BAC Information

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BAC

Clone NameB6Ng01-120C18
Chromosome14 (Build37)
Map Location 66,398,258 - 66,532,827
singlet/doubletdoublet
Overlap genePbk, Esco2, Ccdc25
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5
Downstream geneScara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120C18.bB6Ng01-120C18.g
ACCDH924185DH924186
length1,2331,029
definitionDH924185|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C18, 5' end.DH924186|Mus musculus domesticus DNA, BAC clone: B6Ng01-120C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,398,258 - 66,399,498)(66,531,786 - 66,532,827)
sequence
gaattcctggctgctgctgctgtttgcccatggccatctgaggaggagcc
aggctcagcaagccctgcagctcatggctgtcagaggtagaaaggatact
agatagagtcaggaaggatactagaggtctatcactcggcctccttgttt
tataggtgggaaagctgcaaacagaggagcagagactgagcaagtgcatt
cagtgtttcatttcctaagctttatggctttgactgtaatagagaaccat
gagtgcccaggaaggcgttcaaagaacgtcagagtatgaatcccccacat
ataatactttgatataaggtctgtttcaagctgaaaacaattaaggagaa
atgtacaggagacatctttctacctttcccctagagtggggtagaactct
gtaaagtcgtccctccttccttctctaccaaatagggactaaattatcac
atgagatgacctaagacccttcacagcctggacaccacactggggtattc
tatgcaatgaagaagtctttatgaagcaggtaactggcttcccacatgtt
tgcatttccaccttgcactgtccccaatgctgtctgttgtctgttgacaa
tctctttaagtctgaattagttctactctatgtctttgagagtctgttta
cctctggatttcttctcacaagtgtaggagacatacatgttagtacacat
ctgtttgtttaccttttgtaaatctgtcttttgttataagagacctagac
aacaggaaagaaggataaaaagaactccccctcccatcccatccccttcc
ccctcccttctcctccttctcctccttcttctccttctcctcctcctgta
ctttctggctcatatgtttaatggttggcccagatctatactgctagaca
agagagtgcatgtgaggtccaagctccacagccaggaacaaaagagggtt
ataaatagccagaggttaaagagaatccaggaatcagcagcaattagggg
aaactgtagttacaggcacactggccacaaggcaggcagacactggcaga
cactgggtacatacaccgggtagatgggcaacagggtcacaagaaaggca
tacatacctaatcaggctagctgaaaaaccaaaaggtgggagggccatca
cctcggaactcagcttccattttagagagatatcccaccaatgtttctgg
catgacagggttaaaggtcacaggtttaaaagg
gaattcagctgagacagtagaaaagctaaaataaatccatactaggcagc
tcccaaccactaccaactcccactccgggggatcagacatcttcttctgg
cctctttgggctcctgcatgcatctatatgtgcatgtgaacctgtccaag
tagatctatcatctgtgcattccactgaatacaagttaaaactcgctgct
taagaagaatcataaggcagtaatttatttccaaaaagaaattagaatag
gaattggtttaaataaatataggctatattttcaaactgttttgtaatga
ggagattataattcagaagtttaggaatgtatctgaagcaagactttaaa
aataagattagtatccatgaaatattattttggacaaagaagaaaagcta
agatggcagcttcagagtatagaaaagtaagccagaacacagtaaaccag
aaagaacgaactaataagatgtagagattaaaaacatcaagaaaaaaaag
gttggaatttaattttgagctggtgtcctgaattccaggttggccttgag
cttactttgtagtggagggtgatctctagctctgatcctcctgcctccac
atcctgagtgctgggattacaagcatgtgccatcatgcttggttcgtaag
aggaaagtctagaacagagaaggtcaacaaagtcaaagactatgaaaact
gagacatgccagagcagtggttctcggccttcctgatgctgcgatccttt
aatacagtttctatattgtggtggtccccaaccataaaattatttttgtt
gctacttcataactgtagtttgctactgttatgaatcataaatggaatta
tctgtgtttccgattgtgtaggcaatccctatgaaagggtcatctgaccc
caagagtcgtgatccataggctaggaactgcttccctaggcatggttgac
tagaaaagttcatgaaggttaaatagtgctatcatgtgaaaggtgaaatt
agagattatgaattcaatgccatactttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66398258_66399498
seq2: B6Ng01-120C18.b_40_1272

