BAC Information

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BAC

Clone NameB6Ng01-112G04
Chromosome10 (Build37)14 (Build37)
Map Location 104,053,903 - 104,054,36344,472,160 - 44,473,309
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112G04.bB6Ng01-112G04.g
ACCDH918465DH918466
length9471,151
definitionDH918465|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G04, 5' end.DH918466|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(44,472,160 - 44,473,309)
sequence
gaattctcacctgaggaatatcgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaggt
tccacctcacaccagtcagaatggctaagattaaaaattcaggtgacagc
agatgctggcatggatgtggtgaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaatttgacatagtgctaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gggactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagataaagatacagtttgctaaacacatgaaactcaaga
agaatgaagactgaagtgtggacactatgcccctccttaaaagtggaaac
aaaacacccatggaaggagttacaaagtttggaactgagatgaaaggatg
gaccatgtagagactgccatatccagggatccaccccataatcagcttcc
aaacgctgacaccatgcatacactagcaagattttatcgaaaggacccag
atgtagctgtctcttgtgagactatgccggagcctagcaaacacagaagt
ggatgctcacagtcagcccatgggatggatcacagggctccaatgga
gaattcagaacaagtcacagctgagtggagacctaaaagaagagtgagtg
ttgaataaataaaatggagagaaagagctctccaaggaaacacagtagtg
ctgcatctttcagtgacccatccatgagagcaggaacagctgcccagccc
tgggagtcccagaggaccacctgccatgagcagatcactggagaagtcag
agaagagaggagcaaggagaccagatcaagaagcagcttgggtttactct
ggaggattaaagccttttaattacatggtcagatcactcagtcagtaagg
caagagatggattaagggtgggttaacctgagagcagggagagtatatga
gatacaattgtagtaacaaacctgggaggaattataaccctgtgaaatac
aaactgggcagaatagcagcagaaagccaaaactggaagagaagcagact
ccagatcctgccagactggttcaggacagcagcagcagatgaagaatcta
gcagaatagagtttgactcttatgcagcaactctgttttacttactactc
tcaacaacactgagatggatgtgaggtcatgtgtgctgtacagatgagca
gattcagaaaagttaaataatgtgtcagaggtcatgatagaaagtaatct
atttgatattaaacctaggtcatctaaacagaatggactggatatttatt
ttcacacgtcaatataaggtattaaaatatcctgtgtaaaatatgagaca
tacacatcttaagatgtcaaggccagatgtgatggtgcatgctgtaatcc
cagaattttgtgagtttggactcaaggctgatctacatcaagaattccag
gaaagaaatcaaatctttacttagaagtataagattatcctgttttccaa
gttctgagtctgtagatagaagttcatacacatccaaacataattcacat
ttgaatcacagggcaaagaaaacgtgggaagagtaaaatggcttgtagta
ctccctattgttcttaagtaatgctcacagcctaaggaaggggagaagcc
tttggaagcagtaatctgctgactcatctgccagagaaacaaagagcacc
tgctgcatgctgaaaaaacagttctagaagcacacctgcttggcttgcag
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-112G04.b_46_516 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCTG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||| |||||||| |||||||||| |||| ||||||| ||||||||||||
seq2  GTAGCACTATGTCAAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
       ||||||||  |||||||||||||||||||||||||||| ||||||||||
seq2  ACCACATCCATGCCAGCATCTGCTGTCACCTGAATTTTTAATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAACCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
       ||||||||||||||||||||
seq2  ATATTCCTCAGGTGAGAATTC  471

seq1: chr14_44472160_44473309
seq2: B6Ng01-112G04.g_67_1217

seq1  GAATTCAGAACAAGTCACAGCTGAGTGGAGACCTAAAAGAAGAGTGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACAAGTCACAGCTGAGTGGAGACCTAAAAGAAGAGTGAGTG  50

seq1  TTGAATAAATAAAATGGAGAGAAAGAGCTCTCCAAGGAAACACAGTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAATAAAATGGAGAGAAAGAGCTCTCCAAGGAAACACAGTAGTG  100

seq1  CTGCATCTTTCAGTGACCCATCCATGAGAGCAGGAACAGCTGCCCAGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTTTCAGTGACCCATCCATGAGAGCAGGAACAGCTGCCCAGCCC  150

seq1  TGGGAGTCCCAGAGGACCACCTGCCATGAGCAGATCACTGGAGAAGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCCCAGAGGACCACCTGCCATGAGCAGATCACTGGAGAAGTCAG  200

