BAC Information

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BAC

Clone NameB6Ng01-115L23
Chromosome14 (Build37)
Map Location 42,790,696 - 42,791,915
singlet/doubletsinglet
Overlap geneLOC666233
Upstream gene5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910
Downstream geneLOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115L23.bB6Ng01-115L23.g
ACCDH920930DH920931
length1,1861,176
definitionDH920930|Mus musculus domesticus DNA, BAC clone: B6Ng01-115L23, 5' end.DH920931|Mus musculus domesticus DNA, BAC clone: B6Ng01-115L23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgcaaacttctatgatagtgaaagactgtggaaatccctagg
aattggagtatgaagtgagacttagtacaacgtgtataggcacagaaatc
aaatgttgaaaaagcttagaagacagataggacaaaatatattgagtcca
actgatgctggggagtcaattaacaattcagagaacattggctctgaaca
atggcctccctgctcctttccttccaagtaggataggagcaggaggagag
gtacttggacaggtcttgaagttagcctttgctaaaaatgagtaaaaaat
caatttttcacagtcggtgcattcatacaggaaaggaggagatgactcag
tcactaaaggttctgagaggccacactgagctgcattcatgaactctcca
ttattcagtaagaacaactgcacttgattaagatgcttacatgaccttta
tacccagcacttccctctctgctactatctgtcatggtggaggattttct
cagggttgtctcttctgagctgtcaggacaaaagcaggcttttcctctga
tatgttttggtctcacaaactctcccctcaccagccagaaaatctcttct
tgaaatttcagcctcattatgaagcagcaagaaagtggaaacaatctatg
acagtacagatgagacctttggaagggaatgtgggttagataatgtcatc
agagtaaatccttgccttttgtaaaagccttctaaacaaatggttcccta
ggatatttcccaaccagagaacaggatagcatgcggcttatgtatttgca
atatggtgtgtgggagacaggcagctgattttagatagtcttaagtagcc
agggctggtcttgtacaaaacgcactaatgtggttcaaggttgatttgga
tcccaatagccaccctaaatatttgagtatcataattaagaaccacttct
tcatttctaaaattagtaagtcttctagtctaaatatttacctttacctt
ctctttttttttccttttttatacgtatttcttcaatacattccatgcta
tcccaagttcctccctacaactccctaccatcattccatttatggctgca
atcctgtactggggcattacgttgtcctgacatgaacctctccaatgagt
gcgactaggtcatctagatatacattgcagctagag
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagaatgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgcccggggcccagcaaa
acacagaagtggatgctcacagtcagctaatggatggatcatagggctcc
caatggaggagctagagaaagtagccaagagctaagggatctgcaactct
ataggtggaacaacattatgagctaacagtacccagagctcttgactcta
gctgcatatatatcaaaagatgctagtcggcaatcacttgtaaagagagg
cccaatggacctgcacttaattgctcagttacagggcaatacagtcaaag
gagagtggttggcaggagaatgggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42790696_42791915
seq2: B6Ng01-115L23.b_49_1234 (reverse)

seq1  CTCTAGCTGC-ATATATATCAAAAGATGACCTAGTCGGCCATCAATGGAA  49
      |||||||||| || ||||||   ||||||||||||| ||  ||| ||   
seq2  CTCTAGCTGCAATGTATATC--TAGATGACCTAGTC-GCACTCATTG---  44

seq1  AGAGAGGCCCATTGGTCAGGCAAACGTTATATGCCCCAGTACAGGGGAAT  99
       ||||||  |||  ||||||  |||||   |||||||||||||  ||| |
seq2  -GAGAGGTTCAT--GTCAGGACAACGT--AATGCCCCAGTACA--GGATT  87

seq1  GCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGGAGTTTGGGGGGGGGG  149
      ||    |||| |||   |||||  |  |||| |||||||  |  ||| ||
seq2  GC---AGCCATAAA--TGGAAT--GATGGTA-GGGAGTT--GTAGGGAGG  127

seq1  CTTTTGGGATAGCATTGGAAATGTAATTGAAGAAAATACGTAATAAAAAA  199
         ||||||||||||  | ||||| ||||||| |||||||| ||||||||
seq2  AACTTGGGATAGCAT--GGAATGT-ATTGAAG-AAATACGT-ATAAAAAA  172

seq1  AAAGAAAAAAAAGAGAAGGTAAAGGTAAATTATTTTAGACTAGAAGAACT  249
        | ||||||||||||||||||||||||||   ||||||||||||| |||
seq2  GGA-AAAAAAAAGAGAAGGTAAAGGTAAAT--ATTTAGACTAGAAG-ACT  218

