BAC Information

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BAC

Clone NameB6Ng01-116J11
Chromosome14 (Build37)
Map Location 104,215,715 - 104,351,177
singlet/doubletdoublet
Overlap geneEdnrb
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116J11.bB6Ng01-116J11.g
ACCDH921551DH921552
length1,124972
definitionDH921551|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J11, 5' end.DH921552|Mus musculus domesticus DNA, BAC clone: B6Ng01-116J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,350,046 - 104,351,177)(104,215,715 - 104,216,688)
sequence
gaattctgctgatctccagaattttctcactggaaactctcctttctcat
cctctgtatttactcaatgggtcaacaaattataatttatccacagaatg
taacacagtcagtaatgaaaagaaataagctgtcaaagcaccagtgaaca
ttggtgaggagttttaaattcatattactaaatcagaaagctgagtcgga
accttataaaccaattaaatgtctcttatggtttgaactcatgtacccac
cactgagatagtctcactaaattccacaggctttttgttctacagaggga
gttcaaaaccagcctacctaagctaattgcctcttagctgaacgttgaaa
actcatatttatgtctaatgttctcattacattattgatttcaataataa
ttcttttggaatatctatttgactactttttaaatatttttttatgattt
cccttttcttatttctgcacattttaaaatttgttgatgttgaatcttct
tgataatggcttcttccttgtatgttttatcgacttgtcaagtgaataat
ttttccaggttttggcaattgtatatgtattgctttagtaaatattcatg
tgcacatatttgtatgaacatgaatttcaactcattctgctcatcttctc
aaagagctgctgccttttctcatgaccagaaacacaggaagtcctggaca
actcggttttcttagcttgttattatctggacctctaggttgtcctatgt
tcaaactatgaagggaatttggtaattgaaaattcttgcaagggacaggg
cggagagccttttcctgtgctgggctgtagcagagcctagtaaacatcct
tgccttttgcagtgagggtaagcttcttggttccacactttcaccaaaga
tgcaaagcttgaattgttcctgtttaagaatctctgtgtctctgtcctgc
cttgcttgcttacctcacagccattaagctataaactgaagtctatgaga
gacaagctacacatttcactgagaggctgcagactcaggtcgtgtgagtg
ttcactttgttaaagatcaaacaactctctccagtgtctcagctatggaa
ttccgggtgtgtagttttggtttt
gaattctgatcatttcaatgttggtaatgaccaaaaaagtttaccaacca
tattgccttttcttttgcatatagttacaatcagattagtgggtatgata
gtatgcataaaaatttattagtttttttttttttaagtttcaaattaagc
aattgaaacttcgttttaagaattgttttgcaatgtcatgctttcttgaa
tccagattcataggactggataataaactcctgaacagaacttcagtgaa
gttctcgtttttttaaacgtaagtggcatgtgaacgcactaggggctttt
aagagctctgctgaagtgctgactaagaatctaagtgcttccccacggag
gagggcttcattccttcccacagctttcttaggttgtaaacagcccgtga
atatatccggtgttgagcgtcagaacagttaaaaataatccctctcacac
gcgcgcacacctttctgctagcatggttttttccattttgatttggcaac
ggtttcattttgttttaatggtatctgtccacaatgaggacagtgagatt
cggcgagtgttcttgccttcaagacgagctgtatttattgctggaccgga
agttgtcatatccgtgatcgttggctttgaacttcaggcaggactgcttc
tcctccaaggactgcttttcctcaaacgtttggcaccagcagcacaaaca
tgactgtatgaaacagaacgaccatttacatgcgtactcaggcacacggc
caccgctctgctcttcttgcgctggggctctgactatccttgcaagtgtg
gggttccggttcctctctttccatacccctttaccccccccccttaaaaa
gagatgcaattaaggccagaagatggcctggagacatgtttgagcactaa
gaactcatggttggaaagagaacagacatctgaagttgtctatgtgcaca
cacacatgcacatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104350046_104351177
seq2: B6Ng01-116J11.b_44_1167 (reverse)

seq1  AAAACCAAAAACTACACACC--GAATTCCATAGCTGAGACACTGGAGAG-  47
      |||||| |||||||||||||  ||||||||||||||||||||||||||| 
seq2  AAAACC-AAAACTACACACCCGGAATTCCATAGCTGAGACACTGGAGAGA  49

seq1  GTTGGTTTTGATCCTATAACAAAGTGAACACTCACACCGACCTTGAGTCT  97
      ||||  |||||| || |||||||||||||||||||| ||||| |||||||
seq2  GTTG--TTTGAT-CTTTAACAAAGTGAACACTCACA-CGACC-TGAGTCT  94