seq1  AGAAGAGAGGAGCAAGGAGACCAGATCAAGAAGCAGCTTGGGTTTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGGAGCAAGGAGACCAGATCAAGAAGCAGCTTGGGTTTACTCT  250

seq1  GGAGGATTAAAGCCTTTTAATTACATGGTCAGATCACTCAGTCAGTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTAAAGCCTTTTAATTACATGGTCAGATCACTCAGTCAGTAAGG  300

seq1  CAAGAGATGGATTAAGGGTGGGTTAACCTGAGAGCAGGGAGAGTATATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATGGATTAAGGGTGGGTTAACCTGAGAGCAGGGAGAGTATATGA  350

seq1  GATACAATTGTAGTAACAAACCTGGGAGGAATTATAACCCTGTGAAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAATTGTAGTAACAAACCTGGGAGGAATTATAACCCTGTGAAATAC  400

seq1  AAACTGGGCAGAATAGCAGCAGAAAGCCAAAACTGGAAGAGAAGCAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGCAGAATAGCAGCAGAAAGCCAAAACTGGAAGAGAAGCAGACT  450

seq1  CCAGATCCTGCCAGACTGGTTCAGGACAGCAGCAGCAGATGAAGAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCCTGCCAGACTGGTTCAGGACAGCAGCAGCAGATGAAGAATCTA  500

seq1  GCAGAATAGAGTTTGACTCTTATGCAGCAACTCTGTTTTACTTACTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATAGAGTTTGACTCTTATGCAGCAACTCTGTTTTACTTACTACTC  550

seq1  TCAACAACACTGAGATGGATGTGAGGTCATGTGTGCTGTACAGATGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAACACTGAGATGGATGTGAGGTCATGTGTGCTGTACAGATGAGCA  600

seq1  GATTCAGAAAAGTTAAATAATGTGTCAGAGGTCATGATAGAAAGTAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGAAAAGTTAAATAATGTGTCAGAGGTCATGATAGAAAGTAATCT  650

seq1  ATTTGATATTAAACCTAGGTCATCTAAACAGAATGGACTGGATATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATTAAACCTAGGTCATCTAAACAGAATGGACTGGATATTTATT  700

seq1  TTCACACGTCAATATAAGGTATTAAAATATCCTGTGTAAAATATGAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACGTCAATATAAGGTATTAAAATATCCTGTGTAAAATATGAGACA  750

seq1  TACACATCTTAAGATGTCAAGGCCAGATGTGATGGTGCATGCTGTAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATCTTAAGATGTCAAGGCCAGATGTGATGGTGCATGCTGTAATCC  800

seq1  CAGAATTTTGTGAGTTTGGACTCAAGGCTGATCTACATCAAGAATTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTTGTGAGTTTGGACTCAAGGCTGATCTACATCAAGAATTCCAG  850

seq1  GAAAGAAATCAAATC-TTACTTAGAAGTATAAGATTATCCTGTTTTCCAA  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATCAAATCTTTACTTAGAAGTATAAGATTATCCTGTTTTCCAA  900

seq1  GTTCTGAGTCTGTAGATAGAAGTTCATACACATCCAAACAT-ATTCACAT  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTCTGAGTCTGTAGATAGAAGTTCATACACATCCAAACATAATTCACAT  950

seq1  TTGAATCACAGGGCAAAGAAAACGTGGG-AGAGTAAAATGGCTTGTAGTA  997
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGAATCACAGGGCAAAGAAAACGTGGGAAGAGTAAAATGGCTTGTAGTA  1000

seq1  CTCCCTA-TGTTCTTAAGTAATGCTCACAGCCT-AGGGAGGGGAGAAGCC  1045
      ||||||| ||||||||||||||||||||||||| ||| ||||||||||||
seq2  CTCCCTATTGTTCTTAAGTAATGCTCACAGCCTAAGGAAGGGGAGAAGCC  1050

seq1  TTTGGAAGCAGTAATCCTGCTGACTCATCTGCACAGAGAACACAGGAGCA  1095
      ||||||||||||||| |||||||||||||||| |||||||   | |||||
seq2  TTTGGAAGCAGTAAT-CTGCTGACTCATCTGC-CAGAGAAACAAAGAGCA  1098

seq1  CCTGCTGCATGCTGAGAAACAGGTTCCTAGGAAGCACACTGCCTGGGCTT  1145
      ||||||||||||||| |||   ||| ||| |||||||||   || |||||
seq2  CCTGCTGCATGCTGAAAAAACAGTT-CTA-GAAGCACACCTGCTTGGCTT  1146

seq1  GCAGC  1150
      |||||
seq2  GCAGC  1151