BAC Information

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BAC

Clone NameB6Ng01-117E08
Chromosome14 (Build37)
Map Location 89,547,131 - 89,548,172
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E08.bB6Ng01-117E08.g
ACCDH922052DH922053
length1,0481,287
definitionDH922052|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E08, 5' end.DH922053|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttttgttaacctgtgtagtagcttcccataccaaggacattgga
agggcaaagtgaaggtgccgtgtgtgtctgacaacttcatgtccaatgag
ttgtgcaggtgttggcttcagtattcctgtctaactgagaagcaacctat
tatcttggcaactgcctgcattgtttggggacttctagtggttctctttg
gccaacaactcaattggatataaacaattgccagtactgggtacttcatt
tggtgataaaagaaggaccattgggaatctgtctccttcattatttcctg
attcattagggtcaccttgacataggttagggagtctccactgctttagg
ggttcataccacccctcaaatgtccctcaattcaggctggtccttccctc
atttgacctgtaattccatgttctcctattcctcctgttcctgccaccct
acggtatccccatccactcataaaatctattctattttatcctttctggg
atgttcctttgttccccatattctgaatgagatagttttaaatgatttct
ttttggaaaaaaagatggtgaggttttaagagtttttctaagtataggtt
tttgttttgttttggttttttttttttgacatttttttgacatttttttc
catttttattaggtatttagctcatttacatttccaatgctataccaaaa
gtcccccatacccacccacccccactcccctacccacccactcccccttt
ttggccctggcgttcccctgtactggggcatataaagtttgcgtgtccaa
tgggcctcttttccagtgatggccgactaggccattttttgatacatatg
cagctagagtcaagagctccggggtactggttagttcataatgctgttct
actatagggttgcagatccctttagctccttggctactttctctagctcc
tccattgggaggcctgtgattcatccatagctgactgtgagcatccattc
ttgttgctagccccgcctagtcctcagagacagctaatttgggtcctt
gaattccatgatcatgggcccactgtcgtacttctctagctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccatgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaaaccagaaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtaatcaaactaccacca
ggttgctggctggtcacctcgaggaatggtgccatatctgggactcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagccttggtgagtggaagcccgtgttgctgagcccaagcataatctcc
atctcgaccaccatggccactttgttcatgggcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcatatcc
acttgattattgaactcctcggctgaagtcaccttttggtgagcatttac
atgggacacaaatatcttcacatcctttacccatttggagagatctatcc
acatacttcttccccagatgtctttctcaccaattttccaattgtgatct
ttccaagtccctgaccatccagccaatccattggctacagcccatgagtc
agtgaataatcgtacatctggcaattttttcttgcaaacaaactgtaata
ccatgcgtactgcccgaagttctgcccactgtgaagatttcccttcacct
gtgtctttcagggttgtcccagaaaggggttgtaatgctgcagttgtccc
agaaaggggtagtaatgctgcagttgtcccagaaaggggttgtaatgctg
cacgtggtgcctgcataacatgcagagccatcagtaaaccaggctctagt
cttctctcttcagtcagttgatcatagggaaacccatgaggctataggca
catgtttggcagcagatggcattgtaacaggagtagaaacatagcatttg
aacacttcttcaggaacttgctgtgccttcaggacctgcatgggccgatc
acgtctatatccctcccatttgatataaactgctcgctgtgcgaattccc
tttagacatgccagggccgtgataccagctatgattgggattcaggtgca
atgtacctgtgtctatggcaacgtcagcttctaggctaacagcctagcgc
tttccacgagagaagatgatctctcgcacatgagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89547131_89548172
seq2: B6Ng01-117E08.b_64_1094

seq1  TGTGTAGTAGCTTCCCATACCAAGGACATTGGAAGGGCAAAGTGAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTAGCTTCCCATACCAAGGACATTGGAAGGGCAAAGTGAAGGTG  50

seq1  CCGTGTGTGTCTGACAACTTCATGTCCAATGAGTTGTGCAGGTGTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGTGTCTGACAACTTCATGTCCAATGAGTTGTGCAGGTGTTGGCT  100

seq1  TCAGTATTCCTGTCTAACTGAGAAGCAACCTATTATCTTGGCAACTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTCCTGTCTAACTGAGAAGCAACCTATTATCTTGGCAACTGCCT  150

seq1  GCATTGTTTGGGGACTTCTAGTGGTTCTCTTTGGCCAACAACTCAATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTTGGGGACTTCTAGTGGTTCTCTTTGGCCAACAACTCAATTGG  200

seq1  ATATAAACAATTGCCAGTACTGGGTACTTCATTTGGTGATAAAAGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACAATTGCCAGTACTGGGTACTTCATTTGGTGATAAAAGAAGGA  250

seq1  CCATTGGGAATCTGTCTCCTTCATTATTTCCTGATTCATTAGGGTCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGGAATCTGTCTCCTTCATTATTTCCTGATTCATTAGGGTCACCT  300

seq1  TGACATAGGTTAGGGAGTCTCCACTGCTTTAGGGGTTCATACCACCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGGTTAGGGAGTCTCCACTGCTTTAGGGGTTCATACCACCCCTC  350

seq1  AAATGTCCCTCAATTCAGGCTGGTCCTTCCCTCATTTGACCTGTAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCTCAATTCAGGCTGGTCCTTCCCTCATTTGACCTGTAATTCC  400

seq1  ATGTTCTCCTATTCCTCCTGTTCCTGCCACCCTACGGTATCCCCATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCCTATTCCTCCTGTTCCTGCCACCCTACGGTATCCCCATCCAC  450

seq1  TCATAAAATCTATTCTATTTTATCCTTTCTGGGATGTTCCTTTGTTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATCTATTCTATTTTATCCTTTCTGGGATGTTCCTTTGTTCCCC  500

seq1  ATATTCTGAATGAGATAGTTTTAAATGATTTCTTTTTGGAAAAAAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGAATGAGATAGTTTTAAATGATTTCTTTTTGGAAAAAAAGATG  550

seq1  GTGAGGTTTTAAGAGTTTTTCTAAGTATAGGTTTTTGTTTTGTTTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTTTAAGAGTTTTTCTAAGTATAGGTTTTTGTTTTGTTTTGGTT  600

seq1  TTTTTTTTTTGACATTTTTTTGACATTTTTTTCCATTTTTATTAGGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGACATTTTTTTGACATTTTTTTCCATTTTTATTAGGTATT  650

seq1  TAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCC  700

seq1  ACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCC  750

seq1  CTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAG  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCT-TTTCCAG  799

seq1  TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAG  850
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGATGGCCGACTAGGCCATTTTTTGATACATATGCAGCTAGAGTCAAGAG  849

seq1  CTCCGGGGTACTGGTTAGTTCATAATGCTGTTCCACCTATAGGGTTGCAG  900
      ||||||||||||||||||||||||||||||||| | ||||||||||||||
seq2  CTCCGGGGTACTGGTTAGTTCATAATGCTGTTCTA-CTATAGGGTTGCAG  898

seq1  ATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCT  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGGCCT  948

seq1  GTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG  1000
      ||||| |||||| |||||||||||||||||||| |||| || ||||||| 
seq2  GTGATTCATCCA-TAGCTGACTGTGAGCATCCA-TTCT-TG-TTGCTAG-  993

seq1  CCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTT  1042
       ||| || ||||| | | ||||||||||| || |||||||||
seq2  -CCCCGCCTAGTC-CTC-AGAGACAGCTA-ATTTGGGTCCTT  1031