BAC Information

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BAC

Clone NameB6Ng01-117B13
Chromosome14 (Build37)
Map Location 85,152,977 - 85,311,161
singlet/doubletdoublet
Overlap geneLOC629794
Upstream geneLOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B13.bB6Ng01-117B13.g
ACCDH921925DH921926
length1,0961,175
definitionDH921925|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B13, 5' end.DH921926|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,152,977 - 85,154,099)(85,309,965 - 85,311,161)
sequence
gaattctctgcaacacaaggatggtgcttttaactggtatctctgaagtt
ccagaaggatcttatagcttatgcaaagctcccatttttgtctcttgttt
acctgtatttaaaatggacaacttatatatgtatactagaagaagaataa
atagaattaagtttactgtctagagttctgaagcattagatgagttactt
aattcttctcaaactcagcaaccatcctgggacatgctttaccaaaatgt
ccagttagtatatcacattgaggtgaagacgcacctaaccttattctaac
ttgaagtatatcacaatatcacacgggcaaaatgagtttattacctagag
actgactagttttctcttttaaggtcttatcctgatacgctggtagaaat
aaaaaaaaaaaaaaagtttcaggactttctgtactaaagaacttatatca
tgttcctaggccggtggtttatttcaaatagttaatgaaggctatttatc
tcaggtgaagtgtccatgactatttgtaggacagacaatatggtattggc
tatgttgtatctactacactgtgtgtttctctggttctcttggaatttca
gaatctttctgagaatgagcagatgctctgccctgccaccctgctcaggg
ttctagagtcatgcttatcctgcagacttcttggtggcttatgtccaaca
atacttcagtttctttccttaatctctaccatttttcatttgggtactca
ttcttttgaggattcaggaatgatgtagaaactcaattttatttactttc
ttttttttaatggtatttcatttattcaatgcaaacgagggacattaagc
cactttcattcattttctcccaaactctcaaagctcctttccctcattaa
aacaaaacctaaagggaaaagcaaaaacaaaaaacaaacaaacaaagtaa
acaacaaacacacacaaaaacccacaaaccccaaaccacactgagaaaca
aacacattgtacaaaaaccacacagtatcaggccgccatcacaaaactgg
atgggtgtatatagaataatactaactgaaggtcatgaaagagctg
gaattccagagaccctacctttagtttaggagcatgggaagctgatgaaa
ggtggggaaagaggagtaacttttcctagggatgtgattccttagagatt
tcctatgactctcagggtaaccttgggtttatgcatgtatggcaacatga
gctagacaaaatgggttttgataaacagacaaacaaacaaacaagacccc
caaacacacaaatatataaataataaaatgacaatatgaagtcaggagaa
agatatgatggggtatcctaggtggatttgaaggcagaaagagaaggatg
agttatgatcaatttactgcatacaaatataaaaatgatcaagaaaaaat
taaaaatgaaaactttaaatatgaaaatacataatataaggaatagaggg
ataataaaaattactttaaacttttaaattagtattagtaacatggtaag
ctatgatgttctcaaaatttaaagaaaaaaattaagcttatacttaatag
tatgattaggcaaatagtatgataagcaaatagtagtagtatgataggca
aaattgaggtgaagaaaaactaaattggacaaattggcaagatatcataa
ttatcaataaaataatgacagtggagagatgttatgtgaaagaaaatcca
atcactcttaaaataaaatcaaggaacagaatgttatgactgctcacctg
agtagtctgtcaacttgactggattgagattctagctgtttccagagaag
ccatatgggactgggagtaggaagcaaatatctgccctcagcagcagtgg
aaccaacaagtgggcaacctgctgtggtgaagaaaagggtgtgatgcagc
accaagcttgcagcctgagctgagaggtcttttttatcgcaggcaccatg
aactgacatacaatccagattcttcccctctcagaaccagaaactaaccc
tctaagtagtttccaagctttagttcacaatgtatctctaaatatctgtt
ccagtatgggagcctgtttctacaccttctagatgagaccctcctaaggc
atacacgaatgataaatgtccctttgctgtatacaaacaattattctcct
ggtgcgtcctctaaagaactctgccaatgcactaaatatatgaattttaa
taattcgacagccaatgaagatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85152977_85154099
seq2: B6Ng01-117B13.b_47_1142