seq1  GAATTCCTGGCTGCTGCTGCTGTTTGCCCATGGCCATCTGAGGAGGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTGCTGCTGCTGTTTGCCCATGGCCATCTGAGGAGGAGCC  50

seq1  AGGCTCAGCAAGCCCTGCAGCTCATGGCTGTCAGAGGTAGAAAGGATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGCAAGCCCTGCAGCTCATGGCTGTCAGAGGTAGAAAGGATACT  100

seq1  AGATAGAGTCAGGAAGGATACTAGAGGTCTATCACTCGGCCTCCTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGTCAGGAAGGATACTAGAGGTCTATCACTCGGCCTCCTTGTTT  150

seq1  TATAGGTGGGAAAGCTGCAAACAGAGGAGCAGAGACTGAGCAAGTGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGGGAAAGCTGCAAACAGAGGAGCAGAGACTGAGCAAGTGCATT  200

seq1  CAGTGTTTCATTTCCTAAGCTTTATGGCTTTGACTGTAATAGAGAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCATTTCCTAAGCTTTATGGCTTTGACTGTAATAGAGAACCAT  250

seq1  GAGTGCCCAGGAAGGCGTTCAAAGAACGTCAGAGTATGAATCCCCCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCCAGGAAGGCGTTCAAAGAACGTCAGAGTATGAATCCCCCACAT  300

seq1  ATAATACTTTGATATAAGGTCTGTTTCAAGCTGAAAACAATTAAGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTTTGATATAAGGTCTGTTTCAAGCTGAAAACAATTAAGGAGAA  350

seq1  ATGTACAGGAGACATCTTTCTACCTTTCCCCTAGAGTGGGGTAGAACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGGAGACATCTTTCTACCTTTCCCCTAGAGTGGGGTAGAACTCT  400

seq1  GTAAAGTCGTCCCTCCTTCCTTCTCTACCAAATAGGGACTAAATTATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTCGTCCCTCCTTCCTTCTCTACCAAATAGGGACTAAATTATCAC  450

seq1  ATGAGATGACCTAAGACCCTTCACAGCCTGGACACCACACTGGGGTATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGACCTAAGACCCTTCACAGCCTGGACACCACACTGGGGTATTC  500

seq1  TATGCAATGAAGAAGTCTTTATGAAGCAGGTAACTGGCTTCCCACATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAATGAAGAAGTCTTTATGAAGCAGGTAACTGGCTTCCCACATGTT  550

seq1  TGCATTTCCACCTTGCACTGTCCCCAATGCTGTCTGTTGTCTGTTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCACCTTGCACTGTCCCCAATGCTGTCTGTTGTCTGTTGACAA  600

seq1  TCTCTTTAAGTCTGAATTAGTTCTACTCTATGTCTTTGAGAGTCTGTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAAGTCTGAATTAGTTCTACTCTATGTCTTTGAGAGTCTGTTTA  650

seq1  CCTCTGGATTTCTTCTCACAAGTGTAGGAGACATACATGTTAGTACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGATTTCTTCTCACAAGTGTAGGAGACATACATGTTAGTACACAT  700

seq1  CTGTTTGTTTACCTTTTGTAAATCTGTCTTTTGTTATAAGAGACCTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTTTACCTTTTGTAAATCTGTCTTTTGTTATAAGAGACCTAGAC  750

