BAC Information

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BAC

Clone NameB6Ng01-118N04
Chromosome3 (Build37)14 (Build37)
Map Location 41,059,224 - 41,059,737116,217,156 - 116,218,347
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118N04.bB6Ng01-118N04.g
ACCDH923203DH923204
length1,0081,167
definitionDH923203|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N04, 5' end.DH923204|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(116,217,156 - 116,218,347)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaacttcttgagttatttatatatattggatattagtcctc
tatctgatttaagataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgatggtgtcctttcccttacagaagcattgcagtttcat
gaggtcccacttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttttcccctgtgcccatatcttcgaggcttttcccca
ctttctcctctataggtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaagagatagaaatggatcaattcg
cattcttctacatgataaccaccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttcctctgtatggttttagctcccttgtggaagatcaat
tgaccacaggtgtgtgggttcatttctgcatcttcaattctattccattg
gtctatttttctgtcaatataccagtaccatgccgttttttgtcacaatt
gctctgtagtaaagctttaggtcaagcatggaaatttcaacagagtttct
tttacccttgagaagagtttttgctaccctaggttttttcttattccaga
tgaatttgcagattgctctttctaattcgttgaagaattgagttagaatt
ttgatggggtttgcattgaatctgtagattgcttttggcatgatagccat
ttttacaatgttgatcctgccaatccatgagcatgggagatatttccatc
ttctgagatcttctttaatttctttcttcagagacttgaagttctatcat
acagatctttcacttccttagttagggtcattgccaggtattttatatta
tttgtgactatgtgaaggtgtgtttccctaatttctttctcagcctgtta
ttctttgg
gaattccaaacatgtgttagaccccatgttagagtcacagctacagtgtg
tggtatgtagacccagatggctatatagacacagatatgtggtatgtaag
atataagtagataaatatagatatgaacacacagattggcaatcgaatct
agaaacaggaataaatatttaattttacagtgaaataaaaatttaatgta
tctggaatacttcagttaaaagtttcatttccttgtttgttacaaacccg
cactgtgccatcagtctggttgtctgtattcaattctgctgcatagcatc
tcattcagtgacactgctaagcattttgtcttttacacacagttttaagg
tctttggagaaggaagttgtcttatgtttatattctatttcccaactctg
gtctcaatcaaataccttataatttgttgctaaataacttcatgtatatt
tcacctatgaatgcagcgatacatgactacatttaaatatttatatctct
ataacattttatgtgtgtatatatataagcataaaccagatacaaattgt
aagattactttttactgtgtgggcttgtttgagtactcaaaggtacttta
agatgaccatgctcattatacaaatattacttgacgcatatacaataaag
ctgaccagttatttaatgaagggacttaataaagagataacacatgaata
attaagataaactctagtagaaaagtggagtgtaagccaatgacttcagc
tctttaagtttaatagactttgttttgatcagtgaggaagactttggtaa
gttgaggactaaaagtacctaatacaatttgattgagaaataatgaagaa
aacacatgtactaaagaagtcaattgaaggatggtccagactttaagctg
atactagcagtgcctatggtgctcaggcatattgtgcagtgatagacatt
gtggccctaaacttaaattggtcaaaccagttcggttccactagccatat
cccaactctgcaattaacccatctaagcagaagcatacatgctagcaaag
acagcaatatggttatttagatgctgggacaagctattctcatctctaat
cagcccatgttctatgttttgaatctccctgcctattgagtgagctagct
acaacctcatacacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-118N04.b_45_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||| |||||| ||||||||| ||||||||||||||||||| ||
seq2  CCACACACCTGTGGTCAATTGATCTTCCACAAGGGAGCTAAAACCATACA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||||||||||||||||| | ||||||| ||||||||||
seq2  TATCATGTAGAAGAATGCGAATTGATCCATTTCTATCTCTTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      || ||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ACCTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGG  250

seq1  --AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAA  298
        ||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  AAAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGAC  348
      | ||||| ||||||||||||||||||||| ||||||| |||| ||| |||
seq2  TTGACAAGTGGGACCTCATGAAACTGCAATGCTTCTGTAAGGGAAAGGAC  350

seq1  ACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTAC  397
      ||| ||||||||||||||||  ||||||||||||||||||||||||||||
seq2  ACCATCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCA  447
      ||||| |||||||||||| ||||||||||||||||||||| || ||||||
seq2  CTATCTTAAATCAGATAGAGGACTAATATCCAATATATATAAATAACTCA  450

seq1  AGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  497
      ||||| |||| |||||||||||||||||||||||| ||||||||||||||
seq2  AGAAGTTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCA  499

seq1  GAGCTAAACAAAGAATT  514
      |||||||||||||||||
seq2  GAGCTAAACAAAGAATT  516

seq1: chr14_116217156_116218347
seq2: B6Ng01-118N04.g_71_1237 (reverse)

seq1  ACTGTGTATGAGTGTAGTAGCTAAGCTTCCACTCAAATAGCAGGGAGATT  50
      |||||||||||| || |||||| ||||  |||||||   |||||||||||
seq2  ACTGTGTATGAG-GTTGTAGCT-AGCT--CACTCAATAGGCAGGGAGATT  46

