BAC Information

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BAC

Clone NameB6Ng01-114C13
Chromosome14 (Build37)
Map Location 109,588,602 - 109,731,594
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114C13.bB6Ng01-114C13.g
ACCDH919755DH919756
length1,1641,122
definitionDH919755|Mus musculus domesticus DNA, BAC clone: B6Ng01-114C13, 5' end.DH919756|Mus musculus domesticus DNA, BAC clone: B6Ng01-114C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,588,602 - 109,589,762)(109,730,451 - 109,731,594)
sequence
gaattcattgtttttcatagatgagtagtactccattgtgtaatgtaaca
cattcacaactgaattgtcaagatattagagagatgaacttctccacgtc
tcctttacactttcattcatttatccttcttttgagactaataggacaga
atgagacactgttttacatacacaatcctttcaagaggagagcttactaa
atatttactctgggagcctcaaaaccatcattgattcttccatattgctc
ctcataattttcataaactttctgcttctgggtggtggtagatatgatgc
agacatagttctaattatttgaaatctattatctttcttataaaaatgaa
ctcagtattctttgggaaatgttggtgcctgtatgataataaaggatcag
gaatagtgatgtgggtagaaagccaagtcatactcagaatatcagagtaa
ttatttattctactgtagacaaactgactgaatctctgaggtttaatacc
atccaccaggaaacctaggttgatctttgttggtgcaagcagcacttccg
tgtgatgctagaccccattacagcagtctgttccaaaagaacctaaagtt
tgagagcaatgtaccaggaaatcctttctatttatctctagccccacggg
tgttatgaccaacacacatcttggaattaaaacagagtgcaaaaataaat
ttgtaaaattaaattctcagtgagagtcaaatagcatacttttcattttg
atattaattataaattttaatataattagattttccaatgagaccctgaa
ctttcgaatatattaaattaaatttttttgtacatgtttttaaattttat
tttaagtagatatgaaaaggctattctaggaaaatatgcatatatatata
tatatatatatatatatatatatactttaaatattttcaatgaattttat
ttaaataaatattccacgaattttatttttcacttagctaatatataatt
ttaagtacttaattctcagtttagattccttaattcagcaacaatgcctt
attttaaattttatcatttgaagaatattttcctcactgtgggcagaata
ttttcaatgattgtatatttaccaaatggatcgattcttgatcaaagaaa
gttgaatttcaagc
gaattcttttgtttatgaaatttcgcaaacagtgattattatagaactaa
caattttcaagaactaacaattgctggaaagaataatttttttatggaag
gaatgttttgatcatcctttatatagtatagtctatgatttttagtatat
attacttggaaaatatgaataaaattagccctataaattttggattgcca
tttttggaacaaaggataaattgggtagaggaagaggactacactcttgg
tgtaatttggttttatggatattggcttagaaatatactgtataattgtt
ttcctgcattcaattttatgttgggactttgggaaatgtgccgtgcattg
tttgcaattattgtttatacctagactacaacaaaaatgttttagaaagt
ggaaataatatgaaaaagtcagtaaagtgaattgggaaagttcaaattac
tagatctcaataaacttgatatatcaagaatcttcctaaatgatatataa
acattatttacagtttccacatatttaattggttactttatagtttgagt
ttttaaaaactaataagggcatcatgagccctaagaactggaattgtact
aaagatcacaacttagtattttccttgatgcaacttttgttgttggttgt
cactgttaaaataatttcataatttaacatatctaattagacagtgtttc
cactgtgttaaaacgtttttgctgttatacttagaatctttctaaaacaa
tgtttattacgtgaacatgatgttttctacaaagcataagtaatgtatac
ttattacataatccattcaaaatgctcatttcaaactcttcctttgagtc
cctaaacctgcaacctttaattctcattcacatatatcacatatatatta
catacatcacatatgagtttgaatgtatggcaaagaactgatgttaaggt
cagggcttctacttcttttggaggaggatttatgtggttaacctatgggg
atcttttgttctacttcaatttcacacaagaaccctggatcccagtcatc
tatcgttctggttgcatgaagtctggaggtcagctaacactgaacatttc
ccagcaggatgatcagttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109588602_109589762
seq2: B6Ng01-114C13.b_46_1209

seq1  GAATTCATTGTTTTTCATAGATGAGTAGTACTCCATTGTGTAATGTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTCATAGATGAGTAGTACTCCATTGTGTAATGTAACA  50

seq1  CATTCACAACTGAATTGTCAAGATATTAGAGAGATGAACTTCTCCACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAACTGAATTGTCAAGATATTAGAGAGATGAACTTCTCCACGTC  100

seq1  TCCTTTACACTTTCATTCATTTATCCTTCTTTTGAGACTAATAGGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACACTTTCATTCATTTATCCTTCTTTTGAGACTAATAGGACAGA  150

seq1  ATGAGACACTGTTTTACATACACAATCCTTTCAAGAGGAGAGCTTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACACTGTTTTACATACACAATCCTTTCAAGAGGAGAGCTTACTAA  200