seq1  AACAGGAAAGAAGGATAAAAAGAACTCCCCCTCCCATCCCATCCCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAGAAGGATAAAAAGAACTCCCCCTCCCATCCCATCCCCTTCC  800

seq1  CCCTCCCTTCTCCTCCTTCTCCTCCTTCTTCTCCTTCTCCTCCTCCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTCTCCTCCTTCTCCTCCTTCTTCTCCTTCTCCTCCTCCTGTA  850

seq1  CTTTCTGGCTCATATGTTTAATGGTTGGCCCAGATCTATACTGCTAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGCTCATATGTTTAATGGTTGGCCCAGATCTATACTGCTAGACA  900

seq1  AGAGAGTGCATGTGAGGTCCAAGCTCCACAGCCAGGAACAAAAGAGGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGCATGTGAGGTCCAAGCTCCACAGCCAGGAACAAAAGAGGGTT  950

seq1  ATAAATAGCCAGAGGTTAAAGAGAATCCAAGGAATCAGCAGCAAATAGGG  1000
      |||||||||||||||||||||||||||| ||||||||||||||| |||||
seq2  ATAAATAGCCAGAGGTTAAAGAGAATCC-AGGAATCAGCAGCAATTAGGG  999

seq1  GAAACTGTAGTTACAGGCACACTGGCCACAAGGCAGGCAGACACTGGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTAGTTACAGGCACACTGGCCACAAGGCAGGCAGACACTGGCAG  1049

seq1  ACACCTGGGTACATACA-CGGGTAGATGGGCACACA-GGTCACAAGATAG  1098
      ||| ||||||||||||| |||||||||||||| ||| |||||||||| ||
seq2  ACA-CTGGGTACATACACCGGGTAGATGGGCA-ACAGGGTCACAAGAAAG  1097

seq1  GCATACATACCTATACAGGCTAGCTGACAAACACAAAAGGTGG--AGGCA  1146
      |||||||||||||  |||||||||||| |||| ||||||||||   ||| 
seq2  GCATACATACCTAATCAGGCTAGCTGAAAAAC-CAAAAGGTGGGAGGGCC  1146

seq1  TTCACCTCCGACATCAAGGCTGCATTTATAGAGA---ATCACACCAAAGT  1193
       ||||||| ||  |||  ||| |  || ||||||   ||| ||||||   
seq2  ATCACCTCGGAACTCA--GCTTCCATTTTAGAGAGATATCCCACCAA---  1191

seq1  GGTGTCTGCCATGAACAGGTTTATAAAAGGTCACAGGTTTATAAAAGG  1241
       || |||| |||| ||||| ||   ||||||||||||||  |||||||
seq2  TGTTTCTGGCATG-ACAGGGTT---AAAGGTCACAGGTT--TAAAAGG  1233

seq1: chr14_66531786_66532827
seq2: B6Ng01-120C18.g_67_1095 (reverse)

seq1  CAAAGTTATTGGCATTGGATTTTCATAATTCCTCTTAATTTCACCTTTCA  50
      ||||||   |||||||| |  ||||||||  ||| |||||||||||||||
seq2  CAAAGT--ATGGCATTGAA--TTCATAAT--CTC-TAATTTCACCTTTCA  43

seq1  CATGATAGCACTATTTATACCTTCATGAACTTTTTCTAGTCAACATTGCC  100
      ||||||||||||||||| |||||||||||| |||||||||||||  ||||
seq2  CATGATAGCACTATTTA-ACCTTCATGAAC-TTTTCTAGTCAACCATGCC  91

seq1  TAGGGAAGCAGTTCCTAGCCTATGGATCACGACCTCTTTGGGGTCAGATG  150
      |||||||||||||||||||||||||||||||| ||| |||||||||||||
seq2  TAGGGAAGCAGTTCCTAGCCTATGGATCACGA-CTC-TTGGGGTCAGATG  139