seq1  GAATTCTCTGCAACACAAGGATGGTGCTTTTAACTGGTATCTCTGAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAACACAAGGATGGTGCTTTTAACTGGTATCTCTGAAGTT  50

seq1  CCAGAAGGATCTTATAGCTTATGCAAAGCTCCCATTTTTGTCTCTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGATCTTATAGCTTATGCAAAGCTCCCATTTTTGTCTCTTGTTT  100

seq1  ACCTGTATTTAAAATGGACAACTTATATATGTATACTAGAAGAAGAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATTTAAAATGGACAACTTATATATGTATACTAGAAGAAGAATAA  150

seq1  ATAGAATTAAGTTTACTGTCTAGAGTTCTGAAGCATTAGATGAGTTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTAAGTTTACTGTCTAGAGTTCTGAAGCATTAGATGAGTTACTT  200

seq1  AATTCTTCTCAAACTCAGCAACCATCCTGGGACATGCTTTACCAAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTCAAACTCAGCAACCATCCTGGGACATGCTTTACCAAAATGT  250

seq1  CCAGTTAGTATATCACATTGAGGTGAAGACGCACCTAACCTTATTCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGTATATCACATTGAGGTGAAGACGCACCTAACCTTATTCTAAC  300

seq1  TTGAAGTATATCACAATATCACACGGGCAAAATGAGTTTATTACCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTATATCACAATATCACACGGGCAAAATGAGTTTATTACCTAGAG  350

seq1  ACTGACTAGTTTTCTCTTTTAAGGTCTTATCCTGATACGCTGGTAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTAGTTTTCTCTTTTAAGGTCTTATCCTGATACGCTGGTAGAAAT  400

seq1  AAAAAAAAAAAAAAAGTTTCAGGACTTTCTGTACTAAAGAACTTATATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGTTTCAGGACTTTCTGTACTAAAGAACTTATATCA  450

seq1  TGTTCCTAGGCCGGTGGTTTATTTCAAATAGTTAATGAAGGCTATTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTAGGCCGGTGGTTTATTTCAAATAGTTAATGAAGGCTATTTATC  500

seq1  TCAGGTGAAGTGTCCATGACTATTTGTAGGACAGACAATATGGTATTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGAAGTGTCCATGACTATTTGTAGGACAGACAATATGGTATTGGC  550

seq1  TATGTTGTATCTACTACACTGTGTGTTTCTCTGGTTCTCTTGGAATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTATCTACTACACTGTGTGTTTCTCTGGTTCTCTTGGAATTTCA  600

seq1  GAATCTTTCTGAGAATGAGCAGATGCTCTGCCCTGCCACCCTGCTCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCTGAGAATGAGCAGATGCTCTGCCCTGCCACCCTGCTCAGGG  650

seq1  TTCTAGAGTCATGCTTATCCTGCAGACTTCTTGGTGGCTTATGTCCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTCATGCTTATCCTGCAGACTTCTTGGTGGCTTATGTCCAACA  700

seq1  ATACTTCAGTTTCTTTCCTTAATCTCTACCATTTTTCATTTGGGTACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAGTTTCTTTCCTTAATCTCTACCATTTTTCATTTGGGTACTCA  750

seq1  TTCTTTTGAGGATTCAGGAATGATGTAGAAACTCAATTTTATTTACTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGAGGATTCAGGAATGATGTAGAAACTCAATTTTATTTACTTTC  800