seq1  GCAGCCCTCTCAGTGAAATGTGTAGCTTTGTCTCTCATAGACTTCAGTTT  147
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCAG-CCTCTCAGTGAAATGTGTAGC-TTGTCTCTCATAGACTTCAGTTT  142

seq1  AATAGCTTAATGGCTGTGAGGTAAAGCAAGCAAGGCAGGACAGAGACACA  197
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  -ATAGCTTAATGGCTGTGAGGT-AAGCAAGCAAGGCAGGACAGAGACACA  190

seq1  GAGATTTCTTAAACAGGAACAATTCAAGCTTTGCATCTTTGGTGAAAGTG  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGA-TTCTTAAACAGGAACAATTCAAGCTTTGCATCTTTGGTGAAAGTG  239

seq1  TGGAACCAAGAAGCTTACCCTCACTGCAAAAGGCAAGGATGTTTACTAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCAAGAAGCTTACCCTCACTGCAAAAGGCAAGGATGTTTACTAGG  289

seq1  CTCTGCTACAGCCCAGCACAGGAAAAGGCTCTCCGCCCTGTCCCTTGCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTACAGCCCAGCACAGGAAAAGGCTCTCCGCCCTGTCCCTTGCAA  339

seq1  GAATTTTCAATTACCAAATTCCCTTCATAGTTTGAACATAGGACAACCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCAATTACCAAATTCCCTTCATAGTTTGAACATAGGACAACCTA  389

seq1  GAGGTCCAGATAATAACAAGCTAAGAAAACCGAGTTGTCCAGGACTTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAGATAATAACAAGCTAAGAAAACCGAGTTGTCCAGGACTTCCT  439

seq1  GTGTTTCTGGTCATGAGAAAAGGCAGCAGCTCTTTGAGAAGATGAGCAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGGTCATGAGAAAAGGCAGCAGCTCTTTGAGAAGATGAGCAGA  489

seq1  ATGAGTTGAAATTCATGTTCATACAAATATGTGCACATGAATATTTACTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGAAATTCATGTTCATACAAATATGTGCACATGAATATTTACTA  539

seq1  AAGCAATACATATACAATTGCCAAAACCTGGAAAAATTATTCACTTGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATACATATACAATTGCCAAAACCTGGAAAAATTATTCACTTGACA  589

seq1  AGTCGATAAAACATACAAGGAAGAAGCCATTATCAAGAAGATTCAACATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGATAAAACATACAAGGAAGAAGCCATTATCAAGAAGATTCAACATC  639

seq1  AACAAATTTTAAAATGTGCAGAAATAAGAAAAGGGAAATCATAAAAAAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTTTAAAATGTGCAGAAATAAGAAAAGGGAAATCATAAAAAAAT  689

seq1  ATTTAAAAAGTAGTCAAATAGATATTCCAAAAGAATTATTATTGAAATCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGTAGTCAAATAGATATTCCAAAAGAATTATTATTGAAATCA  739

seq1  ATAATGTAATGAGAACATTAGACATAAATATGAGTTTTCAACGTTCAGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTAATGAGAACATTAGACATAAATATGAGTTTTCAACGTTCAGCT  789

seq1  AAGAGGCAATTAGCTTAGGTAGGCTGGTTTTGAACTCCCTCTGTAGAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAATTAGCTTAGGTAGGCTGGTTTTGAACTCCCTCTGTAGAACA  839

seq1  AAAAGCCTGTGGAATTTAGTGAGACTATCTCAGTGGTGGGTACATGAGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTGTGGAATTTAGTGAGACTATCTCAGTGGTGGGTACATGAGTT  889

seq1  CAAACCATAAGAGACATTTAATTGGTTTATAAGGTTCCGACTCAGCTTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATAAGAGACATTTAATTGGTTTATAAGGTTCCGACTCAGCTTTC  939

seq1  TGATTTAGTAATATGAATTTAAAACTCCTCACCAATGTTCACTGGTGCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGTAATATGAATTTAAAACTCCTCACCAATGTTCACTGGTGCTT  989

seq1  TGACAGCTTATTTCTTTTCATTACTGACTGTGTTACATTCTGTGGATAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTTATTTCTTTTCATTACTGACTGTGTTACATTCTGTGGATAAA  1039

seq1  TTATAATTTGTTGACCCATTGAGTAAATACAGAGGATGAGAAAGGAGAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTGTTGACCCATTGAGTAAATACAGAGGATGAGAAAGGAGAGT  1089

seq1  TTCCAGTGAGAAAATTCTGGAGATCAGCAGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGAGAAAATTCTGGAGATCAGCAGAATTC  1124

