BAC Information

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BAC

Clone NameB6Ng01-114J07
Chromosome14 (Build37)
Map Location 92,905,870 - 93,022,945
singlet/doubletdoublet
Overlap geneLOC638252
Upstream geneEG665377
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114J07.bB6Ng01-114J07.g
ACCDH920067DH920068
length9711,002
definitionDH920067|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J07, 5' end.DH920068|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,905,870 - 92,906,859)(93,022,411 - 93,022,945)
sequence
gaattctgtctgtagtaaaatatactgtgagattttcttctaaaactcca
catttttttattaaaattaagaacctgaaactaaacagtaagtagctctg
atgaccagatcttattgttatctattcttaatgttgaccaccccatattc
ttttatatgggaaaaaaaagaacttttaaaagataaactgtactataaca
cagagatgtttcatttaatagatatctaagtgtttccattttctactatt
tctgacaaccaatgtgcaaagattataaaaattgaagtgattttaggcct
gctatccattctaaaatctgtttaatgatacatttctactgggggaaaaa
aagaccactaatgttttcgaatgatatttgattgcttttatttttttaaa
aaaatgacatagttattagaaaagcatgcgaaagtaaatggccaaaaagg
tattataatacatcaaatgtatctgtattatcacagttctgggagggatg
taaaaatgcaatttaatatttataccggtaggagagagctacttaggaag
cctggaaattatccagcctgtgtgagtcatggacaggacagccctgtatc
tgaggtaagatctctacctggaggcttactcctgaatgtagagtgagttc
ttttcattctctataacaggtgatgattttataacctcccagtgtcatac
ttttggtgctataaattcagtgaatcattgcaaaatcctctaggaaagct
acatgtacatcatatataaacagtcttgctaaattgtgcagttactcgtt
gagatgcagtcaaaataaatgttattgtgcagacaccagaacttttgttt
ggcatcactaactgatatgctttctattactttgaagagctagtgaagac
tacaaagctaagatgatagagtgctcagtcggtgtaagatctccagactc
ttttatacagaaaaatatgaa
gaattctgaagaaaacagcaagaaacatgttcagatgtagttcttttaca
tcattgagacaagataccggttagaaatttcttaagagacacaagatgta
tttgggcctaaagtttcaaaaggtttcatttcatcattagaagggaaagc
ataacagaaaaattaagactctgatgttggaaatatgtggcagagagtgt
ttacattataatggcccagaaacagataaaatttcaggaacctgaaatat
aacccttaaactgctactaccagtggatctattttaaccaggcagagccc
aattcccaaagattcagactatccaaagtagtggcattatctgagttagc
aaacaagccctcaaaatgtccacacctgaaggacatttcaactcaaatta
caatagatatatcagacgatataaccagaatctccaatggcaagataagc
agtgtcacttgtagcctcccccagccttgaagcaggctgattcagtcttt
gctgccactgaaaatgagatcacctggggtgtagcctttgacttagatag
ctgtattgttatgtcaaatatcgctgcccttcttggagactctgctacct
gctgagagacccttgagacatcccagagacacatcctatcctgcaggtag
cctacaggctggctccaggcaccaagactggactggcaggagctgggtgg
ggtggattgtccttccccctcataagcaaggtctcttagttaactagcag
gccttgatcagagaaaaaattgtcttggcttcattatttttctcgccttc
tagtctctctctctctttcagctttcagccccagcctgccttccagaaat
acccagttcatgtaggccacaggctggcctcctactacagtcactctttg
tgccatttcagttgtccatgactatgtctggaaatccctctcattcagga
atgactgatattatattaatttgtatgctgtaaataagaaaagatatgat
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_92905870_92906859
seq2: B6Ng01-114J07.b_48_1018

seq1  GAATTCTGTCTGTAGTAAAATATACTGTGAGATTTTCTTCTAAAACTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTGTAGTAAAATATACTGTGAGATTTTCTTCTAAAACTCCA  50

seq1  CATTTTTTTATTAAAATTAAGAACCTGAAACTAAACAGTAAGTAGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTATTAAAATTAAGAACCTGAAACTAAACAGTAAGTAGCTCTG  100

seq1  ATGACCAGATCTTATTGTTATCTATTCTTAATGTTGACCACCCCATATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGATCTTATTGTTATCTATTCTTAATGTTGACCACCCCATATTC  150

seq1  TTTTATATGGGAAAAAAAAGAACTTTTAAAAGATAAACTGTACTATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATGGGAAAAAAAAGAACTTTTAAAAGATAAACTGTACTATAACA  200

seq1  CAGAGATGTTTCATTTAATAGATATCTAAGTGTTTCCATTTTCTACTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGTTTCATTTAATAGATATCTAAGTGTTTCCATTTTCTACTATT  250

seq1  TCTGACAACCAATGTGCAAAGATTATAAAAATTGAAGTGATTTTAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAACCAATGTGCAAAGATTATAAAAATTGAAGTGATTTTAGGCCT  300

seq1  GCTATCCATTCTAAAATCTGTTTAATGATACATTTCTACTGGGGGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCATTCTAAAATCTGTTTAATGATACATTTCTACTGGGGGAAAAA  350

seq1  AAGACCACTAATGTTTTCGAATGATATTTGATTGCTTTTATTTTTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACTAATGTTTTCGAATGATATTTGATTGCTTTTATTTTTTTAAA  400

