  AACAGACAAAACCAACCTCAGAGCTCTGCGGTAGAGAATGGTGACCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAAAACCAACCTCAGAGCTCTGCGGTAGAGAATGGTGACCATCT  150

seq1  CTACAGGCGCTCCTAGTGACCCCTGTATTCCCTAGGCCCCCTGGGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCGCTCCTAGTGACCCCTGTATTCCCTAGGCCCCCTGGGAACAG  200

seq1  GTATCGGGACTATGCCATCCATCCTGAGGTACCCGAGGGCAGGAAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGGGACTATGCCATCCATCCTGAGGTACCCGAGGGCAGGAAGAGCC  250

seq1  AGACTGATGCTTCCACATCCTTTCCAGACAGGCTTGTTGGAAGAATTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATGCTTCCACATCCTTTCCAGACAGGCTTGTTGGAAGAATTTAG  300

seq1  AGACAACGCAACTCATGAGGGTCAAAAAGATTAACTGAAGCACCCGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACGCAACTCATGAGGGTCAAAAAGATTAACTGAAGCACCCGGCAC  350

seq1  TTGCCACAAAGAACTAAAGCAACATGTATACAGCTGCTCTCTGAGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACAAAGAACTAAAGCAACATGTATACAGCTGCTCTCTGAGGTGAG  400

seq1  CAACCAATACTACAACAGCAGGAGAAAATGGAGCCCTGGCCCAGGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATACTACAACAGCAGGAGAAAATGGAGCCCTGGCCCAGGCAGAT  450

seq1  GAGATGGCTCAGTTCGTGGCATACTGACAACTGAGATTGAACCCCAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGTTCGTGGCATACTGACAACTGAGATTGAACCCCAGGAC  500

seq1  CCACACAGTAGAAAGAAAACAACAACTCCTGAATGTTGTCATTTGACCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGTAGAAAGAAAACAACAACTCCTGAATGTTGTCATTTGACCCC  550

seq1  CACATGCATGTTGTCATTTGACCTCCACATGCATGCCCATGTAACTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATGTTGTCATTTGACCTCCACATGCATGCCCATGTAACTAACA  600

seq1  CACACACACATTGTTTTTTGAGACAGGGTTTCTCTGGAACTCACTCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATTGTTTTTTGAGACAGGGTTTCTCTGGAACTCACTCTGTA  650

seq1  GACCAGGCTGGCCTTGAACTCTGAGATCCATCTGTCTCTGCCTTCCAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTTGAACTCTGAGATCCATCTGTCTCTGCCTTCCAAGT  700

seq1  GCTGGGATTAAAGGCTTATACCACCACACTGAGCAGTACATGTAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCTTATACCACCACACTGAGCAGTACATGTAAATTTA  750

seq1  AATATTCATATAAAATCAGAAACC-TTGTAAAATGTAGACATGTAGGGAA  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATATTCATATAAAATCAGAAACCTTTGTAAAATGTAGACATGTAGGGAA  800

seq1  TGGTATAATAAAGCCAAAATACCCTCATGTGTTACCAGGTTCCACAGACA  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGTATAATAAAGCC-AAATACCCTCATGTGTTACCAGGTTCCACAGACA  849

seq1  AGGACTTGGCTCTGCCCCAGCAGACTTTAGCACACAGACGCTCCCAGCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTGGCTCTGCCCCAGCAGACTTTAGCACACAGACGCTCCCAGCAC  899

seq1  TCTCTGCTGGCAAGTTCCAGTTCTCACAGGTTTATAACCCACAAGATACA  949
      ||||||||||| |||| ||||||||||||| ||||||||||| |||||||
seq2  TCTCTGCTGGC-AGTT-CAGTTCTCACAGG-TTATAACCCAC-AGATACA  945

seq1  TAACCTGAAACCTGTACTGTAGTCTTGCTTTGGGAAAGGATTTCATATCT  999
      |||||||||||||||||||||||| |||||| |||||||||||| | |||
seq2  TAACCTGAAACCTGTACTGTAGTC-TGCTTT-GGAAAGGATTTC-TTTCT  992

seq1  CCCAGGGAGCTAGGACCTGAAATTAAACTGCTCTGTGGGTCAGAAATCCA  1049
      |||| ||||||||||||||||  ||||||||||||||||| || ||||||
seq2  CCCATGGAGCTAGGACCTGAA--TAAACTGCTCTGTGGGT-AG-AATCCA  1038

seq1  TGCCTATTCTCATATCTGAAACCCACAGACACTGTTCTGCACCGGCACAG  1099
      ||||||||||||||||||||| |||||||   ||||||||| | | ||||
seq2  TGCCTATTCTCATATCTGAAA-CCACAGAACATGTTCTGCATCTGGACAG  1087

seq1  -AAAATAGCCTCAGGGAACAA  1119
       |||||| |||||||||||||
seq2  AAAAATATCCTCAGGGAACAA  1108

seq1: chr14_57323549_57324720
seq2: B6Ng01-112C06.g_67_1227 (reverse)

seq1  AATTCCATTCATGCTTTTCTCACCAGGTATTAAAGTAGCGCCTCTGCAGA  50
      |||||||||||||||||   ||||||   ||||||   |||| |||||||
seq2  AATTCCATTCATGCTTTCTCCACCAG---TTAAAG--ACGCCCCTGCAGA  45