seq1  CAAAACATAGGACCATGTGCTTGGATTAGAGATGAAGATATGCCTTTGTC  100
      ||||||||| || |||| |||  ||||||||||||  ||| ||  |||||
seq2  CAAAACATA-GAACATGGGCT--GATTAGAGATGAGAATA-GC--TTGTC  90

seq1  ACCAGCATCTTAAATAGACCATAATGGCTGTCCTTTGCTAGCATGGTATG  150
       |||||||| |||||| ||||| || ||||| |||||||||||| |||||
seq2  -CCAGCATC-TAAATA-ACCAT-ATTGCTGT-CTTTGCTAGCAT-GTATG  134

seq1  CTTTCTGCTTAGATGGGTTAATTTGCAGAGTTGGGATATGGGCTAGTGGA  200
      | ||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  C-TTCTGCTTAGATGGGTTAA-TTGCAGAGTTGGGATAT-GGCTAGTGGA  181

seq1  ACCTGAACTGGTTTTGACCAATTTAAGTTTTAGGGCCACAATGGTCTATC  250
      ||| ||||||| ||||||||||||||| |||||||||||||| |||||||
seq2  ACC-GAACTGG-TTTGACCAATTTAAG-TTTAGGGCCACAAT-GTCTATC  227

seq1  ACTGCACAATATGCCCTGAGCACCATAGGCACTGCTAGTATCAGCTTAAA  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAATATG-CCTGAGCACCATAGGCACTGCTAGTATCAGCTTAAA  276

seq1  GTCTGGACCATTCCTTCAATTGACTTCTTTAGTACATGTGTTTTCTTCAT  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGACCA-TCCTTCAATTGACTTCTTTAGTACATGTGTTTTCTTCAT  325

seq1  TATTTCTCAATCAAATTGTATTAGGTACTTTTAGTCCTCAACTTACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCAATCAAATTGTATTAGGTACTTTTAGTCCTCAACTTACCAAA  375

seq1  GTCTTCCTCACTGATCAAAACAAAGTCTATTAAACTTAAAGAGCTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTCACTGATCAAAACAAAGTCTATTAAACTTAAAGAGCTGAAGT  425

seq1  CATTGGCTTACACTCCACTTTTCTACTAGAGTTTATCTTAATTATTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCTTACACTCCACTTTTCTACTAGAGTTTATCTTAATTATTCATG  475

seq1  TGTTATCTCTTTATTAAGTCCCTTCATTAAATAACTGGTCAGCTTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTCTTTATTAAGTCCCTTCATTAAATAACTGGTCAGCTTTATTG  525

seq1  TATATGCGTCAAGTAATATTTGTATAATGAGCATGGTCATCTTAAAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCGTCAAGTAATATTTGTATAATGAGCATGGTCATCTTAAAGTAC  575

seq1  CTTTGAGTACTCAAACAAGCCCACACAGTAAAAAGTAATCTTACAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTACTCAAACAAGCCCACACAGTAAAAAGTAATCTTACAATTTG  625

seq1  TATCTGGTTTATGCTTATATATATACACACATAAAATGTTATAGAGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTTTATGCTTATATATATACACACATAAAATGTTATAGAGATAT  675

seq1  AAATATTTAAATGTAGTCATGTATCGCTGCATTCATAGGTGAAATATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAAATGTAGTCATGTATCGCTGCATTCATAGGTGAAATATACA  725

seq1  TGAAGTTATTTAGCAACAAATTATAAGGTATTTGATTGAGACCAGAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTATTTAGCAACAAATTATAAGGTATTTGATTGAGACCAGAGTTG  775

seq1  GGAAATAGAATATAAACATAAGACAACTTCCTTCTCCAAAGACCTTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAGAATATAAACATAAGACAACTTCCTTCTCCAAAGACCTTAAAA  825

seq1  CTGTGTGTAAAAGACAAAATGCTTAGCAGTGTCACTGAATGAGATGCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTAAAAGACAAAATGCTTAGCAGTGTCACTGAATGAGATGCTAT  875

seq1  GCAGCAGAATTGAATACAGACAACCAGACTGATGGCACAGTGCGGGTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAATTGAATACAGACAACCAGACTGATGGCACAGTGCGGGTTTG  925

seq1  TAACAAACAAGGAAATGAAACTTTTAACTGAAGTATTCCAGATACATTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACAAGGAAATGAAACTTTTAACTGAAGTATTCCAGATACATTAA  975

seq1  ATTTTTATTTCACTGTAAAATTAAATATTTATTCCTGTTTCTAGATTCGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTCACTGTAAAATTAAATATTTATTCCTGTTTCTAGATTCGA  1025

seq1  TTGCCAATCTGTGTGTTCATATCTATATTTATCTACTTATATCTTACATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAATCTGTGTGTTCATATCTATATTTATCTACTTATATCTTACATA  1075

seq1  CCACATATCTGTGTCTATATAGCCATCTGGGTCTACATACCACACACTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATCTGTGTCTATATAGCCATCTGGGTCTACATACCACACACTGT  1125

seq1  AGCTGTGACTCTAACATGGGGTCTAACACATGTTTGGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGACTCTAACATGGGGTCTAACACATGTTTGGAATTC  1167