seq1  ATATTTACTCTGGGAGCCTCAAAACCATCATTGATTCTTCCATATTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTCTGGGAGCCTCAAAACCATCATTGATTCTTCCATATTGCTC  250

seq1  CTCATAATTTTCATAAACTTTCTGCTTCTGGGTGGTGGTAGATATGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATTTTCATAAACTTTCTGCTTCTGGGTGGTGGTAGATATGATGC  300

seq1  AGACATAGTTCTAATTATTTGAAATCTATTATCTTTCTTATAAAAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGTTCTAATTATTTGAAATCTATTATCTTTCTTATAAAAATGAA  350

seq1  CTCAGTATTCTTTGGGAAATGTTGGTGCCTGTATGATAATAAAGGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATTCTTTGGGAAATGTTGGTGCCTGTATGATAATAAAGGATCAG  400

seq1  GAATAGTGATGTGGGTAGAAAGCCAAGTCATACTCAGAATATCAGAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTGATGTGGGTAGAAAGCCAAGTCATACTCAGAATATCAGAGTAA  450

seq1  TTATTTATTCTACTGTAGACAAACTGACTGAATCTCTGAGGTTTAATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTCTACTGTAGACAAACTGACTGAATCTCTGAGGTTTAATACC  500

seq1  ATCCACCAGGAAACCTAGGTTGATCTTTGTTGGTGCAAGCAGCACTTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCAGGAAACCTAGGTTGATCTTTGTTGGTGCAAGCAGCACTTCCG  550

seq1  TGTGATGCTAGACCCCATTACAGCAGTCTGTTCCAAAAGAACCTAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGCTAGACCCCATTACAGCAGTCTGTTCCAAAAGAACCTAAAGTT  600

seq1  TGAGAGCAATGTACCAGGAAATCCTTTCTATTTATCTCTAGCCCCACGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAATGTACCAGGAAATCCTTTCTATTTATCTCTAGCCCCACGGG  650

seq1  TGTTATGACCAACACACATCTTGGAATTAAAACAGAGTGCAAAAATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGACCAACACACATCTTGGAATTAAAACAGAGTGCAAAAATAAAT  700

seq1  TTGTAAAATTAAATTCTCAGTGAGAGTCAAATAGCATACTTTTCATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAATTAAATTCTCAGTGAGAGTCAAATAGCATACTTTTCATTTTG  750

seq1  ATATTAATTATAAATTTTAATATAATTAGATTTTCCAATGAGACCCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATTATAAATTTTAATATAATTAGATTTTCCAATGAGACCCTGAA  800

seq1  CTTTCGAATATATTAAATTAAATTTTTTTGTACATGTTTTTAAATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGAATATATTAAATTAAATTTTTTTGTACATGTTTTTAAATTTTAT  850

seq1  TTTAAGTAGATATG-AAAGGCTATTCTAGGAAAATATGCATATATATATA  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAGATATGAAAAGGCTATTCTAGGAAAATATGCATATATATATA  900

seq1  TATATATATATATATATATATATACTTTAAATATTTTCAATGAATTTTTA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATATATATATATATATATATATACTTTAAATATTTTCAATGAA-TTTTA  949

seq1  TTTAAATAAATATTCCACGAATTTTATTTTTCACTTAGCTAATATATAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAATATTCCACGAATTTTATTTTTCACTTAGCTAATATATAAT  999

seq1  TTTAAGTACTTAA-TCTCAGTTTAGATTCCTATATTCAGCAACATATGCC  1048
      ||||||||||||| |||||||||||||||||  ||||||||||| |||||
seq2  TTTAAGTACTTAATTCTCAGTTTAGATTCCTTAATTCAGCAACA-ATGCC  1048

seq1  -TATTTTAAATTTTATCATTTGAAAGAATATTTTCCTCACTGT-GGCAG-  1095
       ||||||||||||||||||||| |||||||||||||||||||| ||||| 
seq2  TTATTTTAAATTTTATCATTTG-AAGAATATTTTCCTCACTGTGGGCAGA  1097

seq1  ATA-TTTCTATGATCTGTATA-TTACCAAATGGATCGATTCTTGTATCAA  1143
      ||| |||| ||||| |||||| |||||||||||||||||||||| |||||
seq2  ATATTTTCAATGAT-TGTATATTTACCAAATGGATCGATTCTTG-ATCAA  1145

seq1  AGAGAG-TGAATTTCAAGC  1161
      ||| || ||||||||||||
seq2  AGAAAGTTGAATTTCAAGC  1164

seq1: chr14_109730451_109731594
seq2: B6Ng01-114C13.g_68_1189 (reverse)

seq1  AAAGAACTGATCATCACTGCTGGGGAATTGTTCAGTGGGTAAGGCTAGAA  50
      ||||||||||||||| ||||| ||||| ||||||||  || | |||   |
seq2  AAAGAACTGATCATC-CTGCT-GGGAAATGTTCAGT--GTTA-GCT--GA  43