seq1  TTTTTTTTAATGGTATTTCATTTATTCAATGCAAACGAGGGACATTAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAATGGTATTTCATTTATTCAATGCAAACGAGGGACATTAAGC  850

seq1  CACTTTCATTCATTTTCTCCCAAACTCTCAAAGCTCCTTTCCCTCATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCATTCATTTTCTCCCAAACTCTCAAAGCTCCTTTCCCTCATTAA  900

seq1  AACAAAACCTAAAGGGAAAAAGCAAAAAACAAAAAAACAAAACAAAACAA  950
      |||||||||||||||| |||||||||||   ||||||||||   ||||||
seq2  AACAAAACCTAAAGGG-AAAAGCAAAAA--CAAAAAACAAA--CAAACAA  945

seq1  AGTAA--AACAAACAAAACAACAACAACAAAAAAACCCAACAAACCCCCA  998
      |||||  ||||||||           ||| |||||||| |||||||||  
seq2  AGTAAACAACAAACA----------CACACAAAAACCC-ACAAACCCC--  982

seq1  AAACCCACACTGAGAAACAAACACATTTGTACAAAAAACCACACAGTATC  1048
       || ||||||||||||||||||||| |||||| |||||||||||||||||
seq2  -AAACCACACTGAGAAACAAACACA-TTGTAC-AAAAACCACACAGTATC  1029

seq1  CAAGCCCGCCCATCACAAAACTGGATGGGTGTTATTATAGGAATAATACC  1098
        || ||| |||||||||||||||||||||||   |||| |||||||| |
seq2  --AGGCCG-CCATCACAAAACTGGATGGGTGT--ATATA-GAATAATA-C  1072

seq1  TAACTGACAGTCATGGAAAGAGCTG  1123
      |||||||  ||||| ||||||||||
seq2  TAACTGAAGGTCAT-GAAAGAGCTG  1096

seq1: chr14_85309965_85311161
seq2: B6Ng01-117B13.g_68_1242 (reverse)

seq1  AAAATCTTCTATTTGCTGTATCGAATTATTAAAAATATCATAAATTTATT  50
      ||||||||| ||| ||||  ||||||||||||||   ||||| ||   ||
seq2  AAAATCTTC-ATTGGCTG--TCGAATTATTAAAA--TTCATATAT---TT  42

seq1  AGTGCATTATGCAGAGTTCTCTAGAGGACCGCACCAAGAGAATATATGTT  100
      ||||||||  |||||||||| ||||||| ||||||| |||||||  ||||
seq2  AGTGCATT-GGCAGAGTTCTTTAGAGGA-CGCACCAGGAGAATAATTGTT  90

seq1  TGTATACAGCAAAGGGACATTTATTCTATCGTGTATGCCTTAGGAGGGTT  150
      ||||||||||||||||||||||| ||  ||||||||||||||||||||| 
seq2  TGTATACAGCAAAGGGACATTTA-TCATTCGTGTATGCCTTAGGAGGGT-  138

seq1  CTTCATTCTAGAAAGGTGTAGAAACAGGCTCCCAATACTGGAAACAGGAT  200
        ||| ||||| ||||||||||||||||||||| ||||||| |||| |||
seq2  -CTCA-TCTAG-AAGGTGTAGAAACAGGCTCCC-ATACTGG-AACA-GAT  182

seq1  ATTTTAGGAGATACAATTGTGAACTAAAAGCTTGGAAACTACTTAGAGGG  250
      ||||   ||||||| |||||||||| ||||||||||||||||||||||||
seq2  ATTT--AGAGATAC-ATTGTGAACT-AAAGCTTGGAAACTACTTAGAGGG  228

seq1  TTAGTTTCTGGTTCTGAGAGGGGAAGAATCTGGATTGTATGTCAGTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCTGGTTCTGAGAGGGGAAGAATCTGGATTGTATGTCAGTTCAT  278