seq1  ACCCTTTCATAGGGATTGCCTAACACAATCGGAAAACACAGATAATTCCA  200
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  ACCCTTTCATAGGGATTGCCT-ACACAATCGG-AAACACAGATAATTCCA  187

seq1  -TTATGATTCATAACAGTAGCAAAACTACAGTTATGAAGTAGCAACAAAA  249
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTATGATTCATAACAGTAGC-AAACTACAGTTATGAAGTAGCAACAAAA  236

seq1  ATAATTTTATGGTTGGGGACCACCACAATATAGAAACTGTATTAAAGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTATGGTTGGGGACCACCACAATATAGAAACTGTATTAAAGGAT  286

seq1  CGCAGCATCAGGAAGGCCGAGAACCACTGCTCTGGCATGTCTCAGTTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCATCAGGAAGGCCGAGAACCACTGCTCTGGCATGTCTCAGTTTTC  336

seq1  ATAGTCTTTGACTTTGTTGACCTTCTCTGTTCTAGACTTTCCTCTTACGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTGACTTTGTTGACCTTCTCTGTTCTAGACTTTCCTCTTACGA  386

seq1  ACCAAGCATGATGGCACATGCTTGTAATCCCAGCACTCAGGATGTGGAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCATGATGGCACATGCTTGTAATCCCAGCACTCAGGATGTGGAGG  436

seq1  CAGGAGGATCAGAGCTAGAGATCACCCTCCACTACAAAGTAAGCTCAAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATCAGAGCTAGAGATCACCCTCCACTACAAAGTAAGCTCAAGG  486

seq1  CCAACCTGGAATTCAGGACACCAGCTCAAAATTAAATTCCAACCTTTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGGAATTCAGGACACCAGCTCAAAATTAAATTCCAACCTTTTTT  536

seq1  TTCTTGATGTTTTTAATCTCTACATCTTATTAGTTCGTTCTTTCTGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATGTTTTTAATCTCTACATCTTATTAGTTCGTTCTTTCTGGTTT  586

seq1  ACTGTGTTCTGGCTTACTTTTCTATACTCTGAAGCTGCCATCTTAGCTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCTGGCTTACTTTTCTATACTCTGAAGCTGCCATCTTAGCTTT  636

seq1  TCTTCTTTGTCCAAAATAATATTTCATGGATACTAATCTTATTTTTAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGTCCAAAATAATATTTCATGGATACTAATCTTATTTTTAAAG  686

seq1  TCTTGCTTCAGATACATTCCTAAACTTCTGAATTATAATCTCCTCATTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTCAGATACATTCCTAAACTTCTGAATTATAATCTCCTCATTAC  736

seq1  AAAACAGTTTGAAAATATAGCCTATATTTATTTAAACCAATTCCTATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTTGAAAATATAGCCTATATTTATTTAAACCAATTCCTATTCT  786

seq1  AATTTCTTTTTGGAAATAAATTACTGCCTTATGATTCTTCTTAAGCAGCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTTTGGAAATAAATTACTGCCTTATGATTCTTCTTAAGCAGCG  836

seq1  AGTTTTAACTTGTATTCAGTGGAATGCACAGATGATAGATCTACTTGGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAACTTGTATTCAGTGGAATGCACAGATGATAGATCTACTTGGAC  886

seq1  AGGTTCACATGCACATATAGATGCATGCAGGAGCCCAAAGAGGCCAGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACATGCACATATAGATGCATGCAGGAGCCCAAAGAGGCCAGAAG  936

seq1  AAGATGTCTGATCCCCCGGAGTGGGAGTTGGTAGTGGTTGGGAGCTGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCTGATCCCCCGGAGTGGGAGTTGGTAGTGGTTGGGAGCTGCCT  986

seq1  AGTATGGATTTATTTTAGCTTTTCTACTGTCTCAGCTGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGGATTTATTTTAGCTTTTCTACTGTCTCAGCTGAATTC  1029