seq1  CCTCCAGACTTCATGCAAACCCAGAAACGATAGCACTGAACTGAGATCCA  100
      ||||||||||||||||||  |||| ||||||||   || |||| ||||| 
seq2  CCTCCAGACTTCATGCAA--CCAG-AACGATAG--ATG-ACTGGGATCC-  86

seq1  AGTGTTCTTGTGTTGAAATTGGAAGTAGAAACAAAAGATTCCCCATAGGG  150
      || ||||||||| ||||||| ||||||| ||||||||| |||||||||| 
seq2  AGGGTTCTTGTG-TGAAATT-GAAGTAG-AACAAAAGA-TCCCCATAGG-  131

seq1  TTTAACCACATAAATCCTTCCTCCAAAAGAAGTAGAGGCCCTTGACCTTA  200
       |||||||||||||||| |||||||||||||||||| |||| ||||||||
seq2  -TTAACCACATAAATCC-TCCTCCAAAAGAAGTAGAAGCCC-TGACCTTA  178

seq1  ACATCAGTTCTTTGCCATACATTCAAACTCATATGTGATGTATGTAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTTCTTTGCCATACATTCAAACTCATATGTGATGTATGTAATAT  228

seq1  ATATGTGATATATGTGAATGAGAATTAAAGGTTGCAGGTTTAGGGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGATATATGTGAATGAGAATTAAAGGTTGCAGGTTTAGGGACTCA  278

seq1  AAGGAAGAGTTTGAAATGAGCATTTTGAATGGATTATGTAATAAGTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAGTTTGAAATGAGCATTTTGAATGGATTATGTAATAAGTATAC  328

seq1  ATTACTTATGCTTTGTAGAAAACATCATGTTCACGTAATAAACATTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTATGCTTTGTAGAAAACATCATGTTCACGTAATAAACATTGTTT  378

seq1  TAGAAAGATTCTAAGTATAACAGCAAAAACGTTTTAACACAGTGGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGATTCTAAGTATAACAGCAAAAACGTTTTAACACAGTGGAAACA  428

seq1  CTGTCTAATTAGATATGTTAAATTATGAAATTATTTTAACAGTGACAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAATTAGATATGTTAAATTATGAAATTATTTTAACAGTGACAACC  478

seq1  AACAACAAAAGTTGCATCAAGGAAAATACTAAGTTGTGATCTTTAGTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAGTTGCATCAAGGAAAATACTAAGTTGTGATCTTTAGTACA  528

seq1  ATTCCAGTTCTTAGGGCTCATGATGCCCTTATTAGTTTTTAAAAACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTTCTTAGGGCTCATGATGCCCTTATTAGTTTTTAAAAACTCAA  578

seq1  ACTATAAAGTAACCAATTAAATATGTGGAAACTGTAAATAATGTTTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAAGTAACCAATTAAATATGTGGAAACTGTAAATAATGTTTATAT  628

seq1  ATCATTTAGGAAGATTCTTGATATATCAAGTTTATTGAGATCTAGTAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTAGGAAGATTCTTGATATATCAAGTTTATTGAGATCTAGTAATT  678

seq1  TGAACTTTCCCAATTCACTTTACTGACTTTTTCATATTATTTCCACTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCCCAATTCACTTTACTGACTTTTTCATATTATTTCCACTTTC  728

seq1  TAAAACATTTTTGTTGTAGTCTAGGTATAAACAATAATTGCAAACAATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTTTGTTGTAGTCTAGGTATAAACAATAATTGCAAACAATGC  778

seq1  ACGGCACATTTCCCAAAGTCCCAACATAAAATTGAATGCAGGAAAACAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCACATTTCCCAAAGTCCCAACATAAAATTGAATGCAGGAAAACAAT  828

seq1  TATACAGTATATTTCTAAGCCAATATCCATAAAACCAAATTACACCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTATATTTCTAAGCCAATATCCATAAAACCAAATTACACCAAGA  878

seq1  GTGTAGTCCTCTTCCTCTACCCAATTTATCCTTTGTTCCAAAAATGGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTCCTCTTCCTCTACCCAATTTATCCTTTGTTCCAAAAATGGCAA  928

seq1  TCCAAAATTTATAGGGCTAATTTTATTCATATTTTCCAAGTAATATATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATTTATAGGGCTAATTTTATTCATATTTTCCAAGTAATATATAC  978

seq1  TAAAAATCATAGACTATACTATATAAAGGATGATCAAAACATTCCTTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCATAGACTATACTATATAAAGGATGATCAAAACATTCCTTCCA  1028

seq1  TAAAAAAATTATTCTTTCCAGCAATTGTTAGTTCTTGAAAATTGTTAGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATTATTCTTTCCAGCAATTGTTAGTTCTTGAAAATTGTTAGTT  1078

seq1  CTATAATAATCACTGTTTGCGAAATTTCATAAACAAAAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATAATCACTGTTTGCGAAATTTCATAAACAAAAGAATTC  1122