seq1  TGACATGGAAGCCAAGCTTGAGGAAAAGCATTGCACCTGTCACGTGCATT  100
      ||||||| |||||||||||||||||||||| ||||||   ||||||||||
seq2  TGACATGAAAGCCAAGCTTGAGGAAAAGCA-TGCACCGTACACGTGCATT  94

seq1  ACCGTGTCCAAGTGTAGCACTGATGGGATCCAGACATCATGGGGACTCTC  150
      | |||||||||||||||||||||||||||||||||||||| ||||||   
seq2  A-CGTGTCCAAGTGTAGCACTGATGGGATCCAGACATCAT-GGGACTTCT  142

seq1  CGATTAGTGAGGAATGACACAGGTGTTATACAGACCATGCTGAGGTAGGG  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGATTAGTGAGGAATGACACA-GTGTTATACAGACCATGCTGAGGTAGGG  191

seq1  TGCTCAACCAGCAAACAGGACCAACCAGCAAGTCCACCTTGGTGTGCACA  250
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  TGCTCAACCAGCAAACAGGACCAACCAGCAAGTCCA-CTTTGTGTGCACA  240

seq1  ACATATCTGCTCTCAAGTGAACATTTTCAATACAGCCAAGTAGCTGCCAT  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATATCTGCTCTCAAGTGAACA-TTTCAATACAGCCAAGTAGCTGCCAT  289

seq1  GGTTGGTCCCTCCCAATAAACTCAGCTGTAATTTCCTAAGATCAAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTCCCTCCCAATAAACTCAGCTGTAATTTCCTAAGATCAAATGTG  339

seq1  GATCTATGAACATGACTTTCTTATCCAACTCCACAGTGTTTGCCACTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATGAACATGACTTTCTTATCCAACTCCACAGTGTTTGCCACTGTC  389

seq1  AGCAGGCAGGGGGAGGGGTACAAAAACCCTAGTAAGAAGCTGCTGGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCAGGGGGAGGGGTACAAAAACCCTAGTAAGAAGCTGCTGGGTCC  439

seq1  TCAGACACAGGATGTGATCCTAGCTACTTGGGAGGCTGGCACAGATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACAGGATGTGATCCTAGCTACTTGGGAGGCTGGCACAGATTACA  489

seq1  GTTACAAGGCCAGCCTGGGTGACAATTTCAGCCATCCTCTGTTAAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGGCCAGCCTGGGTGACAATTTCAGCCATCCTCTGTTAAAGCAA  539

seq1  TCAAACCATATTAAAGAGTGCACATGAATCTAGCAGAATAAGACTTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCATATTAAAGAGTGCACATGAATCTAGCAGAATAAGACTTCCCA  589

seq1  TCTCAGATGTGTCTGCCTCCGTGGGCCTAACACTGAGGTCTTCAGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATGTGTCTGCCTCCGTGGGCCTAACACTGAGGTCTTCAGTGCCT  639

seq1  TCCCAGTGCAGGCTCTGTGCAGACAGCACGGCTCCTCCCTTAACTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGCAGGCTCTGTGCAGACAGCACGGCTCCTCCCTTAACTCATGG  689

seq1  CATCCTTAATCTTCACTGTGCTTCATTTTAGTCAGATGGGGCCCGAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTAATCTTCACTGTGCTTCATTTTAGTCAGATGGGGCCCGAGAGC  739

seq1  ACATGCACGTGCGCCCTGCCCCCAACATCCCATGTTGATTATGGTAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACGTGCGCCCTGCCCCCAACATCCCATGTTGATTATGGTAATGA  789

seq1  TACCAGTGTTACCTTAAATAAACTGTTCACTAATTCAACAAAAGTGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTGTTACCTTAAATAAACTGTTCACTAATTCAACAAAAGTGCAGT  839

seq1  CAGCACCAATATGAGGTCTCTGTGCCCCAAGAAGTCACCCTTAGCAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAATATGAGGTCTCTGTGCCCCAAGAAGTCACCCTTAGCAGAGG  889

seq1  GCCAAGAACTGAACAATTGGTAAGAATCATTCAGTCCAACTATGGGAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAACTGAACAATTGGTAAGAATCATTCAGTCCAACTATGGGAAAG  939

seq1  GTCTAAGACCTAGTGCTGGAGAGAAACTTGAACAAGTTCTCGGAAGAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGACCTAGTGCTGGAGAGAAACTTGAACAAGTTCTCGGAAGAGGA  989

seq1  CTAGACAGAGAAGCCTTAAACACCAGACCAGGCTCATGCTGCTAAGATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGAGAAGCCTTAAACACCAGACCAGGCTCATGCTGCTAAGATCA  1039

seq1  AATGCTTCAAGCAGCCCAAACTGTTTCCCATTTCCTCCTAAAAGTGACTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCAAGCAGCCCAAACTGTTTCCCATTTCCTCCTAAAAGTGACTA  1089

seq1  AGAAGAAAAAGGCTCTGGCTGTCAAGGTTAATGCCATCTCATTTCTCACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAGGCTCTGGCTGTCAAGGTTAATGCCATCTCATTTCTCACT  1139

seq1  TGTGTTTCCTTTCTAGGAATTC  1172
      ||||||||||||||||||||||
seq2  TGTGTTTCCTTTCTAGGAATTC  1161