seq1  AAAATGACATAGTTATTAGAAAAGCATGCGAAAGTAAATGGCCAAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACATAGTTATTAGAAAAGCATGCGAAAGTAAATGGCCAAAAAGG  450

seq1  TATTATAATACATCAAATGTATCTGTATTATCACAGTTCTGGGAGGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATACATCAAATGTATCTGTATTATCACAGTTCTGGGAGGGATG  500

seq1  TAAAAATGCAATTTAATATTTATACCGGTAGGAGAGAGCTACTTAGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGCAATTTAATATTTATACCGGTAGGAGAGAGCTACTTAGGAAG  550

seq1  CCTGGAAATTATCCAGCCTGTGTGAGTCATGGACAGGACAGCCCTGTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATTATCCAGCCTGTGTGAGTCATGGACAGGACAGCCCTGTATC  600

seq1  TGAGGTAAGATCTCTACCTGGAGGCTTACTCCTGAATGTAGAGTGAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAAGATCTCTACCTGGAGGCTTACTCCTGAATGTAGAGTGAGTTC  650

seq1  TTTTCATTCTCTATAACAGGTGATGATTTTATAACCTCCCAGTGTCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTCTATAACAGGTGATGATTTTATAACCTCCCAGTGTCATAC  700

seq1  TTTTGGTGCTATAAATTCAGTGAATCATTGCAAAATCCTCTAGGGAAAGC  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTGGTGCTATAAATTCAGTGAATCATTGCAAAATCCTCTA-GGAAAGC  749

seq1  TACATGTACATCATATATAAACAGTCTTGCTAAATTGTGCAGTTACTCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTACATCATATATAAACAGTCTTGCTAAATTGTGCAGTTACTCGT  799

seq1  TGAGATGCAGTCAAAATAAATGTTATTGTGCAGACACCAGAACTTTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCAGTCAAAATAAATGTTATTGTGCAGACACCAGAACTTTTGTT  849

seq1  TGGCATCCACTAACTGATATGCTTTCTATAACTTTGAAAGAGCCAAGTGA  900
      |||||| |||||||||||||||||||||| |||||| ||||| | |||| 
seq2  TGGCAT-CACTAACTGATATGCTTTCTATTACTTTG-AAGAG-CTAGTG-  895

seq1  AAGACTACCAAAAGGCTAAGATGATAGGAAGTGCTCAGTTCGAGTGTAAA  950
      ||||||||   || |||||||||||||  ||||||||| ||| |||| ||
seq2  AAGACTAC---AAAGCTAAGATGATAG--AGTGCTCAG-TCG-GTGT-AA  937

seq1  GATCTCCCAGACCTCTTTTAATACAAGGAAAAAATATGAA  990
      ||||| ||||| ||||||| |||||    |||||||||||
seq2  GATCT-CCAGA-CTCTTTT-ATACA---GAAAAATATGAA  971

seq1: chr14_93022411_93022945
seq2: B6Ng01-114J07.g_67_601 (reverse)

seq1  GCTACACCCCAGGTGATCTCATTTTCAGTGGCAGCAAAGACTGAATCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACCCCAGGTGATCTCATTTTCAGTGGCAGCAAAGACTGAATCAGC  50

seq1  CTGCTTCAAGGCTGGGGGAGGCTACAAGTGACACTGCTTATCTTGCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAAGGCTGGGGGAGGCTACAAGTGACACTGCTTATCTTGCCATT  100

seq1  GGAGATTCTGGTTATATCGTCTGATATATCTATTGTAATTTGAGTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTCTGGTTATATCGTCTGATATATCTATTGTAATTTGAGTTGAAA  150

seq1  TGTCCTTCAGGTGTGGACATTTTGAGGGCTTGTTTGCTAACTCAGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCAGGTGTGGACATTTTGAGGGCTTGTTTGCTAACTCAGATAAT  200

seq1  GCCACTACTTTGGATAGTCTGAATCTTTGGGAATTGGGCTCTGCCTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACTTTGGATAGTCTGAATCTTTGGGAATTGGGCTCTGCCTGGTT  250

seq1  AAAATAGATCCACTGGTAGTAGCAGTTTAAGGGTTATATTTCAGGTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATCCACTGGTAGTAGCAGTTTAAGGGTTATATTTCAGGTTCCT  300

seq1  GAAATTTTATCTGTTTCTGGGCCATTATAATGTAAACACTCTCTGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTATCTGTTTCTGGGCCATTATAATGTAAACACTCTCTGCCACA  350

seq1  TATTTCCAACATCAGAGTCTTAATTTTTCTGTTATGCTTTCCCTTCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAACATCAGAGTCTTAATTTTTCTGTTATGCTTTCCCTTCTAAT  400

seq1  GATGAAATGAAACCTTTTGAAACTTTAGGCCCAAATACATCTTGTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATGAAACCTTTTGAAACTTTAGGCCCAAATACATCTTGTGTCTC  450

seq1  TTAAGAAATTTCTAACCGGTATCTTGTCTCAATGATGTAAAAGAACTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATTTCTAACCGGTATCTTGTCTCAATGATGTAAAAGAACTACA  500

seq1  TCTGAACATGTTTCTTGCTGTTTTCTTCAGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  TCTGAACATGTTTCTTGCTGTTTTCTTCAGAATTC  535