seq1  TACTAATTTTAGAAATGAAGAAGTGGTTCTTAATTATTGATACTCAAATA  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACTAATTTTAGAAATGAAGAAGTGGTTCTTAATTA-TGATACTCAAATA  267

seq1  TTTAGGGTGGCTATTGGGATCCAAATCAACCTTG-ACCACATTAGTGCGT  348
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTAGGGTGGCTATTGGGATCCAAATCAACCTTGAACCACATTAGTGCGT  317

seq1  TTTGTACAAGACCAGCCCTGGCTACTTAAGACTATCTAAAATCAGCTGCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAAGACCAGCCCTGGCTACTTAAGACTATCTAAAATCAGCTGCC  367

seq1  TGTCTCCCACACACCATATTGCAAATACATAAGCCGCATGCTATCCTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCACACACCATATTGCAAATACATAAGCCGCATGCTATCCTGTT  417

seq1  CTCTGGTTGGGAAATATCCTAGGGAACCATTTGTTTAGAAGGCTTTTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTGGGAAATATCCTAGGGAACCATTTGTTTAGAAGGCTTTTACA  467

seq1  AAAGGCAAGGATTTACTCTGATGACATTATCTAACCCACATTCCCTTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAGGATTTACTCTGATGACATTATCTAACCCACATTCCCTTCCA  517

seq1  AAGGTCTCATCTGTACTGTCATAGATTGTTTCCACTTTCTTGCTGCTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCATCTGTACTGTCATAGATTGTTTCCACTTTCTTGCTGCTTCA  567

seq1  TAATGAGGCTGAAATTTCAAGAAGAGATTTTCTGGCTGGTGAGGGGAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGCTGAAATTTCAAGAAGAGATTTTCTGGCTGGTGAGGGGAGAG  617

seq1  TTTGTGGAGACCAAAACATATCAGAGGAAAAGCCTGCTTTTGTCCTGACA  698
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGT-GAGACCAAAACATATCAGAGGAAAAGCCTGCTTTTGTCCTGACA  666

seq1  GCTCAGAAGAGACAACCCTGAGAAAATCCTCCACCATGACAGATAGTAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAAGAGACAACCCTGAGAAAATCCTCCACCATGACAGATAGTAGC  716

seq1  AGAGAGGGAAGTGCTGGGTATAAAGGTCATGTAAGCATCTTAATCAAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGAAGTGCTGGGTATAAAGGTCATGTAAGCATCTTAATCAAGTG  766

seq1  AAGTTGTTCTTACTGAATAATGGAGAGTTCATGAATGCCAGCTCAGTGTG  848
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGTTGTTCTTACTGAATAATGGAGAGTTCATGAATG-CAGCTCAGTGTG  815

seq1  GCCTCTCAGGACCTTTAGTGGCTGAGTCATCTCCTCCTTTCCTGTATGAA  898
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GCCTCTCAGAACCTTTAGTGACTGAGTCATCTCCTCCTTTCCTGTATGAA  865

seq1  TGCACCGACTGTGAAAAATTGATTTTTTTACTCATTTTTAGCAAAGGCTA  948
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCACCGACTGTGAAAAATTGA-TTTTTTACTCATTTTTAGCAAAGGCTA  914

seq1  ACTTCAAGACCTGTCCAAGTACCTCTCCTCCTGCTCCTATCCTACTTGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGACCTGTCCAAGTACCTCTCCTCCTGCTCCTATCCTACTTGGA  964

seq1  AGGAAAGGAGCAGGGAGGCCATTGTTCAGAGCCAATGTTCTCTGAATTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGAGCAGGGAGGCCATTGTTCAGAGCCAATGTTCTCTGAATTGT  1014

seq1  TAATTGACTCCCCAGCATCAGTTGGACTCAATATATTTTGTCCTATCTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGACTCCCCAGCATCAGTTGGACTCAATATATTTTGTCCTATCTGT  1064

seq1  CTTCTAAGCTTTTTCAACATTTGATTTCTGTGCCTATACACGTTGTACTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGCTTTTTCAACATTTGATTTCTGTGCCTATACACGTTGTACTA  1114

seq1  AGTCTCACTTCATACTCCAATTCCCAGGGATTTCCACAGTCTTTCACTAT  1198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTCTCACTTCATACTCCAATTCCTAGGGATTTCCACAGTCTTTCACTAT  1164

seq1  CATAGAAGTTTGCAAAGAATTC  1220
      ||||||||||||||||||||||
seq2  CATAGAAGTTTGCAAAGAATTC  1186