seq1: chr14_104215715_104216688
seq2: B6Ng01-116J11.g_67_1038

seq1  GAATTCTGATCATTTCAATGTTGGTAATGACCAAAAAAGTTTACCAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATCATTTCAATGTTGGTAATGACCAAAAAAGTTTACCAACCA  50

seq1  TATTGCCTTTTCTTTTGCATATAGTTACAATCAGATTAGTGGGTATGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCTTTTCTTTTGCATATAGTTACAATCAGATTAGTGGGTATGATA  100

seq1  GTATGCATAAAAATTTATTAGTTTTTTTTTTTTTAAGTTTCAAATTAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATAAAAATTTATTAGTTTTTTTTTTTTTAAGTTTCAAATTAAGC  150

seq1  AATTGAAACTTCGTTTTAAGAATTGTTTTGCAATGTCATGCTTTCTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAACTTCGTTTTAAGAATTGTTTTGCAATGTCATGCTTTCTTGAA  200

seq1  TCCAGATTCATAGGACTGGATAATAAACTCCTGAACAGAACTTCAGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTCATAGGACTGGATAATAAACTCCTGAACAGAACTTCAGTGAA  250

seq1  GTTCTCGTTTTTTTAAACGTAAGTGGCATGTGAACGCACTAGGGGCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCGTTTTTTTAAACGTAAGTGGCATGTGAACGCACTAGGGGCTTTT  300

seq1  AAGAGCTCTGCTGAAGTGCTGACTAAGAATCTAAGTGCTTCCCCACGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCTGCTGAAGTGCTGACTAAGAATCTAAGTGCTTCCCCACGGAG  350

seq1  GAGGGCTTCATTCCTTCCCACAGCTTTCTTAGGTTGTAAACAGCCCGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTCATTCCTTCCCACAGCTTTCTTAGGTTGTAAACAGCCCGTGA  400

seq1  ATATATCCGGTGTTGAGCGTCAGAACAGTTAAAAATAATCCCTCTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCGGTGTTGAGCGTCAGAACAGTTAAAAATAATCCCTCTCACAC  450

seq1  GCGCGCACACCTTTCTGCTAGCATGGTTTTTTCCATTTTGATTTGGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCACACCTTTCTGCTAGCATGGTTTTTTCCATTTTGATTTGGCAAC  500

seq1  GGTTTCATTTTGTTTTAATGGTATCTGTCCACAATGAGGACAGTGAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATTTTGTTTTAATGGTATCTGTCCACAATGAGGACAGTGAGATT  550

seq1  CGGCGAGTGTTCTTGCCTTCAAGACGAGCTGTATTTATTGCTGGACCGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGAGTGTTCTTGCCTTCAAGACGAGCTGTATTTATTGCTGGACCGGA  600

seq1  AGTTGTCATATCCGTGATCGTTGGCTTTGAACTTCAGGCAGGACTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCATATCCGTGATCGTTGGCTTTGAACTTCAGGCAGGACTGCTTC  650

seq1  TCCTCCAAGGACTGCTTTTCCTCAAACGTTTGGCACCAGCAGCACAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGGACTGCTTTTCCTCAAACGTTTGGCACCAGCAGCACAAACA  700

seq1  TGACTGTATGAAACAGAACGACCA-TTACATGCGTACTCAGGCACACGGC  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACTGTATGAAACAGAACGACCATTTACATGCGTACTCAGGCACACGGC  750

seq1  CACCGCTCTGCTCTTCTTGCGCTGGGGCTCTGACTATCCTTGCAAGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCTCTGCTCTTCTTGCGCTGGGGCTCTGACTATCCTTGCAAGTGTG  800

seq1  GGGTTCCGGTTCCCTCTCTTTCCATACCCCCTTTACCCCCCCCCCTTAAA  849
      ||||||||||| |||||||||||||| |||||||||||||||||||| ||
seq2  GGGTTCCGGTT-CCTCTCTTTCCATA-CCCCTTTACCCCCCCCCCTT-AA  847

seq1  AAAGAGATGCAATTAAGGCCAGCAAGATGGCCTGGAGACATGTTTGAGCA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGAGATGCAATTAAGGCCAG-AAGATGGCCTGGAGACATGTTTGAGCA  896

seq1  CT-AGAACTCATGG-TGGAAAGAGAACAGACATCTGAAAGTTGTCTATGT  947
      || ||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CTAAGAACTCATGGTTGGAAAGAGAACAGACATCTG-AAGTTGTCTATGT  945

seq1  GCACACACACATGCACATGTGTGTGTG  974
      |||||||||||||||||||||||||||
seq2  GCACACACACATGCACATGTGTGTGTG  972