seq1  GGTGCCTGCGAT-AAAAAGACCTCTCAGCTCAGGCCTGCAAGCTTGGTGC  349
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  GGTGCCTGCGATAAAAAAGACCTCTCAGCTCAGG-CTGCAAGCTTGGTGC  327

seq1  TGCATCACACCCTTTTCTTCACCACAGCAGGTTGCCCACTTGTTGGTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACACCCTTTTCTTCACCACAGCAGGTTGCCCACTTGTTGGTTCC  377

seq1  ACTGCTGCTGAGGGCAGATATTTGCTTCCTACTCCCAGTCCCATATGGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGCTGAGGGCAGATATTTGCTTCCTACTCCCAGTCCCATATGGCT  427

seq1  TCTCTGGAAACAGCTAGAATCTCAATCCAGTCAAGTTGACAGACTACTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAAACAGCTAGAATCTCAATCCAGTCAAGTTGACAGACTACTCA  477

seq1  GGTGAGCAGTCATAACATTCTGTTCCTTGATTTTATTTTAAGAGTGATTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAGTCATAACATTCTGTTCCTTGATTTTATTTTAAGAGTGATTG  527

seq1  GATTTTCTTTCACATAACATCTCTCCACTGTCATTATTTTATTGATAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTTCACATAACATCTCTCCACTGTCATTATTTTATTGATAATT  577

seq1  ATGATATCTTGCCAATTTGTCCAATTTAGTTTTTCTTCACCTCAATTTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCTTGCCAATTTGTCCAATTTAGTTTTTCTTCACCTCAATTTTG  627

seq1  CCTATCATACTACTACTATTTGCTTATCATACTATTTGCCTAATCATACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCATACTACTACTATTTGCTTATCATACTATTTGCCTAATCATACT  677

seq1  ATTAAGTATAAGCTTAATTTTTTTCTTTAAATTTTGAGAACATCATAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTATAAGCTTAATTTTTTTCTTTAAATTTTGAGAACATCATAGCT  727

seq1  TACCATGTTACTAATACTAATTTAAAAGTTTAAAGTAATTTTTATTATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTTACTAATACTAATTTAAAAGTTTAAAGTAATTTTTATTATCC  777

seq1  CTCTATTCCTTATATTATGTATTTTCATATTTAAAGTTTTCATTTTTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCCTTATATTATGTATTTTCATATTTAAAGTTTTCATTTTTAAT  827

seq1  TTTTTCTTGATCATTTTTATATTTGTATGCAGTAAATTGATCATAACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTGATCATTTTTATATTTGTATGCAGTAAATTGATCATAACTCA  877

seq1  TCCTTCTCTTTCTGCCTTCAAATCCACCTAGGATACCCCATCATATCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTTCTGCCTTCAAATCCACCTAGGATACCCCATCATATCTTT  927

seq1  CTCCTGACTTCATATTGTCATTTTATTATTTATATATTTGTGTGTTTGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTTCATATTGTCATTTTATTATTTATATATTTGTGTGTTTGGG  977

seq1  GGTCTTGTTTGTTTGTTTGTCTGTTTATCAAAACCCATTTTGTCTAGCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTTTGTTTGTTTGTCTGTTTATCAAAACCCATTTTGTCTAGCTC  1027

seq1  ATGTTGCCATACATGCATAAACCCAAGGTTACCCTGAGAGTCATAGGAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCATACATGCATAAACCCAAGGTTACCCTGAGAGTCATAGGAAA  1077

seq1  TCTCTAAGGAATCACATCCCTAGGAAAAGTTACTCCTCTTTCCCCACCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGGAATCACATCCCTAGGAAAAGTTACTCCTCTTTCCCCACCTT  1127

seq1  TCATCAGCTTCCCATGCTCCTAAACTAAAGGTAGGGTCTCTGGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCTTCCCATGCTCCTAAACTAAAGGTAGGGTCTCTGGAATTC  1175